Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010916.1 Kokia drynarioides strain JFW-HI SEQ_125884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 503119
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 107 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:213678 original size:187 final size:187
Alignment explanation
Indices: 213199--213688 Score: 598
Period size: 193 Copynumber: 2.6 Consensus size: 187
213189 ATTGCGACTT
* ** * ** *
213199 AAACCTTTCCCCTTGTGTGTTCACGGTACTGGATTTGCCGTTGCGACTTAAATCTTTCCCTTCAT
1 AAACCTTT-CCCTTGTGTCTTCGTGGTTCTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT
* * * *
213264 GTCTCTGAGGTACTAGGTTCGCCATTGTGACTTAAACCTTTCAC-TCGTGTCTTCGTGATATTGG
65 GTCTCTGAGGTACTAGGTTCACCATTGTGACTTAAA-CTTTCCCTTCGTCTCTTCGTGATACTGG
*
213328 ATTCGTCGTTATGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTAC
129 ATTCGTCGTTACGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCC--TAC
* *
213389 GACTTAACCTTTCCCTTGTGTCTTCGTGGTAT-TGGATTCATCGTTGCGGCTTAAATCTTTCCTT
1 -A---AACCTTTCCCTTGTGTCTTCGTGGT-TCTGGATTCACCGTTGCGGCTTAAATCTTTCCCT
* * * *
213453 TCATGTCTCTGAGGTATTAGGTTCACCATTGCGACTTAAACATTTCCCTTTGTCTCTTCGTGGTA
61 TCATGTCTCTGAGGTACTAGGTTCACCATTGTGACTTAAAC-TTTCCCTTCGTCTCTTCGTGATA
*
213518 CTGGATTCGTCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTA-TAAGGTTCGCC-A-
125 CTGGATTCGTCGTTACGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTACT-AGGTTCGCCTAC
*
213579 AAACCTTTCCCTTTGTGTCTTCGTGGTTCTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAC
1 AAACCTTTCCC-TTGTGTCTTCGTGGTTCTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT
* *
213644 G-CTTCTGAGGTACGAGGTTCAACC-CTGTGACTTAAATCTTTCCCT
65 GTC-TCTGAGGTACTAGGTTC-ACCATTGTGACTTAAA-CTTTCCCT
213689 CCATGTTTCA
Statistics
Matches: 261, Mismatches: 26, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
186 12 0.05
187 81 0.31
188 4 0.02
189 1 0.00
191 2 0.01
192 1 0.00
193 85 0.33
194 75 0.29
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (187 bp):
AAACCTTTCCCTTGTGTCTTCGTGGTTCTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATG
TCTCTGAGGTACTAGGTTCACCATTGTGACTTAAACTTTCCCTTCGTCTCTTCGTGATACTGGAT
TCGTCGTTACGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCTAC
Found at i:221570 original size:30 final size:31
Alignment explanation
Indices: 221512--221570 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
221502 ACTCGAGGGC
* *
221512 AAAATGGTAATTTTGAGAAAGTGTAGGGTCA
1 AAAATGGTAATTTTGAAAAAGTGAAGGGTCA
* *
221543 AAAATGG-AATTTTTAAAAATTGAAGGGT
1 AAAATGGTAATTTTGAAAAAGTGAAGGGT
221571 AAATAGTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAATGGTAATTTTGAAAAAGTGAAGGGTCA
Found at i:221629 original size:58 final size:59
Alignment explanation
Indices: 221507--221996 Score: 146
Period size: 58 Copynumber: 8.4 Consensus size: 59
221497 TGGACACTCG
* *
221507 AGGGCAAAATGGTAA-TTTTGAGAAAGTGTAGGGTCAAAAATGGAATTTTTAAAAATTGA
1 AGGGTAAAATAGTAATTTTTG-GAAAGTGTAGGGTCAAAAATGGAATTTTTAAAAATTGA
* * ** ** *
221566 AGGGT-AAATAGTAGTTTTTGGAAAGTTTAGGGTTTAAAATGGAATTTTTTGACATTCG-
1 AGGGTAAAATAGTAATTTTTGGAAAGTGTAGGGTCAAAAATGGAATTTTTAAAAATT-GA
* * * * ** *
221624 GGGGTAAAATGGTAATTTTT-GAAAGATCG--GGGTCAAATATGGAATTTTTGGAAGTTTGG
1 AGGGTAAAATAGTAATTTTTGGAAAG-T-GTAGGGTCAAAAATGGAATTTTT-AAAAATTGA
** * ** ** *
221683 A-GGTAAAAT-GATAA-TTTTGGAAA--AAACGGTGTCAAAAATAGAATTTTGGAAGCTCG-
1 AGGGTAAAATAG-TAATTTTTGGAAAGTGTA-GG-GTCAAAAATGGAATTTTTAAAAATTGA
** ** * ** * *
221739 -GGCGTAAAACGGTAATTTTTTAAAAATCG-A-GGTCAAAAATGGAATTTTTGGAAGTTCA
1 AGG-GTAAAATAGTAATTTTTGGAAAGT-GTAGGGTCAAAAATGGAATTTTTAAAAATTGA
* * * * * * ** * *
221797 AGGGTAAAGTGGTTATTTTTGGAAAAAT-CAAGGTCAAAAATGGAATTTTTGGAAGTTCA
1 AGGGTAAAATAGTAATTTTTGG-AAAGTGTAGGGTCAAAAATGGAATTTTTAAAAATTGA
* * * **
221856 AGGGTAAAAT-GATAATTTTTGGAAAAAT-CA-GGTCAAAAATTGAATTTTGTAAAGTTTTG-
1 AGGGTAAAATAG-TAATTTTTGG-AAAGTGTAGGGTCAAAAATGGAATTTT-TAAA-AATTGA
* * * * * *
221915 -GGGTAAAA-ATGTAGTTTTTAGAAAGTTTAGGGTCAAAAAT-AAAATTTTAGAAAAGTTTA
1 AGGGTAAAATA-GTAATTTTTGGAAAGTGTAGGGTCAAAAATGGAATTTTTA-AAAA-TTGA
*
221974 AGGGTCAAAATA-TGATTTTTGGA
1 AGGGT-AAAATAGTAATTTTTGGA
221997 TAGTTTAAGG
Statistics
Matches: 330, Mismatches: 63, Indels: 75
0.71 0.13 0.16
Matches are distributed among these distances:
56 1 0.00
57 47 0.14
58 162 0.49
59 100 0.30
60 15 0.05
61 4 0.01
62 1 0.00
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.33
Consensus pattern (59 bp):
AGGGTAAAATAGTAATTTTTGGAAAGTGTAGGGTCAAAAATGGAATTTTTAAAAATTGA
Found at i:221653 original size:29 final size:27
Alignment explanation
Indices: 221600--221876 Score: 99
Period size: 29 Copynumber: 9.6 Consensus size: 27
221590 GTTTAGGGTT
* *
221600 TAAAATGGAATTTTTTGACA-TTCGGGGG
1 TAAAATGGAA-TTTTTGAAAGATC-GGGG
221628 TAAAATGGTAATTTTTGAAAGATCGGGG
1 TAAAATGG-AATTTTTGAAAGATCGGGG
* * *
221656 TCAAATATGGAATTTTTGGAAGTTTGGAGG
1 T-AAA-ATGGAATTTTTGAAAGATCGG-GG
* * * * *
221686 TAAAATGATAATTTTGGAAAAAACGGTG
1 TAAAATG-GAATTTTTGAAAGATCGGGG
* * *
221714 TCAAAAATAGAA-TTTTGGAAGCTCGGGCG
1 T--AAAATGGAATTTTTGAAAGATCGGG-G
* * * *
221743 TAAAACGGTAATTTTTTAAAAATCGAGG
1 TAAAATGG-AATTTTTGAAAGATCGGGG
* * *
221771 TCAAAAATGGAATTTTTGGAAGTTCAAGGG
1 T--AAAATGGAATTTTTGAAAGATC-GGGG
* * * **
221801 TAAAGTGGTTATTTTTGGAAAAATCAAGG
1 TAAAATGG-AATTTTT-GAAAGATCGGGG
* * *
221830 TCAAAAATGGAATTTTTGGAAGTTCAAGGG
1 T--AAAATGGAATTTTTGAAAGATC-GGGG
*
221860 TAAAATGATAATTTTTG
1 TAAAATG-GAATTTTTG
221877 GAAAAATCAG
Statistics
Matches: 181, Mismatches: 48, Indels: 39
0.68 0.18 0.15
Matches are distributed among these distances:
27 5 0.03
28 51 0.28
29 83 0.46
30 36 0.20
31 6 0.03
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (27 bp):
TAAAATGGAATTTTTGAAAGATCGGGG
Found at i:221839 original size:59 final size:58
Alignment explanation
Indices: 221538--221903 Score: 325
Period size: 58 Copynumber: 6.3 Consensus size: 58
221528 GAAAGTGTAG
** * * * * ** *
221538 GGTCAAAAATGGAATTTTTAAAAATTGAAGGGT-AAATAGTAGTTTTTGGAAAGTTTA
1 GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAAAATCA
** * ** * *
221595 GGGTTTAAAATGGAATTTTTTGACA-TTCGGGGGTAAAATGGTAATTTTT-GAAAGATCGG
1 -GGTCAAAAATGGAATTTTTGGA-AGTTCAAGGGTAAAATGGTAATTTTTGGAAAAATC-A
* ** * * *
221654 GGTCAAATATGGAATTTTTGGAAGTT-TGGAGGTAAAATGATAA-TTTTGGAAAAAACG
1 GGTCAAAAATGGAATTTTTGGAAGTTCAAG-GGTAAAATGGTAATTTTTGGAAAAATCA
* * * * *
221711 GTGTCAAAAATAGAA-TTTTGGAAGCTC-GGGCGTAAAACGGTAATTTTT-TAAAAATCGA
1 G-GTCAAAAATGGAATTTTTGGAAGTTCAAGG-GTAAAATGGTAATTTTTGGAAAAATC-A
* *
221769 GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAGTGGTTATTTTTGGAAAAATCAA
1 GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAAAATC-A
*
221828 GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGATAATTTTTGGAAAAATCA
1 GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAAAATCA
*
221886 GGTCAAAAATTGAATTTT
1 GGTCAAAAATGGAATTTT
221904 GTAAAGTTTT
Statistics
Matches: 254, Mismatches: 40, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
56 1 0.00
57 49 0.19
58 127 0.50
59 77 0.30
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (58 bp):
GGTCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAAAATCA
Found at i:221845 original size:30 final size:30
Alignment explanation
Indices: 221752--221903 Score: 122
Period size: 29 Copynumber: 5.2 Consensus size: 30
221742 GTAAAACGGT
* *
221752 AATTTTT-TAAAAATCGAGGTCAAAAATGG
1 AATTTTTGGAAAAATCAAGGTCAAAAATGG
** *
221781 AATTTTTGG-AAGTTCAAGGGT--AAAGTGG
1 AATTTTTGGAAAAATCAA-GGTCAAAAATGG
*
221809 TTATTTTTGGAAAAATCAAGGTCAAAAATGG
1 -AATTTTTGGAAAAATCAAGGTCAAAAATGG
** *
221840 AATTTTTGG-AAGTTCAAGGGT--AAAATGAT
1 AATTTTTGGAAAAATCAA-GGTCAAAAATG-G
*
221869 AATTTTTGGAAAAATC-AGGTCAAAAATTG
1 AATTTTTGGAAAAATCAAGGTCAAAAATGG
221898 AATTTT
1 AATTTT
221904 GTAAAGTTTT
Statistics
Matches: 95, Mismatches: 17, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
28 15 0.16
29 45 0.47
30 29 0.31
31 6 0.06
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (30 bp):
AATTTTTGGAAAAATCAAGGTCAAAAATGG
Found at i:223075 original size:22 final size:23
Alignment explanation
Indices: 223050--223093 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
223040 TTTAAAATTA
223050 ATATTTATTATTAATA-TTATTG
1 ATATTTATTATTAATACTTATTG
*
223072 ATATTTTTTATTAATACTTATT
1 ATATTTATTATTAATACTTATT
223094 AATGCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
ATATTTATTATTAATACTTATTG
Found at i:223150 original size:18 final size:18
Alignment explanation
Indices: 223127--223165 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
223117 TATTATTAAC
*
223127 ATTATTATTAATAATATT
1 ATTATTATTAATAAAATT
223145 ATTATTATTAATAAAATT
1 ATTATTATTAATAAAATT
223163 ATT
1 ATT
223166 TTTTCAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATTATTAATAAAATT
Found at i:223156 original size:15 final size:15
Alignment explanation
Indices: 223116--223157 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
223106 TACTTCTTAT
*
223116 TTATTATTAACATTA
1 TTATTATTAATATTA
*
223131 TTATTAATAATATTA
1 TTATTATTAATATTA
223146 TTATTATTAATA
1 TTATTATTAATA
223158 AAATTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTATTAATATTA
Found at i:223163 original size:15 final size:15
Alignment explanation
Indices: 223116--223165 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
223106 TACTTCTTAT
* *
223116 TTATTATTAACATTA
1 TTATTAATAAAATTA
223131 TTATTAATAATATTATTA
1 TTATTAATAA-A--ATTA
223149 TTATTAATAAAATTA
1 TTATTAATAAAATTA
223164 TT
1 TT
223166 TTTTCAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 15 0.50
17 1 0.03
18 14 0.47
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTAATAAAATTA
Found at i:223937 original size:17 final size:17
Alignment explanation
Indices: 223915--224006 Score: 114
Period size: 17 Copynumber: 5.4 Consensus size: 17
223905 ACTTTTATTT
*
223915 ATTTAAATTTATAATAA
1 ATTTAAATTTAAAATAA
*
223932 ATTTAAATTTAAAATTA
1 ATTTAAATTTAAAATAA
** *
223949 ATTTAAACCTAAATTAA
1 ATTTAAATTTAAAATAA
*
223966 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAATAA
223983 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
224000 ATTTAAA
1 ATTTAAA
224007 AATGGGTTTG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
16 3 0.05
17 57 0.92
18 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:223938 original size:6 final size:6
