Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010927.1 Kokia drynarioides strain JFW-HI SEQ_125895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9772
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.27
Warning! 271 characters in sequence are not A, C, G, or T
Found at i:486 original size:216 final size:216
Alignment explanation
Indices: 5--5014 Score: 6050
Period size: 216 Copynumber: 23.2 Consensus size: 216
1 ATTT
* *
5 AAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAGACCAAATGATGCGA-TTCCTCGAGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCA
* * * * *
69 TGGAATGTTCAGAAAAA-TGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTAAGTTA
65 TGGAATGTTC-GAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTA
* * * * * * * ** * *
133 TAAAAGATCTCCTCAAAGTTGGACAAGTTCG-GAGTTTGTCCAAGAACCTAGAGTGATACAATTC
129 AAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
*
197 TCTCGTAAATAAGTTTTTAATTC
194 TCACGTAAATAAGTTTTTAATTC
* *
220 AAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
285 GGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * *
350 AAATAACTCATAAAAGTTTGACAAGTTCGAAAGTTTGTACAA-AGACAAAGAGAGAAACAATTCT
131 AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCT
414 CACGTAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * * * *
436 AAAGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGGCCAAATGATGCGATTTGCCGAGTAC
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * *
501 GGAATATTCGAAAAATTGCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
*
566 AAAGAAC-CAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCT
131 AAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
630 CACGTAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* ** * * * * * * *
652 GAAGAAAAAAACTTGTATACAAAATGACAAACTATTTAGACTAAATGATGTGATTTCTCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
717 GGAATGTTCGGAAAATTGCTCAAAAGAATGGATCTTCTT-ATTACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
781 AAATATA-TCGTAAAAGTTTGACAGGTTC-AGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTC
131 AAAGA-ACTCATAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* *
844 TCATGTAAATAACTTTTTAATTC
194 TCACGTAAATAAGTTTTTAATTC
* * * * * *
867 AAAGACCAAAACTTGTATACAAAATAATAAACTATTTAGACCAAATGATGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
932 AGCATGTTGGGAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * * * *
997 AAATAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAATAGAGAGAGAAACAAATCTC
131 AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
1062 TCGTAAATAAGTTTTTAATTC
196 ACGTAAATAAGTTTTTAATTC
* * * * * *
1083 AACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATTG-AATTTGCCAAGTA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGA-TGCGATTTCCCGAGCA
* * * * * * * * * *
1147 TGGAATATTCGGAAAATTGCTCGAAGAAAAGGATCGTCTTGAATACTTTAAGGATCCGAAGTTAT
65 TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* *
1212 AAAAGAACT-AGTAAAAGTTTGTCAAGTTCAAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
130 AAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
1276 TCACGTAAATAAGTTTTTAATTC
194 TCACGTAAATAAGTTTTTAATTC
* * * *
1299 AAAGACCAAAATTTGTTTACAAACTGACAAACTATTTAGACCAAATGATGTGATTTCCC-AGGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCA
* * * * *
1363 TGGAATGTTCGAAAAATTGCTCTAAGGAATGAATCTTGTTGAGTACTTTAGGGAACCGAAGTTAA
65 TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* * * * *
1428 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCCTCCAAGAACAAAGAGCGAAATAATTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
1493 CACGTAAATATGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * ** *
1515 AAAGACCAAAACATGTATT-CCAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAAAGGA
1 AAAGACCAAAACTTGT-TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * *
1579 TGGAATGTTCTAAAAATTGCTCAAAGGAATGGATCTTATTGAATACTCTAGGGAATTGAAGTTAA
65 TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* * * * * *
1644 AAAATAACTCGTAAGAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
1709 CACGTAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * * * * * *
1731 AAAGACCAAAACATGTTTACAAAATGATAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * *
1796 GGAATGTTCAAAAAATTACATTAAA-AAATGGATCTTGTTGAATACTTTAGGGAAGTGAAGTTAA
66 GGAATGTTCGAAAAATTGC-TCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* * * * *
1860 AAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGACAGAGACAATTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
1925 CACGT-AATAAGTTTTTAATTT
195 CACGTAAATAAGTTTTTAATTC
* *
1946 AAAGACCAAAACTTATTTGCAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * **
2011 GGATTGTTC-AGAAAATTGCTCGAAAGG-ATTGATCGTCTTGAATACTTAAAGGATCCAAAGTTA
66 GGAATGTTCGA-AAAATTGCTC-AAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTA
* * * * *
2074 TAAAAGAACT-AGTAAAAGTTTGACAGGTTTGAAACTTCGTCCAAGAACAAAGAAAGAAACAATT
129 AAAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
*
2138 CTCACGTAAATAAGTTTATAATTC
193 CTCACGTAAATAAGTTTTTAATTC
* *
2162 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
2227 TGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* *
2292 AAACAACTCATAAAAGTTTGACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
2357 ACGTAAATAAGTTTTTAATTC
196 ACGTAAATAAGTTTTTAATTC
* * * * *
2378 AAAGACCAAAACTTGTTTGCAAAATGACAAACAATTTAGGCCAAATGACGTGATTTGCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * * * * * ** *
2443 GAAATATTTGAAAAATTGCTCGAAGGAACGGATCGTCTTGAACAATCTAAGTATCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
2508 AAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAATAAATAATTC
131 AAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTC
*
2571 TCACGTAAATAACTTTTTAATTC
194 TCACGTAAATAAGTTTTTAATTC
* * * *
2594 AAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * **
2659 GAAATATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCTAAAGTTATG
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* *
2724 AAAGAACT-AGTAAAAGTTTGACAACTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCT
131 AAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
2788 CACATAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * * *
2810 AACGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGGGATTTGCCGACCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * * * ** *
2875 GGAAAATTC-AAAAATTTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTAT
66 GGAATGTTCGAAAAA-TTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* * *
2939 AAAAGAACT-AGTAAAAGGTTGACAAGTACGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
130 AAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
*
3003 TCACGTAAATAAGTTTTTAATTG
194 TCACGTAAATAAGTTTTTAATTC
* * * * * *
3026 AAAGACCAAAACATGTTTGCAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
3091 GGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGTTGAATAGTTTAGGGAACTGAAGTTAA
66 GGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* * * * * * * *
