genome.fa.s10891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010891.1 Kokia drynarioides strain JFW-HI SEQ_125859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111560

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--48	17	2.8	18	81	12	64	58	2	0	39	1.10
799--1094	49	6.0	49	69	7	195	34	17	30	18	1.94
1136--1287	37	3.8	37	77	17	178	32	11	26	29	1.92
1173--1330	48	3.5	47	76	18	192	32	13	27	26	1.93
1133--1330	85	2.3	85	95	0	360	32	13	26	27	1.93
1173--1668	207	2.4	208	83	2	597	37	14	22	25	1.93
1586--1723	48	2.9	48	82	6	156	39	15	21	22	1.91
1482--1830	170	2.0	171	83	2	443	41	14	19	24	1.89
1766--2085	85	3.9	83	70	14	241	41	17	17	23	1.90
1804--2150	160	2.2	160	92	1	561	40	19	16	23	1.91
2298--2417	48	2.5	48	87	2	170	42	13	21	22	1.87
2221--2532	172	1.8	171	85	2	437	41	15	20	23	1.90
4581--4641	28	2.1	31	87	9	92	29	16	4	49	1.66
4580--4744	86	1.9	86	81	3	199	32	21	3	41	1.71
4586--4724	29	4.8	29	72	11	106	33	23	4	38	1.74
4681--4744	29	2.2	30	81	13	71	37	26	0	35	1.57
5436--5472	17	2.1	18	85	14	51	37	13	5	43	1.67
12498--12627	65	2.0	65	98	0	251	33	19	18	28	1.95
13290--13324	18	1.9	18	88	0	52	45	0	2	51	1.16
19940--20042	23	4.5	22	82	11	109	39	21	24	14	1.91
19950--20041	48	2.0	46	83	12	116	39	23	22	14	1.91
20799--20850	24	2.2	24	100	0	104	30	21	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23548--23612	9	8.0	8	76	21	55	0	27	3	69	1.03
23549--23612	12	5.3	12	71	19	53	0	28	3	68	1.04
23548--23612	18	3.6	18	76	19	73	0	27	3	69	1.03
23552--23612	15	3.9	15	73	23	54	0	27	3	68	1.05
30569--30602	18	1.9	17	88	5	50	55	8	11	23	1.63
34460--34499	16	2.4	17	83	8	55	60	0	0	40	0.97
35327--35364	12	3.2	12	88	7	51	42	0	0	57	0.98
38540--38569	15	2.0	15	100	0	60	33	13	20	33	1.91
39033--39074	17	2.5	17	84	7	50	52	4	11	30	1.59
39688--39719	14	2.1	16	88	11	50	34	9	3	53	1.49
42911--42942	11	3.0	11	95	4	57	62	0	0	37	0.95
45991--46036	23	2.0	23	86	0	65	30	15	30	23	1.95
46325--46358	10	3.5	10	84	8	52	73	0	2	23	0.97
46338--46383	6	7.8	6	80	4	58	80	0	2	17	0.81
46320--46384	23	2.9	21	78	17	60	78	0	3	18	0.88
56724--56800	22	3.5	22	90	0	118	11	14	28	45	1.80
59033--59072	20	2.0	20	90	4	64	22	17	7	52	1.69
60526--60577	24	2.1	25	82	10	63	51	3	7	36	1.49
63640--63749	29	3.9	29	69	9	82	42	24	11	20	1.86
67802--67857	27	2.1	27	86	6	78	41	16	1	41	1.58
71735--71782	15	3.3	15	79	5	62	39	22	8	29	1.83
71733--71796	29	2.2	29	91	0	101	42	21	7	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71750--71801	14	3.6	14	79	5	59	44	21	7	26	1.79
71746--71805	29	2.1	29	87	0	84	40	20	10	30	1.85
77258--77398	43	3.3	43	91	1	221	34	9	26	28	1.89
82866--82900	2	17.5	2	100	0	70	48	0	0	51	1.00
84567--84608	17	2.4	18	77	22	54	28	2	0	69	1.01
84714--84781	5	13.4	5	72	14	50	48	5	2	42	1.42
85629--85693	28	2.3	28	91	0	103	38	16	9	35	1.81
86014--86059	23	2.0	24	86	4	67	17	15	19	47	1.82
86610--86639	15	1.9	16	93	6	53	46	3	0	50	1.18
86875--86920	24	1.9	24	86	0	65	50	0	8	41	1.33
88017--88270	127	2.0	127	96	0	472	44	17	8	29	1.78
88263--88308	16	2.9	16	81	12	67	2	21	0	76	0.90
95253--95297	18	2.4	19	88	3	65	53	0	2	44	1.13
95254--95302	18	2.7	18	87	3	62	53	0	2	44	1.12
95314--95390	31	2.4	32	91	4	129	55	1	2	40	1.22
95641--95722	8	9.8	8	71	25	55	32	2	2	62	1.22
95633--95756	19	6.4	19	71	15	60	35	2	1	60	1.20
95681--95717	11	3.6	11	79	20	53	35	0	5	59	1.20
95681--95761	29	2.7	30	81	5	85	34	1	3	60	1.22
95729--95786	30	1.9	31	89	3	91	36	1	1	60	1.17
95729--95793	30	2.1	31	85	2	87	35	1	1	61	1.15
95729--95794	31	2.1	31	86	5	89	34	1	1	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99387--99494	42	2.5	42	72	18	96	31	21	17	29	1.96
103973--104022	23	2.2	23	81	0	55	42	18	16	24	1.89
107046--107107	19	3.3	19	84	8	65	54	3	3	38	1.32
107076--107113	20	1.9	19	89	5	58	52	5	0	42	1.24
107307--107351	23	2.0	23	82	8	56	35	6	4	53	1.47
109107--109183	32	2.4	34	78	10	88	63	6	3	25	1.36

Tables:   1

The End!