Alignment explanation
Indices: 223915--223978 Score: 64
Period size: 6 Copynumber: 11.2 Consensus size: 6
223905 ACTTTTATTT
* **
223915 ATTTAA ATTTATA A--TAA ATTTAA ATTTAA AATT-A ATTTAA ACCTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
223961 A-TTAA ATTTAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA A
223979 ACAAATTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
4 2 0.04
5 10 0.21
6 34 0.71
7 2 0.04
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (6 bp):
ATTTAA
Found at i:229781 original size:2 final size:2
Alignment explanation
Indices: 229774--229801 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
229764 TTCATCACAA
229774 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
229802 TTGGCTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:232228 original size:31 final size:31
Alignment explanation
Indices: 232171--232229 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
232161 AGTACAATTA
*
232171 TATACATAAAACTTTGATTGTAATTCAAATG
1 TATACATAAAACTTTAATTGTAATTCAAATG
* * *
232202 TATATATAAAACTTTAATTTTGATTCAA
1 TATACATAAAACTTTAATTGTAATTCAA
232230 TCATACACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
TATACATAAAACTTTAATTGTAATTCAAATG
Found at i:233099 original size:19 final size:19
Alignment explanation
Indices: 233070--233114 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
233060 ATATTTAAGG
233070 AAAAT-AAAATTAAAAATA
1 AAAATAAAAATTAAAAATA
* *
233088 AAAATAAAAATTTAATATA
1 AAAATAAAAATTAAAAATA
*
233107 TAAATAAA
1 AAAATAAA
233115 TGTGAATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAATAAAAATTAAAAATA
Found at i:238701 original size:109 final size:109
Alignment explanation
Indices: 238510--238729 Score: 431
Period size: 109 Copynumber: 2.0 Consensus size: 109
238500 ACATAATATA
238510 TATTAAGAAATGGATTCCATGCATAATTCATCCATCCCATGATAATTTATCATCCATATACATTT
1 TATTAAGAAATGGATTCCATGCATAATTCATCCATCCCATGATAATTTATCATCCATATACATTT
238575 CATATATGCTTATTCATCTTTTTATATCATATACACTAAATCTT
66 CATATATGCTTATTCATCTTTTTATATCATATACACTAAATCTT
*
238619 TATTAAGAACTGGATTCCATGCATAATTCATCCATCCCATGATAATTTATCATCCATATACATTT
1 TATTAAGAAATGGATTCCATGCATAATTCATCCATCCCATGATAATTTATCATCCATATACATTT
238684 CATATATGCTTATTCATCTTTTTATATCATATACACTAAATCTT
66 CATATATGCTTATTCATCTTTTTATATCATATACACTAAATCTT
238728 TA
1 TA
238730 AACATACCTT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (109 bp):
TATTAAGAAATGGATTCCATGCATAATTCATCCATCCCATGATAATTTATCATCCATATACATTT
CATATATGCTTATTCATCTTTTTATATCATATACACTAAATCTT
Found at i:244583 original size:16 final size:16
Alignment explanation
Indices: 244543--244589 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 16
244533 TAAACTAACA
*
244543 AATAAAATGCAACGAC
1 AATAAAATGCAATGAC
244559 AACTAAAATGCAATGAC
1 AA-TAAAATGCAATGAC
*
244576 AATAAAATGAAATG
1 AATAAAATGCAATG
244590 CATGCAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (16 bp):
AATAAAATGCAATGAC
Found at i:254446 original size:17 final size:17
Alignment explanation
Indices: 254409--254446 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
254399 TAAAAATTTA
*
254409 AATT-ATCTCAAGTTTT
1 AATTAATCTCAAGTTCT
*
254425 TATTAATCTCAAGTTCT
1 AATTAATCTCAAGTTCT
254442 AATTA
1 AATTA
254447 TTTGACAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (17 bp):
AATTAATCTCAAGTTCT
Found at i:254829 original size:31 final size:30
Alignment explanation
Indices: 254794--254852 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
254784 CAGAAATATC
* *
254794 AATTTATTC-TTTATTTTAATATATAAAAATT
1 AATTTACTCATTT-TTTTAA-ATAAAAAAATT
254825 AATTTACTCATTTTTTTAAATAAAAAAA
1 AATTTACTCATTTTTTTAAATAAAAAAA
254853 ATAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 14 0.56
32 3 0.12
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTTACTCATTTTTTTAAATAAAAAAATT
Found at i:255662 original size:56 final size:61
Alignment explanation
Indices: 255602--255734 Score: 159
Period size: 56 Copynumber: 2.3 Consensus size: 61
255592 ATTATAAAAA
* * * *
255602 AAAAAAATCAATTAAGCCCCTTAACTTCA-T-GC-T-CAATTGAGTTTTTGTTGTTAAT-C
1 AAAAAAATCAATTAAGCCCCTCAACTTAATTCGCATCCAATTGAATTGTTGTTGTTAATAC
** * *
255658 AAAAAAATCAATTAAATCCCTCAACTTAATTCTCATCCAATTGAATTGTTGTTGTTAATAG
1 AAAAAAATCAATTAAGCCCCTCAACTTAATTCGCATCCAATTGAATTGTTGTTGTTAATAC
255719 AAAAAAATCAATTAAG
1 AAAAAAATCAATTAAG
255735 TTTATCCGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
56 25 0.40
57 1 0.02
58 1 0.02
59 1 0.02
60 20 0.32
61 15 0.24
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.35
Consensus pattern (61 bp):
AAAAAAATCAATTAAGCCCCTCAACTTAATTCGCATCCAATTGAATTGTTGTTGTTAATAC
Found at i:255930 original size:19 final size:19
Alignment explanation
Indices: 255859--255930 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
255849 TAAATAATAT
* *
255859 TAAAAATTATATAAACCTA
1 TAAATATTATAAAAACCTA
*
255878 TAAGA-ATTATAAAAACTTA
1 TAA-ATATTATAAAAACCTA
255897 TAAATATTCAT-AAAACCTA
1 TAAATATT-ATAAAAACCTA
255916 TAAATATTATAAAAA
1 TAAATATTATAAAAA
255931 AATTATAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 3 0.07
19 40 0.87
20 3 0.07
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.32
Consensus pattern (19 bp):
TAAATATTATAAAAACCTA
Found at i:255937 original size:20 final size:20
Alignment explanation
Indices: 255883--255973 Score: 64
Period size: 20 Copynumber: 4.6 Consensus size: 20
255873 ACCTATAAGA
*
255883 ATTAT-AAAAACTTATAAAT
1 ATTATAAAAAAATTATAAAT
**
255902 ATTCAT--AAAACCTATAAAT
1 ATT-ATAAAAAAATTATAAAT
*
255921 ATTATAAAAAAATTATAAAA
1 ATTATAAAAAAATTATAAAT
* * *
255941 ATGTA-AAAAAATTTATACAG
1 AT-TATAAAAAAATTATAAAT
255961 ATTATTAAAAAAA
1 ATTA-TAAAAAAA
255974 AGGCATTTAG
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
18 2 0.03
19 20 0.34
20 28 0.48
21 8 0.14
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.32
Consensus pattern (20 bp):
ATTATAAAAAAATTATAAAT
Found at i:255940 original size:9 final size:9
Alignment explanation
Indices: 255859--255953 Score: 64
Period size: 10 Copynumber: 9.9 Consensus size: 9
255849 TAAATAATAT
255859 TAAAAATTA
1 TAAAAATTA
**
255868 TATAAACCTA
1 TA-AAAATTA
*
255878 TAAGAATTA
1 TAAAAATTA
255887 TAAAAACTTA
1 TAAAAA-TTA
*
255897 TAAATATTCA
1 TAAAAATT-A
**
255907 TAAAACCTA
1 TAAAAATTA
*
255916 TAAATATTA
1 TAAAAATTA
255925 TAAAAAAATTA
1 T--AAAAATTA
255936 TAAAAATGTA
1 TAAAAAT-TA
*
255946 AAAAAATT
1 TAAAAATT
255954 TATACAGATT
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
9 28 0.43
10 29 0.45
11 8 0.12
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:256615 original size:9 final size:9
Alignment explanation
Indices: 256591--256715 Score: 58
Period size: 9 Copynumber: 13.0 Consensus size: 9
256581 TATATATTGC
256591 AATTTTATAT
1 AATTTT-TAT
* *
256601 ATTTTTTAG
1 AATTTTTAT
*
256610 AA-TTTTAC
1 AATTTTTAT
*
256618 AAGTTTTAT
1 AATTTTTAT
256627 AATTTCTTAT
1 AATTT-TTAT
256637 AATTTTT-T
1 AATTTTTAT
256645 AATTTTTTTAAT
1 AA--TTTTT-AT
256657 GAATTTTTTTAAT
1 -AA--TTTTT-AT
*
256670 GAATTTTTTT
1 -AATTTTTAT
*
256680 ATTTTTTAT
1 AATTTTTAT
*
256689 GATTTTTAT
1 AATTTTTAT
*
256698 -AGTTTTAT
1 AATTTTTAT
256706 GAATTTTTAT
1 -AATTTTTAT
256716 GAGAAAAATG
Statistics
Matches: 93, Mismatches: 13, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
8 17 0.18
9 28 0.30
10 27 0.29
11 5 0.05
12 1 0.01
13 15 0.16
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:256666 original size:14 final size:13
Alignment explanation
Indices: 256645--256680 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
256635 ATAATTTTTT
256645 AATTTTTTTAATG
1 AATTTTTTTAATG
256658 AATTTTTTTAATG
1 AATTTTTTTAATG
256671 AATTTTTTTA
1 AATTTTTTTA
256681 TTTTTTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (13 bp):
AATTTTTTTAATG
Found at i:256693 original size:18 final size:19
Alignment explanation
Indices: 256661--256715 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
256651 TTTAATGAAT
*
256661 TTTTTTAATGAATTTTTTTA
1 TTTTTT-ATGAATTTTTATA
256681 TTTTTTATG-ATTTTTATA
1 TTTTTTATGAATTTTTATA
*
256699 -GTTTTATGAATTTTTAT
1 TTTTTTATGAATTTTTAT
256716 GAGAAAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 7 0.22
18 16 0.50
19 3 0.09
20 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTTTATGAATTTTTATA
Found at i:257201 original size:44 final size:45
Alignment explanation
Indices: 257131--257219 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 45
257121 TGACCATGCA
* * *
257131 ATGGCTGACACCCCTATTTATTTGAT-AAAAAATCAAATTTTTGC
1 ATGGCCGACACCCCTAATTATCTGATAAAAAAATCAAATTTTTGC
257175 ATGGCCGACACCCCTAATTATCTGATAAAAAAAATCAAATTTTTG
1 ATGGCCGACACCCCTAATTATCTGAT-AAAAAAATCAAATTTTTG
257220 GATGTTGGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 23 0.57
46 17 0.43
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (45 bp):
ATGGCCGACACCCCTAATTATCTGATAAAAAAATCAAATTTTTGC
Found at i:257245 original size:34 final size:35
Alignment explanation
Indices: 257197--257263 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
257187 CCTAATTATC
257197 TGATAAAAAAAATCAAATTTTTGGATGTTGGCCAT
1 TGATAAAAAAAATCAAATTTTTGGATGTTGGCCAT
*
257232 TGAT-AAAAAAATCAAATTTTTGGGTGTTGGCC
1 TGATAAAAAAAATCAAATTTTTGGATGTTGGCC
257264 TTGCAATGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 27 0.87
35 4 0.13
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (35 bp):
TGATAAAAAAAATCAAATTTTTGGATGTTGGCCAT
Found at i:257388 original size:59 final size:60
Alignment explanation
Indices: 257235--257403 Score: 234
Period size: 60 Copynumber: 2.8 Consensus size: 60
257225 TGGCCATTGA
* * *
257235 TAAAAAAATCAAATTTTTGGGTGTTGGCCTTGCAATGGCCGACACCCTTAATTATCTGAT
1 TAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACACCCCTAATTATCTGAT
* *
257295 AAAAAAAATCAAATTTTTGGGTGTTGGA-AATGCAATGGCCGACACCCCTAATTATCTG-T
1 TAAAAAAATCAAATTTTTGGGTGTT-GACCATGCAATGGCCGACACCCCTAATTATCTGAT
* * *
257354 TAAAAAAATTAAATTTTTGGGTGTTGACCATGCAATAGCTGACACTCCCT
1 TAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACAC-CCCT
257404 TTTTCAGATA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
58 2 0.02
59 38 0.40
60 55 0.57
61 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (60 bp):
TAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACACCCCTAATTATCTGAT
Found at i:257418 original size:59 final size:58
Alignment explanation
