Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010915.1 Kokia drynarioides strain JFW-HI SEQ_125883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10740
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:243 original size:7 final size:7

Alignment explanation


    Indices: 231--265  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

        221 AAAATTATTT

                   
        231 TAAATCC
          1 TAAATCC

                   
        238 TAAATCC
          1 TAAATCC

                  *
        245 TAAATCG
          1 TAAATCC

                   
        252 TAAATCC
          1 TAAATCC

                   
        259 TAAATCC
          1 TAAATCC

        266 ACTAAGAACT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   26  1.00

ACGTcount: A:0.43, C:0.26, G:0.03, T:0.29


Consensus pattern (7 bp):   
TAAATCC

Found at i:4902 original size:21 final size:21

Alignment explanation


    Indices: 4863--4902  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4853 TGTCCATTAA

                  *              
       4863 TCCATGGTAACTTCGGCTTTG
          1 TCCATGATAACTTCGGCTTTG

                      *   *    
       4884 TCCATGATAATTTCTGCTT
          1 TCCATGATAACTTCGGCTT

       4903 GATTCGTGAA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.17, C:0.23, G:0.17, T:0.42


Consensus pattern (21 bp):   
TCCATGATAACTTCGGCTTTG
Done.