3155 AAAATAACTCGTAACAGTTTGACATGTTTGGAAGTTCATCCAAGAACAAAGTGAGAAACAATTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
3220 CACGTAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * ** *
3242 AACGACCAAAATTTGTTTGCAAAACAACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * ** *
3307 GGAATTTTTGAAAAATTGCTGAAATGAATGGATCGTCTTGAATTCTTTAAGGATCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
3372 AAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACACAGAGAGAAACAATTAT
131 AAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
3436 CACGTAAATAAGTTTTTAATTC
195 CACGTAAATAAGTTTTTAATTC
* * *
3458 AAAGACCAGAAGTTGTTTGCTAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * *
3523 GGAATATTCGAAAACTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATC-CAATGTTAT
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAA-GTTAA
* * *
3587 AAAAGAACT-AGTAAAAGGTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
130 AAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* *
3651 TCACGTAAATAAATTTTTAATTG
194 TCACGTAAATAAGTTTTTAATTC
* * * * * *
3674 AAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* ** *
3739 GGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAA
66 GGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* ** * * * *
3803 AAAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
3868 CACGT-AATAAGTTTTTAATTT
195 CACGTAAATAAGTTTTTAATTC
* * *
3889 AAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAAATGATGCGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * *
3953 GGAATGCTC-AGAAAATTGCTTTAAA-GAATAGATCGTCTTGAATACTTTAAGGATC-AAATGTT
66 GGAATGTTCGA-AAAATTGC-TCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAA-GTT
* * * * * * *
4015 ATAAAAGAACT-AGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAGATCGAAGAGAGAAACAAT
128 AAAAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
4079 TCTCACGTAAATAAGTTTTTAATTC
192 TCTCACGTAAATAAGTTTTTAATTC
* * * *
4104 AAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
4169 GGAATGTTCGAAAAGTTGCTCGAAGGAATGGATCTTGTTGAATACTCTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
4234 AAATAACTCATAAAAGTTTGACAATTTCAAAAGTTCGTCCAAGAACAAAGAGTGAAACAATTCTC
131 AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
4299 ACGTAAATAAGTTTTTAATTC
196 ACGTAAATAAGTTTTTAATTC
* * * * *
4320 AAAGACCAAAACTTGTTTGCAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* ** *
4385 GGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAA
66 GGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAA
* ** * * * *
4449 AAAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCT
130 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
4514 CACGT-AATAAGTTTTTAATTT
195 CACGTAAATAAGTTTTTAATTC
* * *
4535 AAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAAATGATGCGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * *
4599 GGAATGCTC-AGAAAATTGCTTTAAA-GAATAGATCGTCTTGAATACTTTAAGGATC-AAATGTT
66 GGAATGTTCGA-AAAATTGC-TCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAA-GTT
* * * * * * *
4661 ATAAAAGAACT-AGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAGATCGAAGAGAGAAACAAT
128 AAAAAAGAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
4725 TCTCACGTAAATAAGTTTTTAATTC
192 TCTCACGTAAATAAGTTTTTAATTC
* * * *
4750 AAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
4815 GGAATGTTCGAAAAGTTGCTCGAAGGAATGGATCTTGTTGAATACTCTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * *
4880 AAATAACTCATAAAAGTTTGACAATTTCAAAAGTTCGTCTAAGAACAAAGAGTGAAACAATTCTC
131 AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
4945 ACGTAAATAAGTTTTTAATTC
196 ACGTAAATAAGTTTTTAATTC
* * *
4966 AAAGACCAAAACTTGTTTGCAAAATGACAAACAATATAGGCCAAATGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGAT
5015 TGCTCGAAGG
Statistics
Matches: 4134, Mismatches: 597, Indels: 127
0.85 0.12 0.03
Matches are distributed among these distances:
213 8 0.00
214 313 0.08
215 613 0.15
216 3163 0.77
217 37 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGTTAAA
AAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAATTC
Found at i:1392 original size:432 final size:431
Alignment explanation
Indices: 5--8263 Score: 9454
Period size: 432 Copynumber: 19.2 Consensus size: 431
1 ATTT
* *
5 AAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAGACCAAATGATGCGA-TTCCTCGAGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCA
* * * * * * *
69 TGGAATGTTCAGAAAAA-TGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTAAGTTA
65 TGGAATGTTC-GAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTA
* * * * * * * * ** * *
133 TAAAAGATCTCCTCAAAGTTGGACAAGTTCG-GAGTTTGTCCAAGAACCTAGAGTGATACAATTC
129 AAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * *
197 TCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACC
194 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACC
* * * * *
262 AAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTGTTGAA
259 AAATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAA-AAATGGATCGTCTTGAA
* * * * * * *
327 TACTTTAGGGAACCGAAGTTAAAAAATAACTCA-TAAAAGTTTGACAAGTTCGAAAGTTTGTACA
323 TACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
391 A-AGACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
387 AGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
436 AAAGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGGCCAAATGATGCGATTTGCCGAGTAC
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * *
501 GGAATATTCGAAAAATTGCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* *
566 AAAGAAC-CAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCT
131 AAATAACTC-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* ** * * *
630 CACGTAAATAAGTTTTTAATTCGAAGAAAAAAACTTGTATACAAAATGACAAACTATTTAGACTA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCA
* * * * * *
695 AATGATGTGATTT-CTCAAGGATGGAATGTTCGGAAAATTGCTCAAAAGAATGGATCTTCTT-AT
260 AATGATGCGATTTGC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAA-AATGGATCGTCTTGAA
* * ** * * * *
758 TACTTTAGGGAACTGAAGTTAAAAAATATA-TCGTAAAAGTTTGACAGGTTC-AGAAGTTCGTCC
323 TACTTTAAGGATCCAAAGTTATAAAAGA-ACTAGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCC
* * *
821 AAGAACAAAGAGAGAAATAATTCTCATGTAAATAACTTTTTAATTC
386 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
867 AAAGACCAAAACTTGTATACAAAATAATAAACTATTTAGACCAAATGATGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
932 AGCATGTTGGGAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * *
997 AAATAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAATAGAGAGAGAAACAAATCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
1062 TCGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * * * *
1127 ATGATTG-AATTTGCCAAGTATGGAATATTCGGAAAATTGCTCGAAGAAAAGGATCGTCTTGAAT
261 ATGA-TGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAA-AAATGGATCGTCTTGAAT
* * *
1191 ACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGTCAAGTTCAAAAGTTCGTCCAAG
324 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
1256 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