Indices: 257232--257419 Score: 204
Period size: 59 Copynumber: 3.2 Consensus size: 58
257222 TGTTGGCCAT
* *
257232 TGAT-AAAAAAATCAAATTTTTGGGTGTTGGCCTTGCAATGGCCGACA-CCCTTAATTATC
1 TGATAAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACACCCCTT--TT-TC
* *
257291 TGATAAAAAAAATCAAATTTTTGGGTGTTGGA-AATGCAATGGCCGACACCCCTAATTATC
1 TGATAAAAAAAATCAAATTTTTGGGTGTT-GACCATGCAATGGCCGACACCCCT--TTTTC
* * * *
257351 TG-TTAAAAAAATTAAATTTTTGGGTGTTGACCATGCAATAGCTGACACTCCCTTTTTC
1 TGATAAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACAC-CCCTTTTTC
*
257409 AGATAAAAAAA
1 TGATAAAAAAA
257420 TTTTAAAATT
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
58 7 0.06
59 49 0.45
60 46 0.42
61 6 0.06
63 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (58 bp):
TGATAAAAAAAATCAAATTTTTGGGTGTTGACCATGCAATGGCCGACACCCCTTTTTC
Found at i:261373 original size:17 final size:17
Alignment explanation
Indices: 261351--261383 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
261341 GTAAAAACTA
261351 ATTTGAAAATTAATTTC
1 ATTTGAAAATTAATTTC
261368 ATTTGAAAATTAATTT
1 ATTTGAAAATTAATTT
261384 AAGCTGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (17 bp):
ATTTGAAAATTAATTTC
Found at i:261391 original size:17 final size:17
Alignment explanation
Indices: 261354--261399 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
261344 AAAACTAATT
* **
261354 TGAAAATTAATTTCATT
1 TGAAAATTAATTTAAGC
261371 TGAAAATTAATTTAAGC
1 TGAAAATTAATTTAAGC
261388 TG-AAATTAATTT
1 TGAAAATTAATTT
261400 GAAAATGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (17 bp):
TGAAAATTAATTTAAGC
Found at i:261633 original size:83 final size:84
Alignment explanation
Indices: 261523--261735 Score: 293
Period size: 83 Copynumber: 2.5 Consensus size: 84
261513 AATTTAACAT
* * * * *
261523 TATTTAAATAAAAAAGATTATTATTATATTTCAATTTATATAAAATATTGTGTTTATTTGACAAT
1 TATTTAAAT-AAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
*
261588 ACATTATTATCAAATTTT-CA
64 ACATTATTATCAAATTTTAAA
***
261608 TATTTAAATTGCAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATAC
1 TATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATAC
* *
261673 ATTATTTTCTAATTTTAAA
66 ATTATTATCAAATTTTAAA
*
261692 TATTTAAATAAAAAAATATTATTATATTACAATTTTTATCAAAT
1 TATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAAT
261736 TTTAAATTTA
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
83 60 0.54
84 43 0.38
85 9 0.08
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.47
Consensus pattern (84 bp):
TATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATAC
ATTATTATCAAATTTTAAA
Found at i:264073 original size:30 final size:31
Alignment explanation
Indices: 264039--264121 Score: 98
Period size: 30 Copynumber: 2.7 Consensus size: 31
264029 ATTTCAATTT
*
264039 TATTTTAAATTTAATTTATAATTTTC-TGTA
1 TATTTTAAATTTAATTTCTAATTTTCGTGTA
* * *
264069 TATTTTCATTTTAATTTCTAA-TTTCGTTTA
1 TATTTTAAATTTAATTTCTAATTTTCGTGTA
* *
264099 TCTTTTAAATTTCATTTCTAATT
1 TATTTTAAATTTAATTTCTAATT
264122 ATTATTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
29 4 0.09
30 38 0.88
31 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.61
Consensus pattern (31 bp):
TATTTTAAATTTAATTTCTAATTTTCGTGTA
Found at i:265077 original size:60 final size:60
Alignment explanation
Indices: 264926--265435 Score: 342
Period size: 62 Copynumber: 8.4 Consensus size: 60
264916 AGGGGAAGTT
* * * * * ** * *
264926 GGTGTCGGCAATTGCATGACCAACACTAAAAAAAATT-AATTATTTACCAAATAAAAA-AG
1 GGTGTCGGCCATTACATGACCAACAC-AAAAAAATTTGAATTTTTTATCTGACAAAAAGGG
* ** *
264985 GGTGTCGGTCATGGCATGACCAACACCAAAAAAAATTTGAATTTTTTATTTGACAAAAAGGG
1 GGTGTCGGCCATTACATGACCAACA-C-AAAAAAATTTGAATTTTTTATCTGACAAAAAGGG
* * * ** * *
265047 GGTGTCGGCCATTATATGACCAACACAAAAAAA-TTGATTTTTTTACCAAATAAAAGAGGA
1 GGTGTCGGCCATTACATGACCAACACAAAAAAATTTGAATTTTTTATCTGACAAAA-AGGG
* * ** *
265107 GGTGTAGGCCATGACATGACCAACACAAAAAAATTCAAATTTTTTACCTGACAAAAAAAGGG
1 GGTGTCGGCCATTACATGACCAACACAAAAAAATTTGAATTTTTTATCTGAC--AAAAAGGG
** ** * * *
265169 GGTGTCGGCCATGGCATGACCAACACTCAAAATTTTG-ATTTTTTATTCAGATAAAAA-GG
1 GGTGTCGGCCATTACATGACCAACACAAAAAAATTTGAATTTTTTA-TCTGACAAAAAGGG
* * * *
265228 GTTGTCAGCCA-TGCAATGGCCAACACAAAAAAAATTTGAAATTTTTTTATCTG--AAAAAGGG
1 GGTGTCGGCCATTAC-ATGACCAACAC-AAAAAAATTTG-AA-TTTTTTATCTGACAAAAAGGG
* * * * *
265289 GTTGTCGGTCATTGCATGACTAACATC-AAAAAA-TTGAATTTTTTATCTGACAAAAAGGT
1 GGTGTCGGCCATTACATGACCAACA-CAAAAAAATTTGAATTTTTTATCTGACAAAAAGGG
* * * ** * * *
265348 GGTGTCGGCTATTACACGGCCAACACCCAAAAATTTGATTTTTTTTTATCAGATTAAAAA-GG
1 GGTGTCGGCCATTACATGACCAACACAAAAAAATTTGA--ATTTTTTATCTGA-CAAAAAGGG
*
265410 GGTGTCGGCCA-TGCAATGACCAACAC
1 GGTGTCGGCCATTAC-ATGACCAACAC
265436 CAATTTTTTT
Statistics
Matches: 355, Mismatches: 72, Indels: 45
0.75 0.15 0.10
Matches are distributed among these distances:
57 11 0.03
58 5 0.01
59 92 0.26
60 78 0.22
61 56 0.16
62 97 0.27
63 16 0.05
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (60 bp):
GGTGTCGGCCATTACATGACCAACACAAAAAAATTTGAATTTTTTATCTGACAAAAAGGG
Found at i:265369 original size:120 final size:118
Alignment explanation
Indices: 264926--265434 Score: 415
Period size: 120 Copynumber: 4.2 Consensus size: 118
264916 AGGGGAAGTT
* * * * * *
264926 GGTGTCGGCAATTGCATGACCAACACTAAAAAAAATT-AATTATTTACCAAATAAAAAAGGGTGT
1 GGTGTCGGCCATTGCATGACCAACA-T-CAAAAAATTGAATTTTTTATCAGATAAAAAGGGGTGT
* ** * *
264990 CGGTCATGGCATGACCAACACCAAAAAAAATTTG-AATTTTTTATTTGACAAAAAGGG
64 CGGCCATTACATGGCCAACA-C-AAAAAAATTTGAAATTTTTTATCTGA-AAAAAGGG
** * * *
265047 GGTGTCGGCCATTATATGACCAACA-CAAAAAAATTGATTTTTTTACCAAATAAAAGAGGAGGTG
1 GGTGTCGGCCATTGCATGACCAACATC-AAAAAATTGAATTTTTTATCAGATAAAA-AGG-GGTG
* * * * *
265111 TAGGCCATGACATGACCAACACAAAAAAA-TTCAAATTTTTTACCTGACAAAAAAAGGG
63 TCGGCCATTACATGGCCAACACAAAAAAATTTGAAATTTTTTATCTG---AAAAAAGGG
* ** *
265169 GGTGTCGGCCATGGCATGACCAACACTCAAAATTTTG-ATTTTTTATTCAGATAAAAAGGGTTGT
1 GGTGTCGGCCATTGCATGACCAACA-TCAAAAAATTGAATTTTTTA-TCAGATAAAAAGGGGTGT
* *
265233 CAGCCA-TGCAATGGCCAACACAAAAAAAATTTGAAATTTTTTTATCTG-AAAAAGGG
64 CGGCCATTAC-ATGGCCAACAC-AAAAAAATTTGAAA-TTTTTTATCTGAAAAAAGGG
* * * * *
265289 GTTGTCGGTCATTGCATGACTAACATCAAAAAATTGAATTTTTTATCTGACAAAAAGGTGGTGTC
1 GGTGTCGGCCATTGCATGACCAACATCAAAAAATTGAATTTTTTATCAGATAAAAAGG-GGTGTC
* * ** ** *
265354 GGCTATTACACGGCCAACACCCAAAAATTTGATTTTTTTTTATCAGATTAAAAA-GG
65 GGCCATTACATGGCCAACACAAAAAAATTTGA-AATTTTTTATCTGA--AAAAAGGG
265410 GGTGTCGGCCA-TGCAATGACCAACA
1 GGTGTCGGCCATTGC-ATGACCAACA
265435 CCAATTTTTT
Statistics
Matches: 315, Mismatches: 50, Indels: 46
0.77 0.12 0.11
Matches are distributed among these distances:
119 50 0.16
120 94 0.30
121 65 0.21
122 74 0.23
123 21 0.07
124 11 0.03
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (118 bp):
GGTGTCGGCCATTGCATGACCAACATCAAAAAATTGAATTTTTTATCAGATAAAAAGGGGTGTCG
GCCATTACATGGCCAACACAAAAAAATTTGAAATTTTTTATCTGAAAAAAGGG
Found at i:272496 original size:137 final size:137
Alignment explanation
Indices: 272250--272526 Score: 527
Period size: 137 Copynumber: 2.0 Consensus size: 137
272240 CCCACGATTG
*
272250 AAGAGTATACTGCTTTACTTCATTGCCCTAAGATTCAGGTAAAAAAAGCCTACTTAAGAGCTGCT
1 AAGAGTATACTGCTTTACTTCATTGCCCTAAGATTCAAGTAAAAAAAGCCTACTTAAGAGCTGCT
272315 AGTGTCTCAAAATTTCTTAAGAAATTGATGAACATTACGAGAATGAGCAAGCAATGGGTTACAAC
66 AGTGTCTCAAAATTTCTTAAGAAATTGATGAACATTACGAGAATGAGCAAGCAATGGGTTACAAC
272380 TCGAATT
131 TCGAATT
* *
272387 AAGAGTATACTGCTTTACTTCATTTCCCTAAGATTCAAGTAAACAAAGCCTACTTAAGAGCTGCT
1 AAGAGTATACTGCTTTACTTCATTGCCCTAAGATTCAAGTAAAAAAAGCCTACTTAAGAGCTGCT
272452 AGTGTCTCAAAATTTCTTAAGAAATTGATGAACATTACGAGAATGAGCAAGCAATGGGTTACAAC
66 AGTGTCTCAAAATTTCTTAAGAAATTGATGAACATTACGAGAATGAGCAAGCAATGGGTTACAAC
272517 TCGAATT
131 TCGAATT
272524 AAG
1 AAG
272527 GTGAAGGGCA
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (137 bp):
AAGAGTATACTGCTTTACTTCATTGCCCTAAGATTCAAGTAAAAAAAGCCTACTTAAGAGCTGCT
AGTGTCTCAAAATTTCTTAAGAAATTGATGAACATTACGAGAATGAGCAAGCAATGGGTTACAAC
TCGAATT
Found at i:273427 original size:3 final size:3
Alignment explanation
Indices: 273419--273447 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
273409 TAGAGACATT
273419 AGA AGA AGA AGA AGA AGA AGA AGA A-A AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
273448 TGCAGTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:282137 original size:12 final size:12
Alignment explanation
Indices: 282120--282156 Score: 56
Period size: 12 Copynumber: 2.9 Consensus size: 12
282110 CCTGTACCAA
282120 TTTTATTTTATT
1 TTTTATTTTATT
282132 TTTTATTTTATT
1 TTTTATTTTATT
282144 TATTTATATTTAT
1 T-TTTAT-TTTAT
282157 AAAATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.57
13 5 0.22
14 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:283861 original size:37 final size:37
Alignment explanation
Indices: 283820--283893 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
283810 AATTTTTTCT
283820 TTGGACTGAGATAATTAAATATCCTATTTTAAAATTA
1 TTGGACTGAGATAATTAAATATCCTATTTTAAAATTA
283857 TTGGACTGAGATAATTAAATATCCTATTTTAAAATTA
1 TTGGACTGAGATAATTAAATATCCTATTTTAAAATTA
283894 AAAATACAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (37 bp):
TTGGACTGAGATAATTAAATATCCTATTTTAAAATTA
Found at i:285740 original size:75 final size:76
Alignment explanation
Indices: 285649--285800 Score: 202
Period size: 77 Copynumber: 2.0 Consensus size: 76
285639 TGCTACTTAC
* * *
285649 TCATCAATCAATAAGTTTTTGGTGT-C-CAA-CTTTATTTTATTTAGTAACTCACACAACTTAAA
1 TCATCAATAAAGAAGTTTCT-GTGTCCTCAAGCTTTATTTT-TTTAGTAACTCACACAACTTAAA
*
285711 ATGTCACTTCTAG
64 ATGACACTTCTAG
* *
285724 TCATCAATAAAGAAGTTTCTGTGTCCTTCAAGTTTTATTTTTTTAGTTACTCACACAACTTAAAA
1 TCATCAATAAAGAAGTTTCTGTGTCC-TCAAGCTTTATTTTTTTAGTAACTCACACAACTTAAAA
285789 TGACACTTCTAG
65 TGACACTTCTAG
285801 ACATTCTTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
74 4 0.06
75 18 0.27
77 37 0.55
78 8 0.12
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (76 bp):
TCATCAATAAAGAAGTTTCTGTGTCCTCAAGCTTTATTTTTTTAGTAACTCACACAACTTAAAAT
GACACTTCTAG
Found at i:294632 original size:19 final size:19
Alignment explanation
Indices: 294608--294651 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
294598 GGTATTTTCT
294608 ATTAATACCATTAGTTGCA
1 ATTAATACCATTAGTTGCA
* *
294627 ATTAATGCTATTAGTTGCA
1 ATTAATACCATTAGTTGCA
294646 ATTAAT
1 ATTAAT
