Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010889.1 Kokia drynarioides strain JFW-HI SEQ_125857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3336
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.32

Warning! 74 characters in sequence are not A, C, G, or T


Found at i:50 original size:30 final size:30

Alignment explanation


    Indices: 11--83  Score: 139
    Period size: 30  Copynumber: 2.5  Consensus size: 30

          1 AAAAAAAAAT

                                          
         11 CCAAA-ACAAATGGCCCAGTTACAGATGGC
          1 CCAAATACAAATGGCCCAGTTACAGATGGC

                                          
         40 CCAAATACAAATGGCCCAGTTACAGATGGC
          1 CCAAATACAAATGGCCCAGTTACAGATGGC

                          
         70 CCAAATACAAATGG
          1 CCAAATACAAATGG

         84 TCTAATTATA


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  29    5  0.12
  30   38  0.88

ACGTcount: A:0.40, C:0.26, G:0.19, T:0.15


Consensus pattern (30 bp):   
CCAAATACAAATGGCCCAGTTACAGATGGC

Found at i:78 original size:15 final size:15

Alignment explanation


    Indices: 11--83  Score: 85
    Period size: 15  Copynumber: 4.9  Consensus size: 15

          1 AAAAAAAAAT

                           
         11 CCAAA-ACAAATGGC
          1 CCAAATACAAATGGC

               **    *     
         25 CCAGTTACAGATGGC
          1 CCAAATACAAATGGC

                           
         40 CCAAATACAAATGGC
          1 CCAAATACAAATGGC

               **    *     
         55 CCAGTTACAGATGGC
          1 CCAAATACAAATGGC

                          
         70 CCAAATACAAATGG
          1 CCAAATACAAATGG

         84 TCTAATTATA


Statistics
Matches: 46,  Mismatches: 12, Indels: 1
        0.78            0.20        0.02

Matches are distributed among these distances:
  14    3  0.07
  15   43  0.93

ACGTcount: A:0.40, C:0.26, G:0.19, T:0.15


Consensus pattern (15 bp):   
CCAAATACAAATGGC
Done.