1299 AAAGACCAAAATTTGTTTACAAACTGACAAACTATTTAGACCAAATGATGTGATTTCCC-AGGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCA
* * *
1363 TGGAATGTTCGAAAAATTGCTCTAAGGAATGAATCTTGTTGAGTACTTTAGGGAACCGAAGTTAA
65 TGGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAA
* * *
1428 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCCTCCAAGAACAAAGAGCGAAATAATTCT
130 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * *
1493 CACGTAAATATGTTTTTAATTCAAAGACCAAAACATGTATT-CCAAATGACAAACTATTTAGACC
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTGCAAAATGACAAACTATTTAGACC
* * ** * *
1557 AAATGATGCGATTT-CCAAAGGATGGAATGTTCTAAAAATTGCTC-AAAGGAATGGATCTTATTG
259 AAATGATGCGATTTGCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAA--AATGGATCGTCTTG
* * ** * * * * * *
1620 AATACTCTAGGGAAT-TGAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGGAAGTTCGTC
321 AATACTTTAAGG-ATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
*
1684 CAAGAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTC
385 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * * *
1731 AAAGACCAAAACATGTTTACAAAATGATAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * ** *
1796 GGAATGTTCAAAAAATTACAT-TAAAAAATGGATCTTGTTGAATACTTTAGGGAAGTGAAGTTAA
66 GGAATGTTCGAAAAATTGC-TCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAA
* * *
1860 AAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGACAGAGACAATTCT
130 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * *
1925 CACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTATTTGCAAAATGACAAATTATTTAGACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCA
* * * * *
1989 AATGATGCGATTTCCCGAGCATGGATTGTTCAGAAAATTGCTCGAAAGGATTGATCGTCTTGAAT
260 AATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA-AATGGATCGTCTTGAAT
* * * *
2054 ACTTAAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAGGTTTGAAACTTCGTCCAAG
324 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
2119 AACAAAGAAAGAAACAATTCTCACGTAAATAAGTTTATAATTC
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
2162 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* *
2227 TGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * *
2292 AAACAACTCATAAAAGTTTGACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* *
2357 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACAATTTAGGCCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * * * * * * * *
2422 ATGACGTGATTTGCCGAGCATGAAATATTTGAAAAATTGCTCGAAGGAACGGATCGTCTTGAACA
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAA-AAATGGATCGTCTTGAATA
* * * *
2487 ATCTAAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAA-A
325 CTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * * *
2551 GACAAAGAAATAAATAATTCTCACGTAAATAACTTTTTAATTC
390 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
2594 AAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * **
2659 GAAATATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCTAAAGTTATG
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
2724 AAAGAACTAGTAAAAGTTTGACAACTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* *
2789 ACATAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * ** *
2854 ATGATGGGATTTGCCGACCATGGAAAATTC-AAAAATTTGCT-GAAATGAATGGATCGTCTTGAA
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAA--AATGGATCGTCTTGAA
* * *
2917 TACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTACGGAAGTTCGTCCAA
323 TACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
*
2982 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTG
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
3026 AAAGACCAAAACATGTTTGCAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** *
3091 GGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTGAATAGTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * * *
3156 AAATAACTCGTAACAGTTTGACATGTTTGGAAGTTCATCCAAGAACAAAGTGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * **
3221 ACGTAAATAAGTTTTTAATTCAACGACCAAAATTTGTTTGCAAAACAACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * *
3286 ATGATGCGATTTGCCGAGCATGGAATTTTTGAAAAATTGCT-GAAATGAATGGATCGTCTTGAAT
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA--AATGGATCGTCTTGAAT
* *
3350 TCTTTAAGGATCCAAAGTTATAAAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
324 ACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* *
3414 GAACACAGAGAGAAACAATTATCACGTAAATAAGTTTTTAATTC
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
3458 AAAGACCAGAAGTTGTTTGCTAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * *
3523 GGAATATTCGAAAACTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATC-CAATGTTAT
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAA-GTTAA
* * * * *
3587 AAAAGAACTAGTAAAAGGTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
130 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * *
3652 CACGTAAATAAATTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCA
* * * * * * * * **
3717 AGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGATGAAT
260 AATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTC-GAAAAATGGATCGTCTTGAAT
* * * * * * * * *
3782 ACTTTAGGGAACTAAAGTTAAAAAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCCAAG
324 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
3847 AACAAAGAGAGAAACACTTCTCACGT-AATAAGTTTTTAATTT
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
3889 AAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAAATGATGCGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * *
3953 GGAATGCTC-AGAAAATTGCTTTAAAGAATAGATCGTCTTGAATACTTTAAGGATC-AAATGTTA
66 GGAATGTTCGA-AAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAA-GTTA
* * * * * * * * *
4016 TAAAAGAACTAGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAGATCGAAGAGAGAAACAATTC
129 AAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * * *
4081 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGACC
194 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACC
* * * *
4146 AAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAGTTGCTCGAAGGAATGGATCTTGTTGA
259 AAATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAA-AAATGGATCGTCTTGA
* * * ** * * * *
4210 ATACTCTAGGGAACTGAAGTTAAAAAATAACTCA-TAAAAGTTTGACAATTTCAAAAGTTCGTCC
322 ATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
*
4274 AAGAACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTC
386 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
4320 AAAGACCAAAACTTGTTTGCAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * *
4385 GGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * *
4450 AAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
4515 ACGT-AATAAGTTTTTAATTTAAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * * ** *
4578 ATGATGCGATTTACCGAGCATGGAATGCTCAGAAAATTGCTTTAAAGAATAGATCGTCTTGAATA
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA-AATGGATCGTCTTGAATA
* * * *
4643 CTTTAAGGAT-CAAATGTTATAAAAGAACTAGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAG
325 CTTTAAGGATCCAAA-GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