294652 GCAGTTGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (19 bp):
ATTAATACCATTAGTTGCA
Found at i:294652 original size:19 final size:19
Alignment explanation
Indices: 294617--294653 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
294607 TATTAATACC
294617 ATTAGTTGCAATTAATGCT
1 ATTAGTTGCAATTAATGCT
294636 ATTAGTTGCAATTAATGC
1 ATTAGTTGCAATTAATGC
294654 AGTTGTGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (19 bp):
ATTAGTTGCAATTAATGCT
Found at i:300063 original size:20 final size:20
Alignment explanation
Indices: 300038--300076 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
300028 CAAACTCTTT
300038 AAAAAT-ATTTAAACAATTAC
1 AAAAATAATTTAAA-AATTAC
300058 AAAAATAATTTAAAAATTA
1 AAAAATAATTTAAAAATTA
300077 ATTTTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATAATTTAAAAATTAC
Found at i:304032 original size:19 final size:19
Alignment explanation
Indices: 304008--304048 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
303998 ACCTCATATA
*
304008 TTATATTCTATAATTAATT
1 TTATATTCTATAAGTAATT
304027 TTATATTCTATAAGTAATT
1 TTATATTCTATAAGTAATT
304046 TTA
1 TTA
304049 AAGACTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (19 bp):
TTATATTCTATAAGTAATT
Found at i:307004 original size:18 final size:16
Alignment explanation
Indices: 306981--307016 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
306971 CTTAGTAAAT
306981 ATTAAATTGAGGAATGAA
1 ATTAAATTGA--AATGAA
306999 ATTAAATTGAAATGAA
1 ATTAAATTGAAATGAA
307015 AT
1 AT
307017 GGTATTTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (16 bp):
ATTAAATTGAAATGAA
Found at i:307631 original size:52 final size:52
Alignment explanation
Indices: 307553--307791 Score: 370
Period size: 52 Copynumber: 4.6 Consensus size: 52
307543 TAAATGCAAA
* *
307553 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
*
307605 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATGCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
307657 AGGTCCGATGACCATGTGTTATTGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * * *
307709 AAGTCCGATGACTATGTGTCATCGTGAGCATATGAATCCTTTTCAGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
307761 AGGTCCAATGACTATGTGTCAACGTGAGTAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTAT
307792 CAAATGAGAA
Statistics
Matches: 169, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 169 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:309704 original size:13 final size:13
Alignment explanation
Indices: 309686--309710 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
309676 TATCTTTCTC
309686 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
309699 CTTTTTTTTTTT
1 CTTTTTTTTTTT
309711 ATGACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:317838 original size:28 final size:29
Alignment explanation
Indices: 317773--317840 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
317763 TTATTTTAAA
* * * *
317773 TATATAATATTATATATTTAAATTTTTATT
1 TATAT-ATTTTATATATTTAAAATATAATT
317803 TATCATATTTTAT-TATTTAAAATATAATT
1 TAT-ATATTTTATATATTTAAAATATAATT
317832 TATATATTT
1 TATATATTT
317841 GAATTAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 16 0.48
30 9 0.27
31 2 0.06
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (29 bp):
TATATATTTTATATATTTAAAATATAATT
Found at i:317853 original size:20 final size:20
Alignment explanation
Indices: 317809--317854 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
317799 TATTTATCAT
317809 ATTTTATTATTTAAAATATA
1 ATTTTATTATTTAAAATATA
* *
317829 A-TTTATATATTTGAATTA-A
1 ATTTTAT-TATTTAAAATATA
317848 ATTTTAT
1 ATTTTAT
317855 GAATAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTATTATTTAAAATATA
Found at i:320264 original size:35 final size:34
Alignment explanation
Indices: 320207--320311 Score: 92
Period size: 35 Copynumber: 3.1 Consensus size: 34
320197 CAATTGATAA
*
320207 GTATGAAAATTTAAGG-GAAAATTAAAGAAACACCC
1 GTAT-AAAAATTAAGGAG-AAATTAAAGAAACACCC
**
320242 GTATAAAAAATTAAGGAGAAATTAAAGAGGCACCC
1 GTAT-AAAAATTAAGGAGAAATTAAAGAAACACCC
* * * *
320277 ATATAGAGA--AA-GAGAAATTGAAGAAACACCC
1 GTATAAAAATTAAGGAGAAATTAAAGAAACACCC
320308 GTAT
1 GTAT
320312 GTATTAAGGG
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
31 20 0.34
32 2 0.03
34 3 0.05
35 32 0.55
36 1 0.02
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.18
Consensus pattern (34 bp):
GTATAAAAATTAAGGAGAAATTAAAGAAACACCC
Found at i:324261 original size:27 final size:27
Alignment explanation
Indices: 324229--324318 Score: 162
Period size: 27 Copynumber: 3.3 Consensus size: 27
324219 TCTTACAATC
*
324229 CCAGAATCAGAATAACGCTCTTTCAAG
1 CCAGAATCAGAATAACGCTCTTTCGAG
*
324256 CCAGAATCAGAATAACACTCTTTCGAG
1 CCAGAATCAGAATAACGCTCTTTCGAG
324283 CCAGAATCAGAATAACGCTCTTTCGAG
1 CCAGAATCAGAATAACGCTCTTTCGAG
324310 CCAGAATCA
1 CCAGAATCA
324319 AGTTACTCCT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (27 bp):
CCAGAATCAGAATAACGCTCTTTCGAG
Found at i:328924 original size:17 final size:18
Alignment explanation
Indices: 328902--328935 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
328892 ATAATTGCAC
*
328902 TTTAAAT-TTTAATTATT
1 TTTAAATGTATAATTATT
328919 TTTAAATGTATAATTAT
1 TTTAAATGTATAATTAT
328936 CACAAATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAAATGTATAATTATT
Found at i:337917 original size:30 final size:30
Alignment explanation
Indices: 337838--338050 Score: 129
Period size: 30 Copynumber: 7.1 Consensus size: 30
337828 AAAACAAAAA
* *
337838 AGGGGTCAAAAAT-AAAATTTTGGAAAGTTT
1 AGGGGTC-AAAATGTAAATTTTAGAAAGTTT
* * *
337868 -GGGGGCCAAAT-TCAAATTTTAGAGAGTTT
1 AGGGGTCAAAATGT-AAATTTTAGAAAGTTT
*
337897 AGGTGTCAAAATGTAAATTTT-GAAAAGTTT
1 AGGGGTCAAAATGTAAATTTTAG-AAAGTTT
* *
337927 AGGGGT-AAAATCTAAATATCTAGAAAGTTT
1 AGGGGTCAAAATGTAAAT-TTTAGAAAGTTT
* * *
337957 A-TGG-CCAAAT-TCAAATTTTTA-AAGAGTTA
1 AGGGGTCAAAATGT-AAA-TTTTAGAA-AGTTT
* *
337986 AGGGGTCAAAATGTAATTTTTGGAAAGTTT
1 AGGGGTCAAAATGTAAATTTTAGAAAGTTT
* * * * *
338016 AGAGGGTTAAAATGTTATTTTTGGAAAGTTC
1 AG-GGGTCAAAATGTAAATTTTAGAAAGTTT
338047 AGGG
1 AGGG
338051 ACTTATTGGG
Statistics
Matches: 144, Mismatches: 24, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
28 7 0.05
29 47 0.33
30 51 0.35
31 38 0.26
32 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (30 bp):
AGGGGTCAAAATGTAAATTTTAGAAAGTTT
Found at i:337954 original size:89 final size:91
Alignment explanation
Indices: 337860--338028 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 91
337850 TAAAATTTTG
* * * *
337860 GAAAGTTTGGGGGCCAAATTCAAA-TTTTAGAGAGTTTAGGTGTCAAAATGTAAATTTTGAAAAG
1 GAAAGTTT-AGGGCCAAATTCAAATTTTTAAAGAGTTAAGGGGTCAAAATGTAAATTTTGAAAAG
337924 TTTAG-GGG-TAAAATCTAAATATCTA
65 TTTAGAGGGTTAAAATCTAAATATCTA
* * *
337949 GAAAGTTTATGGCCAAATTCAAATTTTTAAAGAGTTAAGGGGTCAAAATGTAATTTTTGGAAAGT
1 GAAAGTTTAGGGCCAAATTCAAATTTTTAAAGAGTTAAGGGGTCAAAATGTAAATTTTGAAAAGT
338014 TTAGAGGGTTAAAAT
66 TTAGAGGGTTAAAAT
338029 GTTATTTTTG
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 13 0.19
89 48 0.69
90 3 0.04
91 6 0.09
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.33
Consensus pattern (91 bp):
GAAAGTTTAGGGCCAAATTCAAATTTTTAAAGAGTTAAGGGGTCAAAATGTAAATTTTGAAAAGT
TTAGAGGGTTAAAATCTAAATATCTA
Found at i:344712 original size:21 final size:21
Alignment explanation
Indices: 344683--344736 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
344673 GGAGTTTTTA
344683 GTATCGGTAGAAGCATGATTT
1 GTATCGGTAGAAGCATGATTT
*
344704 GTATTGGTA-ACAGCATGATTT
1 GTATCGGTAGA-AGCATGATTT
*
344725 GTACCGGTAGAA
1 GTATCGGTAGAA
344737 ATTATACTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGCATGATTT
Found at i:349569 original size:21 final size:22
Alignment explanation
Indices: 349545--349603 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 22
349535 TAGAAATAAG
349545 ACTTGTTTCGGTAGAAGC-GCC
1 ACTTGTTTCGGTAGAAGCTGCC
*
349566 ACTTGTTTCGGTAGAA-CTGTC
1 ACTTGTTTCGGTAGAAGCTGCC
* *
349587 ACTTGTATCGATAGAAG
1 ACTTGTTTCGGTAGAAG
349604 TCTTCACTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (22 bp):
ACTTGTTTCGGTAGAAGCTGCC
Found at i:354581 original size:59 final size:59
Alignment explanation
Indices: 354489--354605 Score: 198
Period size: 59 Copynumber: 2.0 Consensus size: 59
354479 TAGACATTAA
*
354489 AATGGTAACGGAAAGATGATGTGACAGTTTTTAATATAGGCATAATAGCAACTTTAACT
1 AATGGTAACGGAAAGATGATGTGACAGTTTTTAAGATAGGCATAATAGCAACTTTAACT
* * *
354548 AATGGTAATGGAAAGATGATGTGATAGTTTTTAAGATAGGCATAATAGTAACTTTAAC
1 AATGGTAACGGAAAGATGATGTGACAGTTTTTAAGATAGGCATAATAGCAACTTTAAC
354606 CCTCAACGTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (59 bp):
AATGGTAACGGAAAGATGATGTGACAGTTTTTAAGATAGGCATAATAGCAACTTTAACT
Found at i:355137 original size:21 final size:22
Alignment explanation
Indices: 355108--355149 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
355098 AATTTAACCT
* *
355108 AATTTATAAATGAA-AGAAATC
1 AATTAATAAATAAATAGAAATC
355129 AATTAATAAATAAATAGAAAT
1 AATTAATAAATAAATAGAAAT
355150 AAATCAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (22 bp):
AATTAATAAATAAATAGAAATC
Found at i:357215 original size:16 final size:17
Alignment explanation
Indices: 357172--357216 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
357162 TTCCAAATAT
*
357172 GAGTTATTCTCAACATA
1 GAGTTATTCTAAACATA
357189 GAAGTTATTCTAAACA-A
1 G-AGTTATTCTAAACATA
*
357206 GAGTTGTTCTA
1 GAGTTATTCTA
357217 TTTGGTGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 3 0.12
18 13 0.52
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (17 bp):
GAGTTATTCTAAACATA
Found at i:363762 original size:17 final size:15
Alignment explanation
Indices: 363731--363765 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
363721 CTTTAATAAA
363731 ATTAGTAAGATGATT
1 ATTAGTAAGATGATT
363746 ATTAGATAAGTATGATT
1 ATTAG-TAAG-ATGATT
363763 ATT
1 ATT
363766 CTTGTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 4 0.22
17 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (15 bp):
ATTAGTAAGATGATT
Found at i:380008 original size:31 final size:31
Alignment explanation
Indices: 379973--380032 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
379963 TCAATGGTCA
**
379973 GTCAACATCAATCAATGGTGGTCAACAATTG
1 GTCAACATCAATCAAAAGTGGTCAACAATTG
380004 GTCAACATCAATCAAAAGTGGTCAACAAT
1 GTCAACATCAATCAAAAGTGGTCAACAAT
