genome.fa.s10908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010908.1 Kokia drynarioides strain JFW-HI SEQ_125876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118580

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035--2097	27	2.3	27	83	0	72	20	12	1	65	1.35
5102--5165	24	2.8	22	79	11	74	67	3	3	26	1.21
5149--5218	20	3.6	19	76	5	77	57	1	2	38	1.23
5252--5308	17	3.2	17	75	5	51	71	0	7	21	1.08
6018--6088	24	2.8	27	79	14	87	32	0	1	66	1.01
12734--12814	40	2.0	40	100	0	162	24	23	12	39	1.89
26068--26138	30	2.3	30	85	7	90	50	2	1	45	1.25
41204--41328	64	2.0	64	91	3	207	44	16	4	35	1.66
56335--56378	21	2.2	19	84	8	52	22	9	13	54	1.67
59750--59892	73	1.9	74	90	6	229	23	20	9	46	1.80
60604--60758	42	3.8	42	81	2	172	27	20	23	27	1.99
62122--62664	270	2.0	270	99	0	1068	29	13	22	34	1.92
66899--67188	157	1.8	157	88	2	447	27	23	25	23	2.00
77833--77916	28	3.0	28	89	0	132	22	28	16	32	1.96
81407--81431	2	12.5	2	100	0	50	52	0	0	48	1.00
83508--83828	24	13.0	24	78	5	273	34	16	23	25	1.95
83508--83855	74	4.7	73	77	5	311	35	15	23	25	1.94
83508--83854	124	2.8	123	83	4	396	35	15	23	25	1.94
83850--83925	24	3.2	24	86	0	107	38	15	21	25	1.92
83558--83902	124	2.8	123	81	5	295	35	16	22	25	1.95
85816--85855	20	2.0	21	85	5	55	20	7	27	45	1.78
87513--87579	32	2.1	32	83	10	84	8	31	1	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95176--95219	9	4.8	9	80	5	52	43	22	4	29	1.73
95177--95212	19	1.9	18	94	5	63	38	25	5	30	1.78
98242--98299	21	2.8	21	75	17	66	36	27	13	22	1.92
99010--99248	52	4.6	52	86	0	334	35	23	14	25	1.93
100118--100165	21	2.2	21	82	13	62	31	27	0	41	1.56
100510--100552	18	2.4	18	84	0	59	11	30	18	39	1.86
106963--107040	17	4.5	17	75	12	61	37	1	6	55	1.34
106996--107044	6	8.3	6	79	4	55	42	0	4	53	1.20
106992--107041	23	2.1	24	92	3	84	36	0	6	58	1.23
107427--107470	19	2.5	17	82	13	54	38	6	4	50	1.50
107432--107472	19	2.2	19	86	4	57	46	4	4	43	1.46
117074--117285	115	1.8	115	84	2	291	33	20	24	20	1.97
117140--117577	201	2.2	201	93	0	777	32	19	26	22	1.97
117408--117565	86	1.8	85	85	4	219	31	17	29	21	1.96
118416--118458	12	3.6	13	76	23	58	58	0	0	41	0.98

Tables:   1

The End!