4707 ATCGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
4750 AAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
4815 GGAATGTTCGAAAAGTTGCTCGAAGGAATGGATCTTGTTGAATACTCTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * *
4880 AAATAACTCATAAAAGTTTGACAATTTCAAAAGTTCGTCTAAGAACAAAGAGTGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
4945 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACAATATAGGCC-A
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * *
5009 A--AT--GA-TTGCTCGA--A-GGAA----CGG---ATCG-TC------TTGA---AC---AAT-
261 ATGATGCGATTTGC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAAAATGGATCGTCTTGAATA
* *
5045 -TT-AAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAA-A
325 CTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* *
5107 GACAAAGAAAGAAACAATTCTCACGTAAATAACTTTTTAATTC
390 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
5150 AAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTCCCAAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * * **
5215 GAAATATTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGATCTAAAGTTATG
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
5280 AAAGAATTAGTAAAAGTTTGACAACTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
5345 ACATAAATAAGTTTTTAATTCAACGACCAAAATTTGTTTGCAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* ** * * *
5410 ATGATGCGATTTGCCGACCATGGAAAATTC-GAAAATTTGCT-TAAATGAATGGATTGTATTGAA
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAA--AATGGATCGTCTTGAA
* * * * *
5473 TACTTTAAGGATCCAAAGTTATAGAAGAACTAGTAAAAGGTTGACAAGTGCGGAAGTTAGTCCAA
323 TACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
*
5538 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTG
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** * * * *
5582 AAAGACCAAAACTTGTTTACAAAATGACAAAATATTTATTCCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* ** * *
5647 GGAATGTTCGAAAAATTGCGCTAAAAAATGGATCCTGTTGAATAGTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * *
5712 AAATAACTCGTAACAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * **
5777 ACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * ** * *
5842 ATGATGTGATTTGCCGAGGATGGAAAATTCGAAAAACTGCT-GAAATGAATGGATCGTCTTGAAT
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA--AATGGATCGTCTTGAAT
* *
5906 ACTTTAAGGATCCCAAGTTATAAAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
324 ACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* *
5970 GAACAAAGAGACAAACAATTCTCACATAAATAAGTTTTTAATTC
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
6014 AACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATGCGATTTGCCGACCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * * * * ** *
6079 GGAAAATTCGAAAATTTGCT-TAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTAT
66 GGAATGTTCGAAAAATTGCTCT-AAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAA
* * * * * *
6143 AGAAGAACTAGTAAAAGGTTGACAAGTGCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
130 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * * *
6208 CACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGAAAAAATATTTATACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCA
* * * * * * * * * *
6273 AGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCGCTAAAAAATGGATCCTGTTGAAT
260 AATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTC-GAAAAATGGATCGTCTTGAAT
* * * ** * * * * * * *
6338 AGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGACAAGTTTGGAAGTTCATCCAAG
324 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
6403 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
6446 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCTATCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
*
6511 GGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * *
6576 AAATAACTCATAAAAGTTTTACAATTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
6641 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGGCCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
**
6706 ATGATGCGATTTGCCGAGCATGGAAAATTCGGAAAATTGCT-GAAATGAATGGATCGTCTTGAAT
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA--AATGGATCGTCTTGAAT
*
6770 ACATTAAGGATCCAAAGTTAT---A-AACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
324 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
6831 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
389 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
6874 AACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * * * * * * **
6939 GGAAAATTCGGAAAATTGC-CGAAATGAATGGATCGTCTTGAATACATTAAGGATCCAAAGTT--
66 GGAATGTTCGAAAAATTGCTC-TAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAA
* * * *
7001 -ATA-AACTAGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCT
130 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* *
7064 CACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCA
* * * * ** *
7129 AATGATACGATTTACTGAGCTTGGAAAATTTGGAAAATTGCT-GAAATGAATGGATCGTCTTGAA
260 AATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAA--AATGGATCGTCTTGAA
* * * * *
7193 TACTTTAAGGTTCCAAAGTTATAAAAGAACTAATAAAAGGTTGTCAGGTTCGAAAGTTCGTCCAA
323 TACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * *
7258 GAATAAAGAGAGAAACAATTGTCACCTAAATAAGTTTTTAATTC
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
7302 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
**
7367 GGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
*
7432 AAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
7497 ACGT-AATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTGCAAAATGACAAATTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * ** * *
7561 ATAATGCGATTT-CTCGACCATGGAATGTTTAGAAAATTGCTCGAAAGAATAGATCGTCATGAAT
261 ATGATGCGATTTGC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAA-AATGGATCGTCTTGAAT
* * ****************
7625 AATTGAAGGATCCAAAGTTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
324 ACTTTAAGGATCCAAAGTTATAA--------------------------AAGAACTAGTAAAAGT
********
7690 NNNNNNNNTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
363 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
7755 ATTC
428 ATTC
* ** * * * * *
7759 AACGACCAAAACTTGTTTGCAAAGCGACAAACTATTTAGACCAAATGATACGATTTACTGAACTT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * ** * * * * * * ** ** *
7824 GGAAAATTTGGAAAATTGCTGAAATGAATGGATCGTCTTGATTATTTTAAGGTTCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
* * * * * * *
7889 AAAGAACTAGAAAAAGGTTGTCAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTGTC
131 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
7954 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
* * * * * * * * *
8019 GTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCACTAAAAATATGGATCTTCTTGAAT
261 ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTC-GAAAA-ATGGATCGTCTTGAAT
* *** * * * *
8084 ACTTTACGG-TACTGGAGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAA
324 ACTTTAAGGAT-CCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* *
8148 GAACAAAGAGAAAAACAATTCTCACGT-AATAAGTTTTTAATTT
