Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010926.1 Kokia drynarioides strain JFW-HI SEQ_125894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2433
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29


Found at i:1619 original size:244 final size:244

Alignment explanation


    Indices: 1190--1678  Score: 897
    Period size: 244  Copynumber: 2.0  Consensus size: 244

       1180 TATCTAAGTT

                                                                             
       1190 TTCCTTTCAAATTAGCCACACACTCAAACTCTCTAACCTACCAAACACAAAAATAATCTCCAATT
          1 TTCCTTTCAAATTAGCCACACACTCAAACTCTCTAACCTACCAAACACAAAAATAATCTCCAATT

                                                                   *         
       1255 TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCGTCCTTGAAT
         66 TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCATCCTTGAAT

                          * *                                                
       1320 TAGATCCATAGTTCGTTATTTTTAACAAATTGAGATAAAATTTTGACTTTTTATGATCAAACAAT
        131 TAGATCCATAGTTCATCATTTTTAACAAATTGAGATAAAATTTTGACTTTTTATGATCAAACAAT

                                     *          *            
       1385 GTGTAACACCTCGAAACCTGACTTAGAAGTTTCGATTGGATTTCAGAGG
        196 GTGTAACACCTCGAAACCTGACTTAAAAGTTTCGATCGGATTTCAGAGG

                                                   *                         
       1434 TTCCTTTCAAATTAGCCACACACTCAAACTCTCTAACCTCCCAAACACAAAAATAATCTCCAATT
          1 TTCCTTTCAAATTAGCCACACACTCAAACTCTCTAACCTACCAAACACAAAAATAATCTCCAATT

                                                                             
       1499 TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCATCCTTGAAT
         66 TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCATCCTTGAAT

                                                  *                        * 
       1564 TAGATCCATAGTTCATCATTTTTAACAAATTGAGATAACATTTTGACTTTTTATGATCAAACAGT
        131 TAGATCCATAGTTCATCATTTTTAACAAATTGAGATAAAATTTTGACTTTTTATGATCAAACAAT

                                                        *    
       1629 GTGTAACACCTCGAAACCTGACTTAAAAGTTTCGATCGGATTTCGGAGG
        196 GTGTAACACCTCGAAACCTGACTTAAAAGTTTCGATCGGATTTCAGAGG

             
       1678 T
          1 T

       1679 CACATGGACC


Statistics
Matches: 236,  Mismatches: 9, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 244  236  1.00

ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34


Consensus pattern (244 bp):   
TTCCTTTCAAATTAGCCACACACTCAAACTCTCTAACCTACCAAACACAAAAATAATCTCCAATT
TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCATCCTTGAAT
TAGATCCATAGTTCATCATTTTTAACAAATTGAGATAAAATTTTGACTTTTTATGATCAAACAAT
GTGTAACACCTCGAAACCTGACTTAAAAGTTTCGATCGGATTTCAGAGG
Done.