Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010923.1 Kokia drynarioides strain JFW-HI SEQ_125891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1890
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1190 original size:21 final size:21

Alignment explanation


    Indices: 1164--1206  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1154 TAGGGTCCAT

                  *      *       
       1164 TTGCCCTGGAGGAGTAGAGTA
          1 TTGCCCGGGAGGAATAGAGTA

                                 
       1185 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCGGGAGGAATAGAGTA

             
       1206 T
          1 T

       1207 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.14, G:0.37, T:0.23


Consensus pattern (21 bp):   
TTGCCCGGGAGGAATAGAGTA

Found at i:1331 original size:45 final size:45

Alignment explanation


    Indices: 1201--1337  Score: 159
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1191 GGGAGGAATA

                  *   *              *  *           **   
       1201 GAGTATCGCGATGGCTCGTCAAACTCAGCCTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                   *                *                     
       1246 GAGTATTACGGTAGG-TCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGT-GGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                               *         *            *  
       1291 GAGTATTGCGGTGGCTCGTTAAACTGAGGTTGATATCCTTGGTTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
       1336 GA
          1 GA

       1338 TGAGCTATGC


Statistics
Matches: 77,  Mismatches: 13, Indels: 4
        0.82            0.14        0.04

Matches are distributed among these distances:
  44    2  0.03
  45   73  0.95
  46    2  0.03

ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.