388 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
8191 AAAGACCAAAAGTTGTTTGCAAAATGAAAAATTATTTAGACCAAATGATGCGATTTCTCGACCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
8256 GGAATGTT
66 GGAATGTT
8264 TAGAAAATTA
Statistics
Matches: 6676, Mismatches: 1003, Indels: 297
0.84 0.13 0.04
Matches are distributed among these distances:
399 1 0.00
400 311 0.05
401 8 0.00
403 5 0.00
405 5 0.00
406 5 0.00
407 1 0.00
408 4 0.00
409 3 0.00
411 1 0.00
412 1 0.00
414 1 0.00
415 2 0.00
416 2 0.00
417 3 0.00
420 2 0.00
423 3 0.00
424 198 0.03
425 3 0.00
426 3 0.00
427 7 0.00
428 361 0.05
429 17 0.00
430 713 0.11
431 1099 0.16
432 3507 0.53
433 67 0.01
434 6 0.00
457 218 0.03
458 88 0.01
459 31 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (431 bp):
AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
ATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCGAAAAATGGATCGTCTTGAATAC
TTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
CAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
Found at i:1731 original size:648 final size:648
Alignment explanation
Indices: 5--8318 Score: 9842
Period size: 648 Copynumber: 12.9 Consensus size: 648
1 ATTT
* *
5 AAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAGACCAAATGATGCGA-TTCCTCGAGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCA
* ****
69 TGGAATGTTCAGAAAAA-TGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTAAGTTA
65 TGGAATGTTC-GAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTA
* ** * * * * ** * *
133 TAAAAGATCTCCTCAAAGTTGGACAAGTTCG-GAGTTTGTCCAAGAACCTAGAGTGATACAATTC
129 TAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* *
197 TCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACC
194 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* *
262 AAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTGTTGAA
259 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAA
* * * *
327 TACTTTAGGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGACAAGTTCGAAAGTTTGTACAA
324 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
392 -AGACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
389 GA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
* * * * * * * *
456 AAAATGAAAAACTATTTAGGCCAAATGATGCGATTTGCCGAGTACGGAATATTCGAAAAATTGCT
453 AAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCT
* * * * * *
521 CGAAGGAAA-GGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACCAGTAAAAGTTT
518 CGAA-AAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTT
*
585 GACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
582 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
650 TC
647 TC
* ** * * * * * * *
652 GAAGAAAAAAACTTGTATACAAAATGACAAACTATTTAGACTAAATGATGTGATTTCTCAAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * ** *
717 GGAATGTTCGGAAAATTGCTCAAAAGAATGGATCTTCTT-ATTACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* * * *
781 AAATATA-TCGTAAAAGTTTGACAGGTTC-AGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTC
131 AAAGA-ACTAGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * * * *
844 TCATGTAAATAACTTTTTAATTCAAAGACCAAAACTTGTATACAAAATAATAAACTATTTAGACC
194 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * *
909 AAATGATGCGATTTCCCAAGGATAGCATGTTGGGAAAATTGCTCAAAGGAATGGATCTTGTTGAA
259 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAA
* *
974 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAA
324 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * * * *
1039 GAATAGAGAGAGAAACAAATCTCTCGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCA
389 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
* * * * * * *
1104 AAACGACAAACTATTTAGACCAAATGATTG-AATTTGCCAAGTATGGAATATTCGGAAAATTGCT
454 AAATGACAAACTATTTAGACCAAATGA-CGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCT
* * * *
1168 CGAAGAAAA-GGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTT
518 CGAA-AAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTT
* *
1232 GTCAAGTTCAAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
582 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
1297 TC
647 TC
* * * *
1299 AAAGACCAAAATTTGTTTACAAACTGACAAACTATTTAGACCAAATGATGTGATTTCCC-AGGCA
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCA
* * * * * * * * *
1363 TGGAATGTTCGAAAAATTGCTCTAAGGAATGAATCTTGTTGAGTACTTTAGGGAACCGAAGTTAA
65 TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTAT
* * * * *
1428 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCCTCCAAGAACAAAGAGCGAAATAATTCT
130 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * *
1493 CACGTAAATATGTTTTTAATTCAAAGACCAAAACATGTATT-CCAAATGACAAACTATTTAGACC
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACC
** * * *
1557 AAATGATGCGATTTCCAAAGGATGGAATGTTCTAAAAATTGCTCAAAGGAATGGATCTTATTGAA
259 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAA
* * * * *
1622 TACTCTAGGGAATTGAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGGAAGTTCGTCCAA
324 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * *
1687 GAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACA
389 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
* * * *
1752 AAATGATAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCAAAAAATTACAT
454 AAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC-T
* * * * *** * *
1817 -TAAAAAATGGATCTTGTTGAATACTTTAGGGAAGTGAAGTTAAAAAATAACTCGTAAAAGTTCG
518 CGAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTG
* *
1881 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGACAGAGACAATTCTCACGT-AATAAGTTTTTAATT
583 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
*
1945 T
648 C
* *
1946 AAAGACCAAAACTTATTTGCAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
2011 GGATTGTTC-AGAAAATTGCTCGAAAGG-ATTGATCGTCTTGAATACTTAAAGGATCCAAAGTTA
66 GGAATGTTCGA-AAAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTA
* * * *
2074 TAAAAGAACTAGTAAAAGTTTGACAGGTTTGAAACTTCGTCCAAGAACAAAGAAAGAAACAATTC
129 TAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* *
2139 TCACGTAAATAAGTTTATAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
194 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* *
2204 AAATGATGCGATTTCCCGAGCATTGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAA
259 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAA
* * *
2269 TACTTTAGGGAACTGAAGTTAAAAAACAACTCATAAAAGTTTGACAATTTCGAAAGTTCGTCCAA
324 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
2334 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
389 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
* * * * * * * * *
2399 AAATGACAAACAATTTAGGCCAAATGACGTGATTTGCCGAGCATGAAATATTTGAAAAATTGCTC
454 AAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTC
** * * * * * * * *
2464 GAAGGAACGGATCGTCTTGAACAATCTAAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGA
519 GAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGA
* * * * *
2529 CAAGTTCGAAAGTTCGTACAA-AGACAAAGAAATAAATAATTCTCACGTAAATAACTTTTTAATT
584 CAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