380033 GACCAATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (31 bp):
GTCAACATCAATCAAAAGTGGTCAACAATTG
Found at i:383156 original size:18 final size:19
Alignment explanation
Indices: 383133--383171 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
383123 GATATAACTC
383133 AATATAAA-ATTTAATA-TA
1 AATATAAATA-TTAATAGTA
383151 AATATAAATATTAATAGTA
1 AATATAAATATTAATAGTA
383170 AA
1 AA
383172 ATGTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
AATATAAATATTAATAGTA
Found at i:384191 original size:11 final size:11
Alignment explanation
Indices: 384152--384184 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
384142 TCTCTTTAAA
384152 TTTTTTTTTCT
1 TTTTTTTTTCT
384163 TTTTTTTTTCT
1 TTTTTTTTTCT
384174 TTTTTTTTTCT
1 TTTTTTTTTCT
384185 CTCTTTTCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:384197 original size:22 final size:22
Alignment explanation
Indices: 384152--384197 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
384142 TCTCTTTAAA
* * **
384152 TTTTTTTTTCTTTTTTTTTTCT
1 TTTTTTTTTCTCTCTTTTCGCT
384174 TTTTTTTTTCTCTCTTTTCGCT
1 TTTTTTTTTCTCTCTTTTCGCT
384196 TT
1 TT
384198 CTTCTTCTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTCTCTCTTTTCGCT
Found at i:384696 original size:20 final size:18
Alignment explanation
Indices: 384659--384697 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
384649 AGAAATTCCT
*
384659 AACTTTTAGATTTTTTAA
1 AACTTTTAGATATTTTAA
384677 AACTTTTATTGATATTTTAA
1 AACTTTTA--GATATTTTAA
384697 A
1 A
384698 TTTTGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
AACTTTTAGATATTTTAA
Found at i:387589 original size:48 final size:48
Alignment explanation
Indices: 387533--387628 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
387523 AGGAGAACAG
*
387533 AATATCATGGAGAAAGAACAAGTAAATCCACCTAAGTGAGTCTGAGAC
1 AATATCATGGAGAAAGAACAAATAAATCCACCTAAGTGAGTCTGAGAC
387581 AATATCATGGAGAAAGAACAAATAAATCCACCTAAGTGAGTCTGAGAC
1 AATATCATGGAGAAAGAACAAATAAATCCACCTAAGTGAGTCTGAGAC
387629 TCTGAGTTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.19
Consensus pattern (48 bp):
AATATCATGGAGAAAGAACAAATAAATCCACCTAAGTGAGTCTGAGAC
Found at i:387694 original size:15 final size:15
Alignment explanation
Indices: 387650--387699 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
387640 CTTAAGGGGA
387650 GCTCGCAACATTCAT
1 GCTCGCAACATTCAT
* *
387665 GTTCGC-ACTAGTCAT
1 GCTCGCAAC-ATTCAT
387680 GCTCGCAACATTCAT
1 GCTCGCAACATTCAT
387695 GCTCG
1 GCTCG
387700 TAGAGGAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.07
15 25 0.86
16 2 0.07
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (15 bp):
GCTCGCAACATTCAT
Found at i:387893 original size:81 final size:80
Alignment explanation
Indices: 387748--387905 Score: 235
Period size: 81 Copynumber: 2.0 Consensus size: 80
387738 GGGGGGGGTG
* * * *
387748 AAGTTAAATTGTAATTCTTATGATAGTTAAATGCAATTTTTGAAGAATTAAATCAAAATTTTATC
1 AAGTTAAATTGTAATTCTTATGATAGTGAAATGCAATTTTTAAAGAATTAAATAAAAAATTTATC
387813 ATTTTTAGGGGGTCA
66 ATTTTTAGGGGGTCA
* * * *
387828 AAGTTAAATTGTAATTTTTATTATAGTAGAAATGCAATTTTTAAAGGATTAAGTAAAAAATTTAT
1 AAGTTAAATTGTAATTCTTATGATAGT-GAAATGCAATTTTTAAAGAATTAAATAAAAAATTTAT
387893 CATTTTTAGGGGG
65 CATTTTTAGGGGG
387906 ACCAAGTGCA
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
80 25 0.36
81 44 0.64
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (80 bp):
AAGTTAAATTGTAATTCTTATGATAGTGAAATGCAATTTTTAAAGAATTAAATAAAAAATTTATC
ATTTTTAGGGGGTCA
Found at i:389813 original size:57 final size:57
Alignment explanation
Indices: 389730--389858 Score: 195
Period size: 57 Copynumber: 2.3 Consensus size: 57
389720 CCACCTAGGT
* * * * *
389730 TGAGTTCGCAATTTTCACACCTAACACCTAACACTTTGATGAGTTCGCGTCATTGAG
1 TGAGCTCGCAACTTTCACACCTAACACCTAACACTCTGATGAGCTCACGTCATTGAG
*
389787 TGAGCTCGCAACTTTCACACCTAACACCTAACACTCTGATGAGCTCATGTCATTGAG
1 TGAGCTCGCAACTTTCACACCTAACACCTAACACTCTGATGAGCTCACGTCATTGAG
*
389844 TGAGCACGCAACTTT
1 TGAGCTCGCAACTTT
389859 GAATGAGCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (57 bp):
TGAGCTCGCAACTTTCACACCTAACACCTAACACTCTGATGAGCTCACGTCATTGAG
Found at i:390542 original size:214 final size:214
Alignment explanation
Indices: 390173--390594 Score: 772
Period size: 214 Copynumber: 2.0 Consensus size: 214
390163 GGTGAAAGCT
* *
390173 GTATTTAAATTTTTAATATATGAACGACTTCCTTTTCAATTAGCAAGCTCTCTATGGTTGTTTAA
1 GTATTTAAATTTTTAATATATGAACGACTTCCTTTTCAATTAGCAAGCTCTCCATGGTTGTATAA
*
390238 CTTCATTCAAGTGTAGGTCAATATTTTAGACTACACTAAACTTGAACAAATATAAAGTGTATAAA
66 CTTCATTCAACTGTAGGTCAATATTTTAGACTACACTAAACTTGAACAAATATAAAGTGTATAAA
*
390303 TATTACCCAGTCGGCTTTAAGTGGTGGATTAAAATTCAAAGAAACTAAAAGTAAGGTTTGATTTA
131 TATTACCCAGTCGACTTTAAGTGGTGGATTAAAATTCAAAGAAACTAAAAGTAAGGTTTGATTTA
390368 CCAGAAGAAAATATTGAAA
196 CCAGAAGAAAATATTGAAA
390387 GTATTTAAATTTTTAATATATGAACGACTTCCTTTTCAATTAGCAAGCTCTCCATGGTTGTATAA
1 GTATTTAAATTTTTAATATATGAACGACTTCCTTTTCAATTAGCAAGCTCTCCATGGTTGTATAA
* * *
390452 CTTCATTCAACTGTAGGTCAATATTTTAGACTACACTGAACTTGAATAAATATACAGTGTATAAA
66 CTTCATTCAACTGTAGGTCAATATTTTAGACTACACTAAACTTGAACAAATATAAAGTGTATAAA
390517 TATTACCCAGTCGACTTTAAGTGGTGGATTAAAATTCAAAGAAACTAAAAGTAAGGTTTGATTTA
131 TATTACCCAGTCGACTTTAAGTGGTGGATTAAAATTCAAAGAAACTAAAAGTAAGGTTTGATTTA
*
390582 CCGGAAGAAAATA
196 CCAGAAGAAAATA
390595 AAAAAAGAAA
Statistics
Matches: 200, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 200 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (214 bp):
GTATTTAAATTTTTAATATATGAACGACTTCCTTTTCAATTAGCAAGCTCTCCATGGTTGTATAA
CTTCATTCAACTGTAGGTCAATATTTTAGACTACACTAAACTTGAACAAATATAAAGTGTATAAA
TATTACCCAGTCGACTTTAAGTGGTGGATTAAAATTCAAAGAAACTAAAAGTAAGGTTTGATTTA
CCAGAAGAAAATATTGAAA
Found at i:391319 original size:131 final size:130
Alignment explanation
Indices: 391070--391348 Score: 436
Period size: 131 Copynumber: 2.1 Consensus size: 130
391060 TAATTAAGTT
*
391070 CTTAAAACAAAA-AATAATAATTGCATGGGCAAAGGTGTAGTGCATACCTCATTCTGCTGTCGCC
1 CTTAAAACAAAATAA-AATAATTGCATGGGCAAACGTGTAGTGCATACCTCATTCTGCTGTCGCC
* *
391134 CCTGTTGATGGCATAAAATAAAAAAGTCAGACATATTTTCTAATATTTATTAACTTATCATCCAC
65 CCTGCTGATGGCATAAAACAAAAAAGTCAGACATATTTTCTAATATTTATTAACTTATCATCCAC
391199 A
130 A
*
391200 CTTAAAACAACAATAAAATAATTGCATGGGCAAACGTGTAGTGCATACCTTATTCTGCTGTCGCC
1 CTTAAAACAA-AATAAAATAATTGCATGGGCAAACGTGTAGTGCATACCTCATTCTGCTGTCGCC
* * * *
391265 CCTGCTGGTGGCATAAAACAACAAAGTCA-ACCATATTTTTTAATATTTATTAACTTGTCATCCA
65 CCTGCTGATGGCATAAAACAAAAAAGTCAGA-CATATTTTCTAATATTTATTAACTTATCATCCA
391329 CA
129 CA
391331 CTTAAAACAATAATAAAA
1 CTTAAAACAA-AATAAAA
391349 ATGTATCTAT
Statistics
Matches: 137, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
130 11 0.08
131 124 0.91
132 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (130 bp):
CTTAAAACAAAATAAAATAATTGCATGGGCAAACGTGTAGTGCATACCTCATTCTGCTGTCGCCC
CTGCTGATGGCATAAAACAAAAAAGTCAGACATATTTTCTAATATTTATTAACTTATCATCCACA
Found at i:394031 original size:292 final size:292
Alignment explanation
Indices: 393507--394294 Score: 1522
Period size: 292 Copynumber: 2.7 Consensus size: 292
393497 GTGAAATATA
* * *
393507 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTAAGTTTACCTTAAGGGGAGCTATGCCTAAA
1 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
* *
393572 TTGGCTAGAAGCAAAAGCTCAAAGCAACCAAAGATCAGTAGCTCTTTTTTAAAGACATACGCAGG
66 TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
393637 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
131 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
393702 CATTAATCAAAAGTTTAATATTGTAATTTTTTTACTTTTTCCACAACAATCATAATACAATCACA
196 CATTAATCAAAAGTTTAATATTGTAATTTTTTTACTTTTTCCACAACAATCATAATACAATCACA
393767 AGTTCACAACATGAGGAGAACAAAATATCATG
261 AGTTCACAACATGAGGAGAACAAAATATCATG
393799 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
1 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
393864 TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
66 TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
393929 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
131 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
393994 CATTAATCAAAAGTTTAATATTGTAATTTTTTTACTTTTTCCACAACAATCATAATACAATCACA
196 CATTAATCAAAAGTTTAATATTGTAATTTTTTTACTTTTTCCACAACAATCATAATACAATCACA
394059 AGTTCACAACATGAGGAGAACAAAATATCATG
261 AGTTCACAACATGAGGAGAACAAAATATCATG
394091 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
1 GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
394156 TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
66 TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
394221 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
131 AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
*
394286 CATTCATCA
196 CATTAATCA
394295 TTCAATTACA
Statistics
Matches: 490, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
292 490 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (292 bp):
GAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCTATACCTGAA
TTGGCTAGCAGCAAAAGCTCAAAGCAACCAAAGATCAGTGGCTCTTTTTTAAAGACATACGCAGG
AAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAAAGTGGTATCATCCAACATCATTCAA
CATTAATCAAAAGTTTAATATTGTAATTTTTTTACTTTTTCCACAACAATCATAATACAATCACA
AGTTCACAACATGAGGAGAACAAAATATCATG
Found at i:395089 original size:30 final size:30
Alignment explanation
Indices: 395049--395136 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
395039 TCGCAGATGG
* *
395049 AGGGATAGTAGGAGGAGTATCCTCAGGTGA
1 AGGGATAGTAGGAGCAGTATCCTCAAGTGA
* *
395079 AGGGACAGTAGGAGCAGTATCCTCAAGTGG
1 AGGGATAGTAGGAGCAGTATCCTCAAGTGA
*
395109 AGGGATAGTAGGAGCAGTATCTTCAAGT
1 AGGGATAGTAGGAGCAGTATCCTCAAGT
395137 TCTTGAAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.31, C:0.12, G:0.36, T:0.20
Consensus pattern (30 bp):
AGGGATAGTAGGAGCAGTATCCTCAAGTGA
Found at i:398739 original size:18 final size:18
Alignment explanation
Indices: 398716--398806 Score: 85
Period size: 18 Copynumber: 5.1 Consensus size: 18
398706 ATTTTCGTAA
*
398716 ATTCAAAGCTGGGAGCTC
1 ATTCAAAGCTGCGAGCTC
*
398734 ATTCAAAGTTGCGAGCTC
1 ATTCAAAGCTGCGAGCTC
* *
398752 A-CCTAAAGCAGCGAGCTC
1 ATTC-AAAGCTGCGAGCTC
* *
398770 ATTCAAAGTTACGAGCTC
1 ATTCAAAGCTGCGAGCTC
* * *
398788 ACTCAAGGATGCGAGCTC
1 ATTCAAAGCTGCGAGCTC
398806 A
1 A
398807 CCTCAAAAGT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
17 1 0.02
18 56 0.97
