Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000109.1 Kokia drynarioides strain JFW-HI SEQ_110746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3813
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3252 original size:12 final size:12

Alignment explanation


    Indices: 3235--3262  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       3225 AAAAAAATAT

                        
       3235 GAAATCCAAAAA
          1 GAAATCCAAAAA

                        
       3247 GAAATCCAAAAA
          1 GAAATCCAAAAA

                
       3259 GAAA
          1 GAAA

       3263 AAAATAAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.68, C:0.14, G:0.11, T:0.07


Consensus pattern (12 bp):   
GAAATCCAAAAA
Done.