genome.fa.s10925.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010925.1 Kokia drynarioides strain JFW-HI SEQ_125893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  313145

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12563--12603	22	1.9	21	90	5	64	4	9	0	85	0.73
12564--12613	22	2.3	22	82	6	57	6	10	2	82	0.92
15692--15732	18	2.3	18	91	0	64	14	31	4	48	1.65
20200--20384	51	3.6	51	85	3	230	33	15	22	28	1.95
27867--27949	42	2.0	42	100	0	166	31	9	27	31	1.89
40335--40489	23	6.7	23	83	0	193	34	5	14	45	1.68
46861--46899	15	2.6	14	92	8	60	0	38	0	61	0.96
46861--46899	18	2.2	18	90	9	62	0	38	0	61	0.96
49030--49062	12	3.0	11	87	12	50	63	3	0	33	1.10
57333--57367	18	1.9	18	94	0	61	74	8	2	14	1.17
62566--62609	18	2.5	18	88	3	63	59	13	11	15	1.62
63011--63065	27	2.1	25	86	6	74	5	38	0	56	1.23
76101--76155	16	3.7	15	78	14	60	72	0	27	0	0.85
76099--76147	20	2.5	19	87	6	71	73	0	26	0	0.83
77833--77861	14	2.1	14	100	0	58	34	27	13	24	1.93
78961--78993	15	2.2	15	94	0	57	75	0	24	0	0.80
79369--79412	17	2.6	17	81	0	52	18	6	11	63	1.48
80060--80097	17	2.2	18	90	4	60	42	2	2	52	1.29
87210--87242	14	2.3	15	89	5	50	78	0	21	0	0.75
90629--90673	23	2.0	23	83	16	58	8	15	6	68	1.36
93387--93458	36	2.0	36	91	5	119	43	16	16	23	1.88
93453--93937	97	4.9	97	76	5	361	35	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93945--94733	42	18.5	42	81	4	622	33	28	14	23	1.94
93945--94734	84	9.3	83	83	3	799	33	28	14	23	1.93
93945--94734	126	6.2	126	81	4	841	33	28	14	23	1.93
109788--109820	2	16.5	2	100	0	66	51	0	0	48	1.00
115591--115629	14	2.7	15	80	8	53	25	7	10	56	1.59
116273--116318	20	2.2	20	80	3	56	23	2	2	71	1.08
121817--121853	13	2.8	13	100	0	74	75	0	8	16	1.02
121880--121932	5	9.8	5	80	15	61	22	3	0	73	0.99
121922--121975	19	2.8	20	73	21	51	22	5	5	66	1.34
123449--123512	32	2.0	32	96	0	119	29	14	12	43	1.81
126714--126767	19	2.9	18	81	10	65	61	11	5	22	1.50
140228--140277	26	1.9	26	91	0	82	50	8	16	26	1.72
148504--148534	16	1.9	16	93	0	53	25	19	3	51	1.62
152328--152390	30	2.1	30	96	0	117	19	14	22	44	1.86
157142--157180	21	1.9	21	89	5	62	12	12	7	66	1.43
160101--160146	16	2.9	16	77	9	58	82	0	13	4	0.81
160085--160146	24	2.5	26	76	12	67	79	0	16	4	0.90
163180--163213	16	2.1	17	88	5	52	23	8	32	35	1.86
166436--166496	20	3.0	20	81	15	56	47	3	9	39	1.53
166454--166496	20	2.0	22	86	13	63	53	2	9	34	1.46
167950--168009	21	2.8	22	80	7	70	36	13	20	30	1.90
173317--173367	20	2.5	21	81	15	54	47	0	11	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187253--187363	56	2.0	56	100	0	222	14	16	33	36	1.89
191077--191218	36	4.0	36	87	4	191	24	24	14	35	1.93
191077--191210	70	1.9	71	86	4	191	23	24	14	37	1.92
191234--191282	19	2.6	19	86	0	71	22	28	18	30	1.97
196683--196716	12	2.7	13	86	9	52	5	2	11	79	1.02
198190--198229	20	2.0	20	100	0	80	30	15	10	45	1.78
198616--198652	17	2.2	17	90	0	56	10	10	0	78	0.97
202378--202412	12	2.9	12	86	0	52	5	42	5	45	1.51
218646--218726	28	2.9	28	90	0	126	22	14	19	43	1.88
227313--227356	23	2.0	22	86	4	61	45	15	0	38	1.47
237196--237221	7	3.7	7	100	0	52	30	0	53	15	1.42
237613--237656	23	2.0	22	86	4	61	45	15	0	38	1.47
247995--248041	11	4.3	11	78	10	51	63	2	34	0	1.06
256937--257006	37	1.9	37	88	2	106	31	30	15	22	1.95
257104--257165	26	2.4	26	78	5	72	27	25	20	25	1.99
260403--260449	12	3.9	12	83	16	62	0	21	0	78	0.75
260412--260458	25	2.0	22	88	12	67	0	21	0	78	0.75
260401--260458	15	3.9	15	78	13	66	0	20	0	79	0.74
261033--261073	19	2.2	19	86	8	57	63	9	4	21	1.44
263369--263403	15	2.4	15	90	4	54	65	5	14	14	1.44
270099--270140	20	2.1	20	100	0	84	26	28	9	35	1.88
277382--277414	6	5.3	6	92	7	57	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288704--288743	17	2.4	17	95	0	71	5	15	0	80	0.88
311821--311946	50	2.5	50	80	2	137	34	12	27	25	1.92
312003--312212	79	2.6	76	82	8	231	32	23	16	27	1.96
312003--312153	39	3.9	39	71	10	112	33	22	17	26	1.96

Tables:   1

The End!