19 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (18 bp):
ATTCAAAGCTGCGAGCTC
Found at i:398768 original size:36 final size:36
Alignment explanation
Indices: 398720--398806 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 36
398710 TCGTAAATTC
* *
398720 AAAGC-TGGGAGCTCATTCAAAGTTGCGAGCTCACCT
1 AAAGCATGCGAGCTCATTCAAAGTTACGAGCTCA-CT
398756 AAAGCA-GCGAGCTCATTCAAAGTTACGAGCTCACT
1 AAAGCATGCGAGCTCATTCAAAGTTACGAGCTCACT
* *
398791 CAAGGATGCGAGCTCA
1 AAAGCATGCGAGCTCA
398807 CCTCAAAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
35 6 0.13
36 39 0.87
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (36 bp):
AAAGCATGCGAGCTCATTCAAAGTTACGAGCTCACT
Found at i:399330 original size:290 final size:291
Alignment explanation
Indices: 398809--399392 Score: 1037
Period size: 290 Copynumber: 2.0 Consensus size: 291
398799 CGAGCTCACC
*
398809 TCAAAAGTTTAATATTGTAATTTTTTATTGTTTCCACAACAATCATAATACAATCACAAGTTCAG
1 TCAAAAGTTTAATATTGTAATTTTTTATTGTTTCCACAACAATCATAATACAATCACAAGTTCAC
*
398874 AACACGAGGAGAACAGAATATCATGGAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTT
66 AACACAAGGAGAACAGAATATCATGGAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTT
* *
398939 TACCTTAAGGGATGTTATACCTGAATTGGCTAAAAGCAAAAGCTCAAAGCAACCAAAGATCAGTG
131 TACCTTAAGGGATGCTATACCTGAATTGGCTAAAAGCAAAAGCTCAAAGAAACCAAAGATCAGTG
*
399004 GCTCTTTTTTAAAGACATGCGCAGGAAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAA
196 GCTCTTTTTTAAAGACATACGCAGGAAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAA
399069 AGTGGTACCATCCAACATCATTCAACATTCA
261 AGTGGTACCATCCAACATCATTCAACATTCA
* * *
399100 TCAAAAGTTTAATTTTTTAATTTTTTATTGTTTCCACAACAATCATAAT-CAATCACAAGTTTAC
1 TCAAAAGTTTAATATTGTAATTTTTTATTGTTTCCACAACAATCATAATACAATCACAAGTTCAC
*
399164 AACACAAGGAGAACAGAATATCATGGAGAAAGAACAATTAAATCCATCTCAAGTGAGTCTGAGTT
66 AACACAAGGAGAACAGAATATCATGGAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTT
*
399229 TACCTTAAGGGGA-GCTATACCTGAATTGGCTATAAGCAAAAGCTCAAAGAAACCAAAGATCAGT
131 TACCTTAA-GGGATGCTATACCTGAATTGGCTAAAAGCAAAAGCTCAAAGAAACCAAAGATCAGT
399293 GGCTCTTTTTTAAAGACATACGCAGGAAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGA
195 GGCTCTTTTTTAAAGACATACGCAGGAAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGA
* *
399358 AAGTGGTATCATCCAGCATCATTCAACATTCA
260 AAGTGGTACCATCCAACATCATTCAACATTCA
399390 TCA
1 TCA
399393 TTCAGTTACA
Statistics
Matches: 280, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
290 229 0.82
291 51 0.18
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (291 bp):
TCAAAAGTTTAATATTGTAATTTTTTATTGTTTCCACAACAATCATAATACAATCACAAGTTCAC
AACACAAGGAGAACAGAATATCATGGAGAAAGAACAAGTAAATCCATCTCAAGTGAGTCTGAGTT
TACCTTAAGGGATGCTATACCTGAATTGGCTAAAAGCAAAAGCTCAAAGAAACCAAAGATCAGTG
GCTCTTTTTTAAAGACATACGCAGGAAGATAGGTGAAAGTGGTATCTAAATTTTTAATAAATGAA
AGTGGTACCATCCAACATCATTCAACATTCA
Found at i:399476 original size:41 final size:43
Alignment explanation
Indices: 399430--399528 Score: 166
Period size: 43 Copynumber: 2.3 Consensus size: 43
399420 CTTCATCATT
* *
399430 CAACATCATCGTTCAGCAGCAAC-AA-AAAAAAAATTAAGGCA
1 CAACATTATCGTTCAACAGCAACAAATAAAAAAAATTAAGGCA
399471 CAACATTATCGTTCAACAGCAACAAATAAAAAAAATTAAGGCA
1 CAACATTATCGTTCAACAGCAACAAATAAAAAAAATTAAGGCA
399514 CAACATTATCGTTCA
1 CAACATTATCGTTCA
399529 CAATATCATC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 21 0.39
42 2 0.04
43 31 0.57
ACGTcount: A:0.49, C:0.21, G:0.10, T:0.19
Consensus pattern (43 bp):
CAACATTATCGTTCAACAGCAACAAATAAAAAAAATTAAGGCA
Found at i:399897 original size:33 final size:33
Alignment explanation
Indices: 399860--399930 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
399850 CTTTATCTTT
* * *
399860 CTTCTATAACTCGGCTTCTTGTTCTTTTTCGGC
1 CTTCTACAACTCAGCTTCATGTTCTTTTTCGGC
* ** *
399893 CTTCTCCATTTCAGCTTCATGTTCTTTTTTGGC
1 CTTCTACAACTCAGCTTCATGTTCTTTTTCGGC
399926 CTTCT
1 CTTCT
399931 CCATTTCAGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.08, C:0.28, G:0.13, T:0.51
Consensus pattern (33 bp):
CTTCTACAACTCAGCTTCATGTTCTTTTTCGGC
Found at i:399931 original size:33 final size:33
Alignment explanation
Indices: 399873--399940 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
399863 CTATAACTCG
*
399873 GCTTCTTGTTCTTTTTCGGCCTTCTCCATTTCA
1 GCTTCATGTTCTTTTTCGGCCTTCTCCATTTCA
*
399906 GCTTCATGTTCTTTTTTGGCCTTCTCCATTTCA
1 GCTTCATGTTCTTTTTCGGCCTTCTCCATTTCA
399939 GC
1 GC
399941 CTGATACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.07, C:0.29, G:0.13, T:0.50
Consensus pattern (33 bp):
GCTTCATGTTCTTTTTCGGCCTTCTCCATTTCA
Found at i:403611 original size:30 final size:28
Alignment explanation
Indices: 403546--403621 Score: 134
Period size: 28 Copynumber: 2.6 Consensus size: 28
403536 AGACCTATTC
403546 ATGTGTTCATGTTCGTTTATTTCAAATT
1 ATGTGTTCATGTTCGTTTATTTCAAATT
403574 ATGTGTTCATGTTCGTTTATTTCAAATT
1 ATGTGTTCATGTTCGTTTATTTCAAATT
403602 ATGTGTGTTCATGTTCGTTT
1 A--TGTGTTCATGTTCGTTT
403622 GTTTAATGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 29 0.63
30 17 0.37
ACGTcount: A:0.18, C:0.11, G:0.17, T:0.54
Consensus pattern (28 bp):
ATGTGTTCATGTTCGTTTATTTCAAATT
Found at i:406064 original size:27 final size:25
Alignment explanation
Indices: 406021--406146 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 25
406011 ATTTTGGTTT
*
406021 TTTTTTTTTAATTTTTAAGGGGTCCAA
1 TTTTTTTTTAACTTTTAA-GGGT-CAA
*
406048 TTTTTTTTTAACCTTTACA-GGTCAA
1 TTTTTTTTTAACTTTTA-AGGGTCAA
*
406073 TTTTTTTTATCAACTTTTAAGGGCCCTTAA
1 TTTTTTTT-T-AACTTTTAAGGG---TCAA
*
406103 TTTTTTTTTTAGCTTTTAAGGGCTCAA
1 -TTTTTTTTTAACTTTTAAGGG-TCAA
**
406130 TTTTTTACTAACTTTTA
1 TTTTTTTTTAACTTTTA
406147 GGAGACCTAA
Statistics
Matches: 82, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
25 11 0.13
26 19 0.23
27 28 0.34
28 1 0.01
29 11 0.13
30 4 0.05
31 8 0.10
ACGTcount: A:0.22, C:0.13, G:0.10, T:0.55
Consensus pattern (25 bp):
TTTTTTTTTAACTTTTAAGGGTCAA
Found at i:411440 original size:31 final size:30
Alignment explanation
Indices: 411399--411564 Score: 125
Period size: 31 Copynumber: 5.6 Consensus size: 30
411389 TTAATATAAC
411399 ATTTGGTACCTGAACTTGACACTTTTTTCTA
1 ATTTGGTACCTGAACTTG-CACTTTTTTCTA
*
411430 ATTTGATACCTGAACTT----TTTTTTACCTA
1 ATTTGGTACCTGAACTTGCACTTTTTT--CTA
*
411458 ATTTGGTACGTGAACTTGACAC-TTTTTCTTA
1 ATTTGGTACCTGAACTTG-CACTTTTTTC-TA
** * * *
411489 ATTTAATACCTAAACTT----TTTTTGACCCA
1 ATTTGGTACCTGAACTTGCACTTTTT--TCTA
411517 ATTTGGTACCTGAACTTGGCACTTTTTTCTA
1 ATTTGGTACCTGAACTT-GCACTTTTTTCTA
*
411548 ATTTGGTACCTAAACTT
1 ATTTGGTACCTGAACTT
411565 TTTTTGGACC
Statistics
Matches: 104, Mismatches: 15, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
26 6 0.06
27 4 0.04
28 33 0.32
29 1 0.01
30 1 0.01
31 49 0.47
32 5 0.05
33 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (30 bp):
ATTTGGTACCTGAACTTGCACTTTTTTCTA
Found at i:411461 original size:28 final size:28
Alignment explanation
Indices: 411427--411533 Score: 90
Period size: 28 Copynumber: 3.7 Consensus size: 28
411417 ACACTTTTTT
411427 CTAATTTGATACCTGAACTTTTTTTTAC
1 CTAATTTGATACCTGAACTTTTTTTTAC
* * *
411455 CTAATTTGGTACGTGAACTTGACACTTTTT-C
1 CTAATTTGATACCTGAACTT----TTTTTTAC
* * * *
411486 TTAATTTAATACCTAAACTTTTTTTGAC
1 CTAATTTGATACCTGAACTTTTTTTTAC
* *
411514 CCAATTTGGTACCTGAACTT
1 CTAATTTGATACCTGAACTT
411534 GGCACTTTTT
Statistics
Matches: 59, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
27 4 0.07
28 34 0.58
31 16 0.27
32 5 0.08
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (28 bp):
CTAATTTGATACCTGAACTTTTTTTTAC
Found at i:411491 original size:59 final size:59
Alignment explanation
Indices: 411399--411647 Score: 313
Period size: 59 Copynumber: 4.2 Consensus size: 59
411389 TTAATATAAC
* * *
411399 ATTTGGTACCTGAACTTGACACTTTTTTCTAATTTGATACCTGAACTTTTTTTTACCTA
1 ATTTGGTACCTGAACTTGACACTTTTTTCTAATTTGATACCTAAACTTTTTTTGACCCA
* *
411458 ATTTGGTACGTGAACTTGACAC-TTTTTCTTAATTTAATACCTAAACTTTTTTTGACCCA
1 ATTTGGTACCTGAACTTGACACTTTTTTC-TAATTTGATACCTAAACTTTTTTTGACCCA
* *
411517 ATTTGGTACCTGAACTTGGCACTTTTTTCTAATTTGGTACCTAAACTTTTTTTGGACCCA
1 ATTTGGTACCTGAACTTGACACTTTTTTCTAATTTGATACCTAAACTTTTTTT-GACCCA
* * * ** * **
411577 TTTTGGTACTTGAACTTGACA-TTTTTTCCTAATTTGGTGTCTAAGCTTTTTTTAGATTCA
1 ATTTGGTACCTGAACTTGACACTTTTTT-CTAATTTGATACCTAAACTTTTTTT-GACCCA
411637 ATTTGGTACCT
1 ATTTGGTACCT
411648 AAATTTATTA
Statistics
Matches: 166, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
58 6 0.04
59 95 0.57
60 65 0.39
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.47
Consensus pattern (59 bp):
ATTTGGTACCTGAACTTGACACTTTTTTCTAATTTGATACCTAAACTTTTTTTGACCCA
Found at i:411882 original size:29 final size:30
Alignment explanation
Indices: 411849--411925 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
411839 GGACCCCAAA
* *
411849 AAGTTTAAGTGCCAACTTAA-AAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAGTGTC
* *
411878 AAGTTTAAGTACTAAATTAAGAAAAGTGGC
1 AAGTTTAAGTACCAAATTAAGAAAAGTGTC
* * *
411908 GAGTTTGAGAACCAAATT
1 AAGTTTAAGTACCAAATT
411926 GGACCAAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 17 0.44
30 22 0.56
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.27
Consensus pattern (30 bp):
AAGTTTAAGTACCAAATTAAGAAAAGTGTC
Found at i:418518 original size:55 final size:55
Alignment explanation
Indices: 418431--418548 Score: 182
Period size: 55 Copynumber: 2.1 Consensus size: 55
418421 ACGTGCCACG
*
418431 TAACAATCGATTTAAACATATAAACAAACGATTCAAAAGAAGTAGTATTCCAGCA
1 TAACAATCGATTTAAACATATAAACAAACGATTCAAAAGAAGTAGTATTCCAACA
* * * *
418486 TAACAATCGGTTTAAACATATAAACAATCGATTTAAAAGTAGTAGTATTCCAACA
1 TAACAATCGATTTAAACATATAAACAAACGATTCAAAAGAAGTAGTATTCCAACA
*
418541 TATCAATC
1 TAACAATC
418549 TATTCAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (55 bp):
TAACAATCGATTTAAACATATAAACAAACGATTCAAAAGAAGTAGTATTCCAACA
Found at i:418658 original size:55 final size:54
Alignment explanation
Indices: 418570--418844 Score: 263
Period size: 55 Copynumber: 5.1 Consensus size: 54
418560 AAAAAAGCAA
*
418570 TATTCCACCATAATAATCGA-TTAAACATATAAACAATCGATTCAAAAGAAACAG
1 TATTCCAACATAA-AATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
* * * *
418624 AATTCCAACATGAAAATCGATTTAAACATATAAACAATTGATTTAAAAG---TAG
1 TATTCCAACAT-AAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
** *
418676 TATTCCAACATAAAAATCGATTTAAACATATAAACAATTTATTCAAAAGAATCAG
