Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010888.1 Kokia drynarioides strain JFW-HI SEQ_125856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14150
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32


Found at i:1961 original size:23 final size:23

Alignment explanation


    Indices: 1931--1986  Score: 76
    Period size: 23  Copynumber: 2.4  Consensus size: 23

       1921 GACGTGACGT

                                   
       1931 CCAGTCAGCAGCTTCTAGAAGGC
          1 CCAGTCAGCAGCTTCTAGAAGGC

                    *  *          *
       1954 CCAGTCAGTAGTTTCTAGAAGGT
          1 CCAGTCAGCAGCTTCTAGAAGGC

             *        
       1977 CTAGTCAGCA
          1 CCAGTCAGCA

       1987 ATGATGGACG


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23


Consensus pattern (23 bp):   
CCAGTCAGCAGCTTCTAGAAGGC

Found at i:8487 original size:15 final size:16

Alignment explanation


    Indices: 8467--8496  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       8457 TTATTTCGGT

                            
       8467 TATTTA-TTTTATTTC
          1 TATTTATTTTTATTTC

                           
       8482 TATTTATTTTTATTT
          1 TATTTATTTTTATTT

       8497 TTAGTATTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77


Consensus pattern (16 bp):   
TATTTATTTTTATTTC
Done.