genome.fa.s10903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010903.1 Kokia drynarioides strain JFW-HI SEQ_125871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101128

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3049--3175	23	5.6	23	80	5	109	43	22	22	11	1.85
12737--12823	24	3.6	24	88	0	111	50	12	12	24	1.75
16513--16548	14	2.5	14	90	4	54	0	22	0	77	0.76
16514--16548	16	2.2	16	90	10	54	0	20	0	80	0.72
16505--16571	27	2.6	25	81	11	73	2	17	0	79	0.86
17497--17536	20	2.0	20	85	9	55	15	10	12	62	1.54
22314--22577	116	2.3	116	88	0	393	35	27	8	27	1.86
23065--23169	36	2.9	36	85	1	138	20	26	16	37	1.93
26928--26986	16	3.5	17	81	11	68	79	0	11	8	0.93
34536--34776	128	1.9	128	89	1	376	31	15	23	29	1.95
36341--36380	16	2.4	16	87	4	53	25	0	0	75	0.81
37676--37719	19	2.4	18	82	14	54	22	2	0	75	0.92
37701--37743	16	2.7	15	75	10	50	23	6	0	69	1.12
37677--37743	32	2.2	29	82	15	73	23	4	0	71	1.04
39968--40015	13	3.7	13	83	5	53	41	0	16	41	1.48
48622--48667	8	5.6	8	79	5	56	45	2	0	52	1.13
48622--48667	17	2.8	17	84	12	60	45	2	0	52	1.13
49142--49170	3	9.7	3	100	0	58	65	0	0	34	0.93
49169--49234	3	22.0	3	90	0	105	37	0	28	33	1.58
56197--56223	13	2.1	13	100	0	54	14	0	0	85	0.61
67223--67326	23	4.5	23	91	2	156	15	20	21	43	1.88
68458--68607	23	6.4	23	76	11	112	41	23	23	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75631--75755	23	5.5	22	81	4	115	41	23	22	12	1.88
83700--83798	50	2.0	50	100	0	198	35	4	28	32	1.76
83880--83959	23	3.5	23	77	0	88	15	18	22	43	1.87
85302--85394	46	2.0	46	93	0	159	37	20	4	37	1.72
88372--88403	13	2.4	14	94	5	57	90	6	3	0	0.53
88739--88775	2	18.5	2	100	0	74	48	0	0	51	1.00
89728--89769	22	1.9	22	85	0	57	45	0	2	52	1.13
91007--91041	16	2.2	16	89	0	52	60	2	0	37	1.12
92798--92860	29	2.2	29	91	2	101	28	7	30	33	1.86
92990--93188	29	6.8	29	80	7	183	37	3	26	33	1.72
93014--93083	30	2.3	29	85	4	95	44	0	28	27	1.55
93021--93188	88	1.9	88	83	9	218	36	1	27	34	1.68
94922--94995	17	4.2	18	70	5	62	54	5	4	36	1.43
94933--94999	35	1.9	35	87	0	98	58	7	4	29	1.46
95402--96086	201	3.4	201	86	2	906	23	22	17	36	1.95
95902--96241	153	2.2	155	84	5	434	21	22	18	36	1.95
96604--96789	101	1.8	101	91	0	309	29	17	18	33	1.94
96918--97203	50	5.7	50	68	13	167	13	25	20	40	1.89
96879--97224	150	2.3	150	84	2	444	14	25	19	40	1.90
98947--99492	59	9.3	59	87	3	740	30	3	31	35	1.74
98940--99492	119	4.7	118	86	3	754	29	3	31	34	1.75

Tables:   1

The End!