1 TATTCCAACAT-AAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
* * * * * **
418731 TATTCCACCATAACAATCAATTTAAATACATAAACAATCGATT-AAAAAAAAGTTG
1 TATTCCAACATAA-AATCGATTTAAACATATAAACAATCGATTCAAAAGAAA-CAG
* * * * * * *
418786 TATTCCAACATGACAATTGATTTAAATATAAAAACAATCGATCCAAACGAAACAA
1 TATTCCAACAT-AAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
418841 TATT
1 TATT
418845 TTTGGGAAAT
Statistics
Matches: 180, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
52 47 0.26
54 23 0.13
55 103 0.57
56 7 0.04
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (54 bp):
TATTCCAACATAAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
Found at i:418723 original size:107 final size:108
Alignment explanation
Indices: 418560--418839 Score: 314
Period size: 107 Copynumber: 2.6 Consensus size: 108
418550 ATTCAAAAAA
* * * *
418560 AAAAAAGCAATATTCCACCATAATAATCGA-TTAAACATATAAACAATCGATTCAAAAGAAACAG
1 AAAAAAGTAGTATTCCAACATAAAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
* * *
418624 AATTCCAACATGAA-AATCGATTTAAACATATAAACAATTGATT
66 AATTCCAACAT-AACAATCAATTTAAACACATAAACAATCGATT
* ** *
418667 -TAAAAGTAGTATTCCAACATAAAAATCGATTTAAACATATAAACAATTTATTCAAAAGAATCAG
1 AAAAAAGTAGTATTCCAACATAAAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
* * *
418731 TATTCCACCATAACAATCAATTTAAATACATAAACAATCGATT
66 AATTCCAACATAACAATCAATTTAAACACATAAACAATCGATT
* * * * * * * *
418774 AAAAAAAAGTTGTATTCCAACATGACAATTGATTTAAATATAAAAACAATCGATCCAAACGAAAC
1 --AAAAAAGTAGTATTCCAACATAAAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAAC
418839 A
64 A
418840 ATATTTTTGG
Statistics
Matches: 142, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
106 26 0.18
107 65 0.46
110 51 0.36
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.26
Consensus pattern (108 bp):
AAAAAAGTAGTATTCCAACATAAAAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAG
AATTCCAACATAACAATCAATTTAAACACATAAACAATCGATT
Found at i:419901 original size:26 final size:26
Alignment explanation
Indices: 419843--419912 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
419833 TCGAGCCTCC
*
419843 CAGTAAATTTAGCTCATATGAGCTTAGT
1 CAGTAAA-TT-GCTCTTATGAGCTTAGT
*
419871 TAGTAAATTGCTCTTATGAGC-TAGT
1 CAGTAAATTGCTCTTATGAGCTTAGT
* *
419896 ACAGTATACTGCTCTTA
1 -CAGTAAATTGCTCTTA
419913 CAAGCCAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.11
26 24 0.67
27 2 0.06
28 6 0.17
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (26 bp):
CAGTAAATTGCTCTTATGAGCTTAGT
Found at i:421317 original size:52 final size:51
Alignment explanation
Indices: 421190--421435 Score: 269
Period size: 52 Copynumber: 4.8 Consensus size: 51
421180 CCGTAAATGA
* * *
421190 AAAGGTCCAATGACTAAGTGTCATCGTGAGTAAATGAATTCCTTT-CAGATA
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAA-TCCTTTACAGATT
* * *
421241 AAAGATCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACAGATT
** * * *
421292 ACAAGGTCCGATGACTAAAAGTCATCGTGAGTATATGGATCCTTTACGGATC
1 A-AAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACAGATT
** * * * *
421344 AAGAGGTCCGATGACTCTGTGTCATCGTGAGTATACGAATCCCTTGCGGATT
1 AA-AGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACAGATT
* * *
421396 ATAAGGTCCGATGGCTATGTGTCATCATGAGTATATGAAT
1 A-AAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAAT
421436 GAAGTGAAAT
Statistics
Matches: 166, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
50 6 0.04
51 42 0.25
52 117 0.70
53 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACAGATT
Found at i:424856 original size:11 final size:12
Alignment explanation
Indices: 424829--424856 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
424819 TTTTTTTTAA
424829 AAAAAATAAAAG
1 AAAAAATAAAAG
424841 AAAAAATAAAAG
1 AAAAAATAAAAG
424853 AAAA
1 AAAA
424857 TTTTTGTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAAAATAAAAG
Found at i:432454 original size:3 final size:3
Alignment explanation
Indices: 432446--432478 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
432436 TATAAAAGTT
432446 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
432479 ATGTAGTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:436204 original size:16 final size:16
Alignment explanation
Indices: 436174--436203 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
436164 ATTGTAACAC
436174 AAAAAATTATAAAAAT
1 AAAAAATTATAAAAAT
436190 AAAAAATT-TAAAAA
1 AAAAAATTATAAAAA
436204 AATGTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAATTATAAAAAT
Found at i:436228 original size:2 final size:2
Alignment explanation
Indices: 436221--436245 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
436211 TGAATGGAGA
436221 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
436246 ATTCAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:439913 original size:31 final size:28
Alignment explanation
Indices: 439878--439951 Score: 76
Period size: 31 Copynumber: 2.5 Consensus size: 28
439868 AACTGAATCA
439878 AAATCAAAATTTTATGTACACATTTGAACC
1 AAATCAAAATTTTATGTA-A-ATTTGAACC
* * *
439908 GAAATCAATATTTAATATGTAAATTTGTATC
1 -AAATCAAAATTT--TATGTAAATTTGAACC
439939 AAATCAAAATTTT
1 AAATCAAAATTTT
439952 GTATTAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
28 1 0.03
30 11 0.30
31 18 0.49
32 1 0.03
33 6 0.16
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.38
Consensus pattern (28 bp):
AAATCAAAATTTTATGTAAATTTGAACC
Found at i:442498 original size:30 final size:29
Alignment explanation
Indices: 442462--442629 Score: 135
Period size: 30 Copynumber: 5.7 Consensus size: 29
442452 TAAATTTTTT
442462 AAAATTATGTTTTGACCCCTAAACTTTCCA
1 AAAATTA-GTTTTGACCCCTAAACTTTCCA
* *
442492 AAAATTAAGTTTTGACTCCTTAACTTTCCA
1 AAAATT-AGTTTTGACCCCTAAACTTTCCA
**
442522 AAAATTCAAATTTGA-CCCTCAAACTTTCCA
1 AAAATT-AGTTTTGACCCCT-AAACTTTCCA
* * *
442552 AAATTTAGATTTG-GCCCTCAAACTTTCCAA
1 AAAATTAGTTTTGACCCCT-AAACTTTCC-A
* * * *
442582 AAAATTGAATTTGGTCACC-AAACTTTCCA
1 AAAATT-AGTTTTGACCCCTAAACTTTCCA
* *
442611 AAATTTTGTTTTGACCCCT
1 AAAATTAGTTTTGACCCCT
442630 TTTTCCTTAT
Statistics
Matches: 110, Mismatches: 21, Indels: 15
0.75 0.14 0.10
Matches are distributed among these distances:
28 7 0.06
29 29 0.26
30 67 0.61
31 5 0.05
32 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.36
Consensus pattern (29 bp):
AAAATTAGTTTTGACCCCTAAACTTTCCA
Found at i:442584 original size:59 final size:58
Alignment explanation
Indices: 442472--442625 Score: 159
Period size: 59 Copynumber: 2.6 Consensus size: 58
442462 AAAATTATGT
* * *
442472 TTTGACCCCTAAACTTTCCAAAAATTAAGTTTTGACTCCTTAACTTTCC-AAAAATTCAAA
1 TTTGACCCC-AAACTTTCC-AAAATTTAGATTTGACTCCTAAACTTTCCAAAAAATT-AAA
* *
442532 TTTGACCCTCAAACTTTCCAAAATTTAGATTTGGC-CCTCAAACTTTCCAAAAAATTGAA
1 TTTGACCC-CAAACTTTCCAAAATTTAGATTTGACTCCT-AAACTTTCCAAAAAATTAAA
* * * *
442591 TTTGGTCACCAAACTTTCCAAAATTTTGTTTTGAC
1 TTT-GACCCCAAACTTTCCAAAATTTAGATTTGAC
442626 CCCTTTTTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
58 3 0.04
59 49 0.61
60 27 0.34
61 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.36
Consensus pattern (58 bp):
TTTGACCCCAAACTTTCCAAAATTTAGATTTGACTCCTAAACTTTCCAAAAAATTAAA
Found at i:443681 original size:17 final size:17
Alignment explanation
Indices: 443655--443687 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
443645 TACAAATTTT
443655 ATTATGGTAAGTTTGGC
1 ATTATGGTAAGTTTGGC
*
443672 ATTATTGTAAGTTTGG
1 ATTATGGTAAGTTTGG
443688 GTTGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.27, T:0.45
Consensus pattern (17 bp):
ATTATGGTAAGTTTGGC
Found at i:443944 original size:22 final size:22
Alignment explanation
Indices: 443903--443945 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
443893 ACAAAACCCA
*
443903 ATTTTATTTATTTTGTATTTTT
1 ATTTTATTTATTTTGCATTTTT
443925 ATTTTATTTATTTAT-CATTTT
1 ATTTTATTTATTT-TGCATTTT
443946 ATAAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
ATTTTATTTATTTTGCATTTTT
Found at i:445217 original size:59 final size:60
Alignment explanation
Indices: 445147--445320 Score: 207
Period size: 59 Copynumber: 3.0 Consensus size: 60
445137 TTATGTTTGG
* * * * *
445147 ATCCCTT-AACTTTCCAAAAA-TCTAAGTTTTACCCTTGAATTTTCCAAAATTCAAATTTA
1 ATCCCTTAAACTTTCCAAAAATTC-AAATTTAACCCCTAAACTTTCCAAAATTCAAATTTA
*
445206 A-CCCTTAAACTTTCCAAAAATTCAAATTTAACCCCTAAACTTTCTAAAATTCAAATTTA
1 ATCCCTTAAACTTTCCAAAAATTCAAATTTAACCCCTAAACTTTCCAAAATTCAAATTTA
* *
445265 ATCCC-TAAAGC-TTCCAAAAATTCAAAATTGACCCCT-AACTTTCCAAAAATTCAAAT
1 ATCCCTTAAA-CTTTCCAAAAATTCAAATTTAACCCCTAAACTTTCC-AAAATTCAAAT
445321 GTGACCTGGT
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
58 12 0.12
59 83 0.82
60 6 0.06
ACGTcount: A:0.40, C:0.24, G:0.02, T:0.33
Consensus pattern (60 bp):
ATCCCTTAAACTTTCCAAAAATTCAAATTTAACCCCTAAACTTTCCAAAATTCAAATTTA
Found at i:445326 original size:29 final size:30
Alignment explanation
Indices: 445149--445320 Score: 192
Period size: 29 Copynumber: 5.8 Consensus size: 30
445139 ATGTTTGGAT
* * *
445149 CCCTTAACTTTCCAAAAA-TCTAAGTTTTAC
1 CCCTAAACTTTCCAAAAATTC-AAATTTAAC
* * *
445179 CCTTGAATTTTCC-AAAATTCAAATTTAAC
1 CCCTAAACTTTCCAAAAATTCAAATTTAAC
*
445208 CCTTAAACTTTCCAAAAATTCAAATTTAAC
1 CCCTAAACTTTCCAAAAATTCAAATTTAAC
* *
445238 CCCTAAACTTT-CTAAAATTCAAATTTAAT
1 CCCTAAACTTTCCAAAAATTCAAATTTAAC
* *
445267 CCCTAAAGC-TTCCAAAAATTCAAAATTGAC
1 CCCTAAA-CTTTCCAAAAATTCAAATTTAAC
445297 CCCT-AACTTTCCAAAAATTCAAAT
1 CCCTAAACTTTCCAAAAATTCAAAT
445321 GTGACCTGGT
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
28 1 0.01
29 64 0.52
30 57 0.47
ACGTcount: A:0.40, C:0.24, G:0.02, T:0.33
Consensus pattern (30 bp):
CCCTAAACTTTCCAAAAATTCAAATTTAAC
Found at i:454071 original size:302 final size:302
Alignment explanation
Indices: 453525--454131 Score: 1038
Period size: 302 Copynumber: 2.0 Consensus size: 302
453515 AGGACGAAAA
*
453525 ATTTTTTTAAGGGGGGAGAGTTGTAACACCCTAATTAATTTGAGAGATCTACTTAGAATTTTTTT
1 ATTTTTTTAAGGGGGGAGAGTTGTAACACCCTAATTAATTTGAGAGATCTACTTAGAATTTTATT
*
453590 TAGAAATTTGAGGGCCCTTTCGTAATTTTTGGTAAGTTAAAGACTTAATTGAGCATTAGATTAAA
66 TAGAAATTTAAGGGCCCTTTCGTAATTTTTGGTAAGTTAAAGACTTAATTGAGCATTAGATTAAA
*
453655 TTTTAAGGTCAATTTGGAATTTTGGGGATTTAATTGTAGTGTGTGTAAAAGTTCTGGGTCAACTA
131 ATTTAAGGTCAATTTGGAATTTTGGGGATTTAATTGTAGTGTGTGTAAAAGTTCTGGGTCAACTA
* * *
