genome.fa.s10902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010902.1 Kokia drynarioides strain JFW-HI SEQ_125870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  271290

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2457--2482	13	2.0	13	100	0	52	53	0	0	46	1.00
6298--6399	49	2.1	50	88	1	152	32	7	10	49	1.67
14577--14674	15	6.5	15	83	0	124	48	22	4	24	1.67
14560--14658	30	3.3	30	87	1	128	45	22	6	26	1.75
14577--14674	45	2.2	45	88	3	144	48	22	4	24	1.67
14574--14674	30	3.4	30	88	0	139	47	22	4	24	1.71
21069--21230	56	2.9	56	89	0	234	33	15	25	25	1.95
21335--21551	87	2.5	86	82	4	285	24	9	23	42	1.83
21335--21547	29	7.4	29	80	3	198	24	8	23	42	1.83
21657--21696	19	2.0	20	85	4	55	52	5	0	42	1.23
29818--29848	16	1.9	16	93	0	53	61	0	16	22	1.34
30757--30841	38	2.2	38	89	0	125	25	16	31	25	1.96
35925--35962	17	2.4	17	86	8	53	50	10	0	39	1.37
36333--36373	20	2.0	20	85	4	55	53	9	4	31	1.55
36840--36912	28	2.6	28	97	0	137	47	4	2	45	1.36
38609--38776	84	2.0	84	98	0	327	37	13	14	35	1.85
41767--41808	17	2.5	17	96	0	75	26	40	28	4	1.76
47882--47969	23	3.8	23	79	5	97	27	25	19	28	1.99
51915--51979	23	2.8	23	85	0	85	30	20	16	32	1.95
51978--52016	14	2.8	14	84	0	51	17	23	25	33	1.96
57141--57203	32	2.0	32	96	0	117	61	6	4	26	1.40
57141--57190	16	3.1	16	73	21	59	58	6	6	30	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60650--60688	12	3.2	12	85	0	51	2	28	0	69	1.02
60805--60835	11	2.8	11	95	0	53	22	0	22	54	1.44
69902--69987	40	2.2	39	91	6	138	47	2	0	50	1.14
72555--72582	2	14.0	2	100	0	56	50	0	0	50	1.00
76067--76116	24	2.1	23	82	10	57	36	4	2	58	1.29
76094--76260	58	2.9	58	81	7	196	43	2	1	52	1.24
85344--85389	25	1.9	23	86	8	65	36	4	4	54	1.40
90219--90266	24	2.0	24	100	0	96	20	16	0	62	1.33
95650--95689	15	2.9	14	82	17	57	22	5	0	72	1.04
95650--95702	27	2.0	27	82	14	65	24	5	0	69	1.09
98505--98548	21	2.1	21	100	0	88	38	22	0	38	1.55
101370--101506	26	5.3	26	80	0	121	39	16	20	23	1.92
101351--101524	52	3.3	52	79	0	177	38	15	18	27	1.91
101466--101516	26	2.0	26	88	0	75	39	17	21	21	1.93
101355--101554	104	1.9	104	80	2	231	36	16	20	27	1.93
104373--104432	17	3.7	16	73	18	61	33	1	6	58	1.34
105137--105230	44	2.1	44	84	0	116	43	22	18	15	1.87
105125--105236	23	5.0	23	79	5	131	43	21	18	16	1.87
112406--112513	23	4.7	23	80	4	128	43	22	18	15	1.87
112407--112512	46	2.3	46	86	3	142	44	21	17	16	1.87
116337--116376	21	1.9	21	89	0	62	80	0	17	2	0.83
125923--125974	22	2.4	22	96	0	95	38	13	26	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127456--127822	123	3.0	123	87	2	504	38	10	7	43	1.67
131294--131451	72	2.2	72	96	0	289	30	24	18	26	1.98
137102--137142	21	1.9	22	90	5	66	17	31	26	24	1.97
141167--141211	24	1.9	23	90	4	72	48	0	37	13	1.42
141755--141780	11	2.4	11	100	0	52	15	0	15	69	1.20
145275--145628	43	8.3	43	80	1	334	27	25	14	31	1.95
151873--151972	26	3.8	26	78	10	112	46	0	6	48	1.27
151919--152004	34	2.5	34	83	7	111	43	0	9	47	1.35
151964--152030	26	2.6	26	87	0	98	37	0	11	50	1.39
152016--152055	20	2.0	21	95	5	73	52	0	2	45	1.14
151964--152073	26	4.5	26	76	13	97	41	0	9	49	1.34
157193--157437	41	6.0	41	86	2	323	20	28	13	37	1.90
157409--157563	80	1.9	81	81	1	186	25	18	14	40	1.89
157409--157563	40	3.8	40	81	0	157	25	18	14	40	1.89
158994--159101	47	2.2	49	77	4	112	33	14	12	39	1.83
164747--164794	13	3.7	13	83	8	53	52	2	6	39	1.39
165123--165161	21	1.9	20	84	5	51	56	5	5	33	1.43
165215--165251	17	2.2	17	100	0	74	67	16	0	16	1.23
183354--183398	9	5.1	8	80	19	54	37	24	0	37	1.56
183354--183398	18	2.5	18	86	10	65	37	24	0	37	1.56
183667--183738	21	3.3	21	67	17	65	34	22	9	33	1.87
183806--183949	46	3.1	46	83	4	164	27	23	6	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184071--184121	21	2.4	21	86	0	75	45	29	1	23	1.64
184820--184858	19	2.1	19	85	0	51	25	23	30	20	1.98
187347--187381	15	2.3	15	90	9	54	28	14	31	25	1.95
192092--192140	18	2.7	18	90	0	80	34	24	20	20	1.96
210987--211017	16	1.9	16	93	0	53	61	0	16	22	1.34
211827--211875	26	1.9	25	95	4	89	28	24	16	30	1.96
211978--212048	37	1.9	37	91	0	115	21	12	30	35	1.91
214599--214683	30	2.8	30	80	3	100	29	20	25	24	1.99
214598--214685	15	5.9	15	74	12	65	29	19	26	25	1.98
214662--214696	15	2.3	15	90	0	52	25	14	31	28	1.95
214601--214696	30	3.2	30	76	14	90	28	18	27	26	1.98
220073--220142	34	2.1	34	97	0	131	37	17	5	40	1.73
222533--222583	23	2.2	23	89	0	84	9	49	5	35	1.60
234786--234841	24	2.3	24	84	3	67	33	1	19	44	1.61
239464--239505	18	2.3	18	84	15	52	30	11	7	50	1.66
254771--255013	108	2.3	108	82	7	300	32	8	9	49	1.65
257172--257241	29	2.4	30	85	2	88	14	30	25	30	1.95
257172--257265	30	3.2	30	86	1	109	14	26	28	29	1.95
259261--259308	23	2.1	23	84	7	62	62	2	14	20	1.42
260716--260747	17	1.9	16	93	6	55	28	0	0	71	0.86
260713--260754	17	2.5	17	85	11	52	28	0	0	71	0.86
260796--260875	40	2.0	40	97	0	151	41	12	8	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266726--266762	17	2.2	18	85	9	51	0	18	0	81	0.70
266728--266780	26	2.0	26	88	0	79	3	20	0	75	0.96
266725--266778	12	4.2	13	77	11	58	5	18	0	75	0.98
267823--267937	40	2.9	40	72	10	117	41	20	20	18	1.90
268220--268264	17	2.6	17	92	0	72	51	22	13	13	1.75

Tables:   1

The End!