Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010898.1 Kokia drynarioides strain JFW-HI SEQ_125866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2939
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36


Found at i:1242 original size:31 final size:31

Alignment explanation


    Indices: 1200--1262  Score: 90
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1190 CTTAGACAGC

                        *  *               
       1200 TCTAAACTGATGCACGGTAAACAATTAACTT
          1 TCTAAACTGATGAACAGTAAACAATTAACTT

                  *       *                
       1231 TCTAAATTGATGAATAGTAAACAATTAACTT
          1 TCTAAACTGATGAACAGTAAACAATTAACTT

             
       1262 T
          1 T

       1263 ACAATTGTAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.41, C:0.14, G:0.11, T:0.33


Consensus pattern (31 bp):   
TCTAAACTGATGAACAGTAAACAATTAACTT
Done.