453720 GAAACCTTAGAGTTGTCCAGGGACCTCCGGGTAAATACTCTAATTTATTGGGTATAAAAATCACT
196 GAAACCCTAGAGTTATCCAGGGACCTCCAGGTAAATACTCTAATTTATTGGGTATAAAAATCACT
*
453785 TTTTCACCCTAAATGTCTCTTATTCTCCCTTTTTGTTTTGCT
261 TTTTCACCCTAAATGTCTCTTATTATCCCTTTTTGTTTTGCT
*
453827 ATTTTTTTAAGGGGGGA-AGGTTGTAACACCCTAATTAATTTGAGAGATTTACTTAGAATTTTAT
1 ATTTTTTTAAGGGGGGAGA-GTTGTAACACCCTAATTAATTTGAGAGATCTACTTAGAATTTTAT
* *
453891 TTAGAAGTTTAAGGGCCTTTTCGTAATTTTTGGTAAGTTAAAGACTTAATTGAGCATTAGATTAA
65 TTAGAAATTTAAGGGCCCTTTCGTAATTTTTGGTAAGTTAAAGACTTAATTGAGCATTAGATTAA
**
453956 AATTTAAGGTCAATTTGGAATTTTGGGGATTTAATTGTAGTGTGTGTGTAAGTT-TAGGGTCAAC
130 AATTTAAGGTCAATTTGGAATTTTGGGGATTTAATTGTAGTGTGTGTAAAAGTTCT-GGGTCAAC
* *
454020 TAGAAACCCTAGTGTTATCCAGGGACCTCCAGTTAAATACTCTAATTTATTGGGTATAAAAATCA
194 TAGAAACCCTAGAGTTATCCAGGGACCTCCAGGTAAATACTCTAATTTATTGGGTATAAAAATCA
* *
454085 CTTTTTCACCCTGAATGTCTCTTCTTATCCCTTTTTGTTTTGCT
259 CTTTTTCACCCTAAATGTCTCTTATTATCCCTTTTTGTTTTGCT
454129 ATT
1 ATT
454132 GTCGATTTTT
Statistics
Matches: 287, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
301 2 0.01
302 285 0.99
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (302 bp):
ATTTTTTTAAGGGGGGAGAGTTGTAACACCCTAATTAATTTGAGAGATCTACTTAGAATTTTATT
TAGAAATTTAAGGGCCCTTTCGTAATTTTTGGTAAGTTAAAGACTTAATTGAGCATTAGATTAAA
ATTTAAGGTCAATTTGGAATTTTGGGGATTTAATTGTAGTGTGTGTAAAAGTTCTGGGTCAACTA
GAAACCCTAGAGTTATCCAGGGACCTCCAGGTAAATACTCTAATTTATTGGGTATAAAAATCACT
TTTTCACCCTAAATGTCTCTTATTATCCCTTTTTGTTTTGCT
Found at i:465606 original size:40 final size:40
Alignment explanation
Indices: 465562--465774 Score: 164
Period size: 40 Copynumber: 5.3 Consensus size: 40
465552 TCGACCATGA
*
465562 GGCAAATTGAATATCATCCAATATTTTACCCTAATCAAAG
1 GGCAAATTGAAGATCATCCAATATTTTACCCTAATCAAAG
* * * *
465602 GGCAAATTGAAGATCATTCAATAGTTTACTCTAATCGGAA-
1 GGCAAATTGAAGATCATCCAATATTTTACCCTAATC-AAAG
* * * ** * *
465642 GG-AAGATTGAAGGATCATCCGATCTCTTACCCCGAGC-ATG
1 GGCAA-ATTGAA-GATCATCCAATATTTTACCCTAATCAAAG
* *
465682 AGGCAGATTGAAGACCATCCAATATTTTACCCTAATCAGAA-
1 -GGCAAATTGAAGATCATCCAATATTTTACCCTAATCA-AAG
* * * * * *
465723 GGCAAATTGAATACCATCCAATTTTTTATCCTAACCAGAG
1 GGCAAATTGAAGATCATCCAATATTTTACCCTAATCAAAG
*
465763 GGAAAATTGAAG
1 GGCAAATTGAAG
465775 GACCATCCGA
Statistics
Matches: 132, Mismatches: 32, Indels: 18
0.73 0.18 0.10
Matches are distributed among these distances:
39 4 0.03
40 100 0.76
41 26 0.20
42 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (40 bp):
GGCAAATTGAAGATCATCCAATATTTTACCCTAATCAAAG
Found at i:465772 original size:121 final size:121
Alignment explanation
Indices: 465536--465833 Score: 352
Period size: 121 Copynumber: 2.5 Consensus size: 121
465526 AAAGTCACCA
* * * * * *
465536 CATCCAATCTTTTACCTCGACCATGAGGCAAATTGAATATCATCCAATATTTTACCCTAATCAAA
1 CATCCGATCTCTTACCCCGACCATGAGGCAGATTGAAGACCATCCAATATTTTACCCTAATCAAA
* * * * * *
465601 GGGCAAATTGAAGATCATTCAATAGTTTACTCTAATCGGAAGGAAGATTGAAGGAT
66 GGGCAAATTGAAGACCATCCAATAGTTTACTCTAACCAGAAGGAAAATTGAAGGAC
*
465657 CATCCGATCTCTTACCCCGAGCATGAGGCAGATTGAAGACCATCCAATATTTTACCCTAATCAGA
1 CATCCGATCTCTTACCCCGACCATGAGGCAGATTGAAGACCATCCAATATTTTACCCTAATCA-A
* ** *
465722 A-GGCAAATTGAATACCATCCAATTTTTTA-TCCTAACCAGAGGGAAAATTGAAGGAC
65 AGGGCAAATTGAAGACCATCCAATAGTTTACT-CTAACCAGAAGGAAAATTGAAGGAC
* * * *
465778 CATCCGATC-CTTTACCCCGATCATGGGGCAGATTGAAG-CAATCCAATCTTTTACCC
1 CATCCGATCTC-TTACCCCGACCATGAGGCAGATTGAAGACCATCCAATATTTTACCC
465834 CTAAAGCTAT
Statistics
Matches: 153, Mismatches: 21, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
120 18 0.12
121 133 0.87
122 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (121 bp):
CATCCGATCTCTTACCCCGACCATGAGGCAGATTGAAGACCATCCAATATTTTACCCTAATCAAA
GGGCAAATTGAAGACCATCCAATAGTTTACTCTAACCAGAAGGAAAATTGAAGGAC
Found at i:465779 original size:81 final size:80
Alignment explanation
Indices: 465561--465782 Score: 223
Period size: 81 Copynumber: 2.8 Consensus size: 80
465551 CTCGACCATG
* * * *
465561 AGGCAAATTGAATATCATCCAATATTTTACCCTAATCAAAGGGCAAATTGAAGATCATTCAATAG
1 AGGCAAATTGAATATCATCCAATATTTTACCCTAACCAGAGGGCAAATTGAAGACCATCCAATAG
* *
465626 TTTACTCTAATCGGA
66 TTTACCCTAATCAGA
* * * * ** * *
465641 AGG-AAGATTGAAGGATCATCCGATCTCTTACCCCGAGCATGA-GGCAGATTGAAGACCATCCAA
1 AGGCAA-ATTGAA-TATCATCCAATATTTTACCCTAACCA-GAGGGCAAATTGAAGACCATCCAA
*
465704 TATTTTACCCTAATCAGA
63 TAGTTTACCCTAATCAGA
* * * *
465722 AGGCAAATTGAATACCATCCAATTTTTTATCCTAACCAGAGGGAAAATTGAAGGACCATCC
1 AGGCAAATTGAATATCATCCAATATTTTACCCTAACCAGAGGGCAAATTGAA-GACCATCC
465783 GATCCTTTAC
Statistics
Matches: 111, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
79 4 0.04
80 35 0.32
81 69 0.62
82 3 0.03
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (80 bp):
AGGCAAATTGAATATCATCCAATATTTTACCCTAACCAGAGGGCAAATTGAAGACCATCCAATAG
TTTACCCTAATCAGA
Found at i:466708 original size:21 final size:20
Alignment explanation
Indices: 466673--466713 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
466663 CCCAATTCTG
466673 TTTTAATTTTATTTATTTAT
1 TTTTAATTTTATTTATTTAT
*
466693 TTTTCATTTGTATTTATTTAT
1 TTTTAATTT-TATTTATTTAT
466714 AAGTAGATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTAATTTTATTTATTTAT
Found at i:467933 original size:60 final size:58
Alignment explanation
Indices: 467864--468003 Score: 142
Period size: 60 Copynumber: 2.3 Consensus size: 58
467854 ATGTTTTGAT
* * *
467864 CCCTTAACTTTCTAAAAATCT-AAGTTTTACCCTCGAA-CTTTTCAAAAATTCAAATTTAA
1 CCCTTAACTTTCTAAAAAT-TGAA-TTTGACCCCCGAACCTTCT-AAAAATTCAAATTTAA
* *
467923 CCCTTAAACTTTCCAAAAAATTGAATTTGACCCCCGAACCTTCTAAAAATTCAAATTTGA
1 CCCTT-AACTTT-CTAAAAATTGAATTTGACCCCCGAACCTTCTAAAAATTCAAATTTAA
*
467983 CTCTTGAACTTT-TCAAAAATT
1 CCCTT-AACTTTCT-AAAAATT
468004 CAAATGTGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
59 12 0.18
60 43 0.63
61 13 0.19
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (58 bp):
CCCTTAACTTTCTAAAAATTGAATTTGACCCCCGAACCTTCTAAAAATTCAAATTTAA
Found at i:468007 original size:30 final size:31
Alignment explanation
Indices: 467858--468013 Score: 119
Period size: 30 Copynumber: 5.2 Consensus size: 31
467848 GAAATTATGT
* *
467858 TTTGATCCCTT-AAC-TTTCTAAAAA-TCTAAG
1 TTTGA-CCCTTGAACTTTTCAAAAAATTC-AAA
* *
467888 TTTTACCCTCGAACTTTTC-AAAAATTCAAA
1 TTTGACCCTTGAACTTTTCAAAAAATTCAAA
* * * *
467918 TTTAACCCTTAAACTTTCCAAAAAATT-GAA
1 TTTGACCCTTGAACTTTTCAAAAAATTCAAA
** * *
467948 TTTGACCCCCGAAC-CTTCTAAAAATTCAAA
1 TTTGACCCTTGAACTTTTCAAAAAATTCAAA
*
467978 TTTGACTCTTGAACTTTTC-AAAAATTCAAA
1 TTTGACCCTTGAACTTTTCAAAAAATTCAAA
*
468008 TGTGAC
1 TTTGAC
468014 GCAGTTTTAA
Statistics
Matches: 99, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
29 13 0.13
30 70 0.71
31 16 0.16
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (31 bp):
TTTGACCCTTGAACTTTTCAAAAAATTCAAA
Found at i:469132 original size:31 final size:32
Alignment explanation
Indices: 469079--469144 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 32
469069 TAAGATTTTA
* * * *
469079 AATATAATAATATCTGATATTTAAA-TAATTT
1 AATATAATAATATATAAAATTTAAATTAATCT
*
469110 AATATAATGATATATAAAATTTAAATTAATCT
1 AATATAATAATATATAAAATTTAAATTAATCT
469142 AAT
1 AAT
469145 TTTTTATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 21 0.72
32 8 0.28
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (32 bp):
AATATAATAATATATAAAATTTAAATTAATCT
Found at i:469203 original size:22 final size:22
Alignment explanation
Indices: 469131--469203 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
469121 ATATAAAATT
* *
469131 TAAATTAATCTAATTTTTTATA
1 TAAATTAATCTAAATTTTTAAA
* *
469153 TATATT--T-TAAATATTTAATA
1 TAAATTAATCTAAATTTTTAA-A
469173 TTTAAATTAATCTAAATTTTTAAA
1 --TAAATTAATCTAAATTTTTAAA
469197 TAAATTA
1 TAAATTA
469204 TATAAATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
22 17 0.44
24 2 0.05
25 10 0.26
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAATTAATCTAAATTTTTAAA
Found at i:470748 original size:31 final size:30
Alignment explanation
Indices: 470681--470747 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
470671 AATTGTTTAT
*
470681 ATTTTTATAATTTTTAAAAAATTAAATCAA
1 ATTTTTATAATTTTTAAAAAATCAAATCAA
* *
470711 ATTTTTATTATTTTTAAAAAAATCAAAGTCTA
1 ATTTTTATAATTTTT-AAAAAATCAAA-TCAA
470743 ATTTT
1 ATTTT
470748 AATTTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 14 0.44
31 10 0.31
32 8 0.25
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAAAATCAAATCAA
Found at i:478632 original size:14 final size:14
Alignment explanation
Indices: 478613--478641 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
478603 TAATGAGACA
478613 TCATCAATTTGTTC
1 TCATCAATTTGTTC
478627 TCATCAATTTGTTC
1 TCATCAATTTGTTC
478641 T
1 T
478642 ATTCCTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.52
Consensus pattern (14 bp):
TCATCAATTTGTTC
Found at i:479929 original size:23 final size:23
Alignment explanation
Indices: 479903--479952 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
479893 AAGACATAGG
* *
479903 AAAAGCAAGCCA-TAAGGCAGAGA
1 AAAAACAAGCCACAAAGGCAGA-A
*
479926 AAAAACATGCCACAAAGGCAGAA
1 AAAAACAAGCCACAAAGGCAGAA
479949 AAAA
1 AAAA
479953 CTAAAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.58, C:0.18, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAAACAAGCCACAAAGGCAGAA
Found at i:480435 original size:15 final size:17
Alignment explanation
Indices: 480414--480454 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
480404 TAATTTTTTA
480414 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATGAT
*
480430 -AAATTATTAAAATGAT
1 AAAATTATAAAAATGAT
480446 AAAATTATA
1 AAAATTATA
480455 TTTTTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATTATAAAAATGAT
Found at i:489101 original size:6 final size:6
Alignment explanation
Indices: 489086--489118 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
489076 ACGTTACTTC
489086 TTTTTG -TTTTG TTTTTG -TTTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
489119 CTTTGAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:489102 original size:11 final size:11
Alignment explanation
Indices: 489086--489117 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
489076 ACGTTACTTC
489086 TTTTTGTTTTG
1 TTTTTGTTTTG
489097 TTTTTGTTTTG
1 TTTTTGTTTTG
489108 TTTTTGTTTT
1 TTTTTGTTTT
489118 TCTTTGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (11 bp):
TTTTTGTTTTG
Done.