genome.fa.s10879.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010879.1 Kokia drynarioides strain JFW-HI SEQ_125847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146454

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1656--1734	37	2.1	37	100	0	158	31	20	21	26	1.98
2852--3232	59	6.5	59	88	1	523	33	32	3	30	1.75
4509--4611	38	2.7	38	76	10	102	22	23	19	34	1.96
5625--5670	24	1.9	24	90	0	74	36	21	19	21	1.95
9015--9043	6	4.8	6	100	0	58	31	0	34	34	1.58
10225--10287	26	2.4	26	100	0	126	23	15	28	31	1.96
16426--16829	30	13.7	30	74	11	300	36	0	25	36	1.62
16466--16829	59	6.2	58	73	11	258	36	0	25	37	1.62
16428--16829	89	4.6	87	80	8	375	36	0	26	36	1.62
19525--19565	19	2.1	20	86	4	57	53	7	2	36	1.42
23112--23181	24	2.9	24	86	0	86	24	24	22	28	1.99
25008--25259	55	4.6	55	82	2	283	27	31	18	22	1.97
25043--25253	109	1.9	109	87	1	307	27	29	18	23	1.98
36675--36730	27	2.0	28	82	6	69	28	7	3	60	1.40
36767--36807	21	2.0	21	85	0	55	34	7	19	39	1.80
40056--40345	120	2.4	118	93	1	472	49	14	2	33	1.57
40391--40422	16	2.1	15	94	5	55	53	12	0	34	1.39
44868--44906	2	19.5	2	89	10	62	48	0	2	48	1.15
46053--46111	13	4.7	12	77	10	55	49	5	5	40	1.47
46564--46666	48	2.1	48	92	3	172	45	9	7	36	1.66
48952--49000	20	2.4	21	80	10	57	57	0	4	38	1.18
50877--50902	6	4.3	6	100	0	52	34	34	15	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53920--53963	20	2.2	20	84	8	54	36	34	11	18	1.86
56879--56949	34	2.1	34	94	0	124	29	22	5	42	1.76
63167--63220	5	11.0	5	79	18	60	62	0	0	37	0.95
63174--63218	23	1.9	23	90	4	72	64	0	0	35	0.94
64216--64259	21	2.2	20	87	4	61	43	0	0	56	0.99
67709--67763	21	2.6	21	73	0	56	23	18	23	34	1.96
74645--74699	19	2.9	19	83	5	67	27	50	18	3	1.63
75777--75810	17	2.0	17	88	11	52	20	0	8	70	1.13
75934--75960	12	2.2	12	100	0	54	40	0	0	59	0.98
76769--76846	23	3.4	22	77	7	84	38	12	17	30	1.88
80219--80372	76	2.0	76	98	0	299	32	22	16	28	1.96
88095--88180	43	2.0	43	100	0	172	30	13	11	44	1.80
96558--96640	42	2.0	41	90	2	130	30	16	8	44	1.78
99643--99673	4	7.8	4	100	0	62	25	0	74	0	0.82
102162--102194	16	2.1	16	94	0	57	27	0	0	72	0.85
104515--104557	21	2.0	21	86	8	61	62	0	0	37	0.95
107378--107439	4	16.2	4	79	18	53	74	0	25	0	0.82
107373--107439	7	9.4	7	75	15	57	73	1	25	0	0.92
107460--107484	12	2.1	12	100	0	50	36	0	0	64	0.94
109321--109405	43	2.0	43	83	4	109	34	9	9	47	1.68
109876--109910	6	5.8	6	89	0	52	51	2	45	0	1.16
109876--109910	18	1.9	18	94	0	61	51	2	45	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110313--110434	7	17.6	7	69	20	62	46	22	0	29	1.58
110319--110400	28	2.9	27	80	10	85	46	23	0	30	1.53
112908--112954	24	2.0	24	95	0	85	19	10	19	51	1.75
113388--113481	4	24.0	4	80	10	88	1	25	0	73	0.90
113388--113481	39	2.4	40	83	3	120	1	25	0	73	0.90
116120--116148	14	2.1	14	100	0	58	48	6	0	44	1.29
133658--133694	18	2.1	18	89	0	56	56	2	5	35	1.36
135436--135477	20	2.2	20	87	8	61	54	7	7	30	1.54
136150--136226	18	4.2	18	70	22	52	63	1	5	29	1.24
142224--142414	98	2.0	95	83	4	240	46	9	2	40	1.51
145541--145606	33	2.0	33	90	3	105	46	15	6	31	1.70

Tables:   1

The End!