2593 C
648 C
* * * *
2594 AAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
2659 GAAATATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCTAAAGTTATG
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* *
2724 AAAGAACTAGTAAAAGTTTGACAACTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTC
131 AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
2789 ACATAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * ** * * * *
2854 ATGATGGGATTTGCCGACCATGGAAAATTC-AAAAATTTGCTGAAATGAATGGATCGTCTTGAAT
261 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TTGCTCAAAGGAATGGATCTTGTTGAAT
* * ** * * * * * *
2918 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTACGGAAGTTCGTCCAAG
325 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
2983 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACATGTTTGCAA
390 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
* * *
3048 AATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCT
455 AATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCG
* * * * ** * *
3113 AAAAAATGGATCTTGTTGAATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGAC
520 AAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGAC
* * * * *
3178 ATGTTTGGAAGTTCATCCAAGAACAAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
585 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** *
3242 AACGACCAAAATTTGTTTGCAAAACAACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
3307 GGAATTTTTGAAAAATTGCTGAAATGAATGGATCGTCTTGAATTCTTTAAGGATCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* * *
3372 AAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACACAGAGAGAAACAATTAT
131 AAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * *
3436 CACGTAAATAAGTTTTTAATTCAAAGACCAGAAGTTGTTTGCTAAATGACAAACTATTTAGACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
3501 AATGATGCGATTTCCCGAGCATGGAATATTCGAAAACTTGCTCAAAGGAATGGATCGTCTTGAAT
260 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAAT
* * * * * * * * *
3566 ACTTTAAGGATC-CAATGTTATAAAAGAACTAGTAAAAGGTTGACAAGTTTGGAAGTTCGTCCAA
325 ACTTTAGGGAACTGAA-GTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * *
3630 GAACAAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTGAAAGACCAAAACTTGTTTACA
389 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
* *
3695 AAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTC
454 AAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTC
* * ** * * * * *
3760 TAAAAAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAAAAAATAACTTGTAAAAGCTCGA
519 GAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGA
* * *
3825 TAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCTCACGT-AATAAGTTTTTAATTT
584 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
3889 AAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAAATGATGCGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
3953 GGAATGCTC-AGAAAATTGCTTTAAA-GAATAGATCGTCTTGAATACTTTAAGGAT-CAAATGTT
66 GGAATGTTCGA-AAAATTGC-TCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAA-GTT
* * * * * *
4015 ATAAAAGAACTAGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAGATCGAAGAGAGAAACAATT
128 ATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
* * *
4080 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGAC
193 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* *
4145 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAGTTGCTCGAAGGAATGGATCTTGTTGA
258 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGA
* * * *
4210 ATACTCTAGGGAACTGAAGTTAAAAAATAACTCATAAAAGTTTGACAATTTCAAAAGTTCGTCCA
323 ATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
*
4275 AGAACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
388 AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
* *
4340 AAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCT
453 AAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCT
* * ** * * * * *
4405 CTAAAAAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAAAAAATAACTTGTAAAAGCTCG
518 CGAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTG
* *
4470 ATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCTCACGT-AATAAGTTTTTAATT
583 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
*
4534 T
648 C
* * *
4535 AAAGACC-AAACTTGTTTGCAAAATAACAAATTATTTAGACCAAATGATGCGATTTACCGAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
4599 GGAATGCTC-AGAAAATTGCTTTAAA-GAATAGATCGTCTTGAATACTTTAAGGAT-CAAATGTT
66 GGAATGTTCGA-AAAATTGC-TCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAA-GTT
* * * * * *
4661 ATAAAAGAACTAGTAAAAGTTTGACAGGTTTGACACTTCGTCCAAGATCGAAGAGAGAAACAATT
128 ATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
* * *
4726 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAAAATATTTAGAC
193 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* *
4791 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAGTTGCTCGAAGGAATGGATCTTGTTGA
258 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGA
* * * * *
4856 ATACTCTAGGGAACTGAAGTTAAAAAATAACTCATAAAAGTTTGACAATTTCAAAAGTTCGTCTA
323 ATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
*
4921 AGAACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
388 AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGC
*
4986 AAAATGACAAAC-------A--ATAT-A-G-G-----CC----A---AA---T-G----ATTGCT
453 AAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCT
** * * * * * * *
5019 CGAAGGAACGGATCGTCTTGAACAATTTAAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTG
518 CGAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTG
* * *
5084 ACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAATTCTCACGTAAATAACTTTTTAAT
583 ACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
5148 TC
647 TC
* * * * *
5150 AAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTCCCAAGCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
5215 GAAATATTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGATCTAAAGTTATG
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* *
5280 AAAGAATTAGTAAAAGTTTGACAACTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
131 AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * * *
5345 ACATAAATAAGTTTTTAATTCAACGACCAAAATTTGTTTGCAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * ** * * * *
5410 ATGATGCGATTTGCCGACCATGGAAAATTCGAAAATTTGCTTAAATGAATGGAT-TGTATTGAAT
261 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCT-TGTTGAAT
* * ** * * * * * * * *
5474 ACTTTAAGGATCCAAAGTTATAGAAGAACTAGTAAAAGGTTGACAAGTGCGGAAGTTAGTCCAAG
325 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
5539 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAA
390 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
* ** * * *
5604 AATGACAAAATATTTATTCCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCGCT
455 AATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCG
* * * * ** * *
5669 AAAAAATGGATCCTGTTGAATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGAC
520 AAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGAC
* *
5734 AAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
585 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** * * *
5798 AACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGACCAAATGATGTGATTTGCCGAGGAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * *
5863 GGAAAATTCGAAAAACTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGATCCCAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* *
5928 AAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGACAAACAATTCT
131 AAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * *
5992 CACATAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * * * *
6057 AATGATGCGATTTGCCGACCATGGAAAATTCGAAAATTTGCTTAAATGAATGGATCGTCTTGAAT
260 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAAT
* * ** * * * * * * *
6122 ACTTTAAGGATCCAAAGTTATAGAAGAACTAGTAAAAGGTTGACAAGTGCGGAAGTTCGTCCAAG
325 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
6187 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAA
390 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
* * * * * *
6252 AATGAAAAAATATTTATACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCGCT
455 AATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCG
* * * * ** * *
6317 AAAAAATGGATCCTGTTGAATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGAC
520 AAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGAC
* * *
6382 AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
585 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
6446 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCTATCAT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * ** *
6511 GGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* * * *
6576 AAATAACTCA-TAAAAGTTTTACAATTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
131 AAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* *
6640 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGGCCA
195 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * * * * *
6705 AATGATGCGATTTGCCGAGCATGGAAAATTCGGAAAATTGCTGAAATGAATGGATCGTCTTGAAT
260 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAAT
* * * ** * *
6770 ACATTAAGGATCCAAAGTT---ATA-AACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
325 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
*
6831 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAA
390 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
* ** * * * ** *
6896 AACGACAAACTATTTAGACCAAATGATACGATTTACCGAGCATGGAAAATTCGGAAAATTGC-CG
455 AATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCG
* * * *
6960 AAATGAATGGATCGTCTTGAATACATTAAGGATCCAAAGTT---ATA-AACTAGTAAAAGTTTGA
520 AAA-AAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGA
* *
7021 CAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
584 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
7086 AACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATTTACTGAGCTT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * * *
7151 GGAAAATTTGGAAAATTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* * * * * *
7216 AAAGAACTAATAAAAGGTTGTCAGGTTCGAAAGTTCGTCCAAGAATAAAGAGAGAAACAATTGTC
131 AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
7281 ACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * *
7346 GTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGTTGAAT
261 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCTTGTTGAAT
*
7410 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAG
325 ACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
7475 AACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTGCAA
390 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
* * * * * ** *
7539 AATGACAAATTATTTAGACCAAATAATGCGATTTCTCGACCATGGAATGTT-TAGAAAATTGCTC
455 AATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGA-AAAATTGCTC
* * * * * *
7603 GAAAGAATAGATCGTCATGAATAATTGAAGGATCCAAAGTTATAANNNNNNNNNNNNNNNNNNNN
519 GAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA-AA--------------------
*************************
7668 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
563 -----AAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
7733 TTCTCACGTAAATAAGTTTTTAATTC
623 TTCTCACGTAAATAAGTTTTTAATTC
* ** * * * * *
7759 AACGACCAAAACTTGTTTGCAAAGCGACAAACTATTTAGACCAAATGATACGATTTACTGAACTT
1 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * * * * * * *
7824 GGAAAATTTGGAAAATTGCTGAAATGAATGGATCGTCTTGATTATTTTAAGGTTCCAAAGTTATA
66 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
* * * * *
7889 AAAGAACTAGAAAAAGGTTGTCAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTGTC
131 AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
7954 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
196 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * * *
8019 GTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCACTAAA-AATATGGATCTTCTTGAA
261 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-AAAGGA-ATGGATCTTGTTGAA
* * * *
8083 TACTTTACGGTACTGGAGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAA
324 TACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * *
8148 GAACAAAGAGAAAAACAATTCTCACGT-AATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTGCA
389 GAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCA
* * * * * ** * *
8212 AAATGAAAAATTATTTAGACCAAATGATGCGATTTCTCGACCATGGAATGTT-TAGAAAATTACT
454 AAATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGA-AAAATTGCT
* * * * * *
8276 CGAAAGAATAGATCGTCATGAATAATTGAAGGATCCAAAGTTA
518 CGAAAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
8319 TAANNNNNNN
Statistics
Matches: 6791, Mismatches: 759, Indels: 207
0.88 0.10 0.03
Matches are distributed among these distances:
613 1 0.00
614 96 0.01
615 26 0.00
616 383 0.06
617 4 0.00
618 1 0.00
619 1 0.00
622 2 0.00
625 3 0.00
626 1 0.00
627 1 0.00
628 1 0.00
629 2 0.00
633 2 0.00
634 1 0.00
635 1 0.00
636 1 0.00
637 3 0.00
639 2 0.00
640 363 0.05
641 5 0.00
643 124 0.02
644 244 0.04
645 6 0.00
646 1089 0.16
647 1197 0.18
648 2618 0.39
649 12 0.00
673 358 0.05
674 243 0.04
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (648 bp):
AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATA
AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATA
CTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAA
ATGACAAACTATTTAGACCAAATGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCGA
AAAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTAGTAAAAGTTTGACA
AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
Found at i:5393 original size:216 final size:216
Alignment explanation
Indices: 5013--8321 Score: 3624
Period size: 216 Copynumber: 15.2 Consensus size: 216
5003 AGGCCAAATG
* * * * * *
5013 ATTGCTCGAAGGAACGGATCGTCTTGAACAATTTAAGTATCCAAAGTTATAAAAGAACTAGTAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * *
5078 AGTTTGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAATTCTCACGTAAATAACTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
5142 TTTAATTCAAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTACACCAAATGATGCGTTTTC
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
*
5207 CCAAGCAT-GAAATATTCGAAAA
195 CCGAGCATGGAAA-ATTCGAAAA
* * * * *
5229 ATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGATCTAAAGTTATGAAAGAATTAGTAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* *
5294 AGTTTGACAACTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
5359 TTAATTCAACGACCAAAATTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
*
5424 CGACCATGGAAAATTCGAAAA
196 CGAGCATGGAAAATTCGAAAA
* * * * *
5445 TTTGCTTAAATGAATGGATTGTATTGAATACTTTAAGGATCCAAAGTTATAGAAGAACTAGTAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * * *
5510 AGGTTGACAAGTGCGGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * ** * *
5575 TTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTATTCCAAGTGACGCGATTTCC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * **
5640 CAAGGATGGAATGTTCGAAAA
196 CGAGCATGGAAAATTCGAAAA
* * * * * * * ** * * *
5661 ATTGCGCTAAA-AAATGGATCCTGTTGAATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAA
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
* * *
5725 CAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** * *
5790 TTTAATTCAACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGACCAAATGATGTGATTTG
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
*
5855 CCGAGGATGGAAAATTCGAAAA
195 CCGAGCATGGAAAATTCGAAAA
* * *
5877 ACTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGATCCCAAGTTATAAAAGAA-TGAGTAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAA
* * *
5941 AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGACAAACAATTCTCACATAAATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
6006 TTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATGCGATTTG
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
*
6071 CCGACCATGGAAAATTCGAAAA
195 CCGAGCATGGAAAATTCGAAAA
* * *
6093 TTTGCTTAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAGAAGAACTAGTAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * *
6158 AGGTTGACAAGTGCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * *
6223 TTAATTGAAAGACCAAAACTTGTTTACAAAATGAAAAAATATTTATACCAAGTGACGCGATTTCC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * **
6288 CAAGGATGGAATGTTCGAAAA
196 CGAGCATGGAAAATTCGAAAA
* * * * * * * ** * * *
6309 ATTGCGCTAAA-AAATGGATCCTGTTGAATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAA
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
* * * *
6373 CAGTTTGACAAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
6438 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * **
6503 CCTATCATGGAATGTTCGAAAA
195 CCGAGCATGGAAAATTCGAAAA
* * * * * * ** * *
6525 ATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCA-TAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAA
* * *
6589 AAGTTTTACAATTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
6654 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGGCCAAATGATGCGATTTG
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
*
6719 CCGAGCATGGAAAATTCGGAAA
195 CCGAGCATGGAAAATTCGAAAA
* *
6741 ATTGCTGAAATGAATGGATCGTCTTGAATACATTAAGGATCCAAAGTTAT---A-AACTAGTAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
6802 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
6867 TTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATTTAC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
*
6932 CGAGCATGGAAAATTCGGAAA
196 CGAGCATGGAAAATTCGAAAA
*
6953 ATTGC-CGAAATGAATGGATCGTCTTGAATACATTAAGGATCCAAAGTTAT---A-AACTAGTAA
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
* *
7013 AAGTTTGACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
7078 TTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATTTA
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * *
7143 CTGAGCTTGGAAAATTTGGAAA
195 CCGAGCATGGAAAATTCGAAAA
* * *
7165 ATTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAATAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * * * * *
7230 AGGTTGTCAGGTTCGAAAGTTCGTCCAAGAATAAAGAGAGAAACAATTGTCACCTAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
7295 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * **
7360 CAAGGATGGAATGTTCGAAAA
196 CGAGCATGGAAAATTCGAAAA
* * * * * ** * * *
7381 ATTGCTCTAAA-AAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAA
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
*
7445 AAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTT
65 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
7509 TTTAATTTAAAGACCAAAAGTTGTTTGCAAAATGACAAATTATTTAGACCAAATAATGCGATTTC
130 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * ** *
7574 TCGACCATGGAATGTT-TAGAAA
195 CCGAGCATGGAAAATTCGA-AAA
* * * *
7596 ATTGCTCGAAA-GAATAGATCGTCATGAATAATTGAAGGATCCAAAGTTATAANNNNNNNNNNNN
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAA------------
********************************
7660 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAAAGTTCGTCCAAGAACAAAGAG
53 ------AAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTT--------CGTCCAAGAACAAAGAG
* **
7725 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAGCGACAAA
104 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAA
* * * * * * *
7790 CTATTTAGACCAAATGATACGATTTACTGAACTTGGAAAATTTGGAAA
169 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAATTCGAAAA
* * * * *
7838 ATTGCTGAAATGAATGGATCGTCTTGATTATTTTAAGGTTCCAAAGTTATAAAAGAACTAGAAAA
1 ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * * *
7903 AGGTTGTCAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTGTCACGTAAATAAGTTT
66 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
7968 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCC
131 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * **
8033 CAAGGATGGAATGTTCGAAAA
196 CGAGCATGGAAAATTCGAAAA
* * * * *** * * *
8054 ATTGCACTAAA-AATATGGATCTTCTTGAATACTTTACGG-TACTGGAGTTAAAAAATAACTCGT
1 ATTGCTC-AAATGA-ATGGATCGTCTTGAATACTTTAAGGAT-CCAAAGTTATAAAAGAACTAGT
* *
8117 AAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAAAAACAATTCTCACGT-AATAAG
63 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
8181 TTTTTAATTTAAAGACCAAAAGTTGTTTGCAAAATGAAAAATTATTTAGACCAAATGATGCGATT
128 TTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * ** *
8246 TCTCGACCATGGAATGTT-TAGAAA
193 TCCCGAGCATGGAAAATTCGA-AAA
* * * * *
8270 ATTACTCGAAA-GAATAGATCGTCATGAATAATTGAAGGATCCAAAGTTATAA
1 ATTGCTC-AAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAA
8322 NNNNNNNNNN
Statistics
Matches: 2604, Mismatches: 437, Indels: 105
0.83 0.14 0.03
Matches are distributed among these distances:
211 1 0.00
212 402 0.15
213 1 0.00
214 1 0.00
215 155 0.06
216 1779 0.68
217 106 0.04
224 2 0.00
233 2 0.00
241 37 0.01
242 118 0.05
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
ATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
CGAGCATGGAAAATTCGAAAA
Found at i:8872 original size:216 final size:215
Alignment explanation
Indices: 8493--9300 Score: 917
Period size: 216 Copynumber: 3.7 Consensus size: 215
8483 NNNNNNNNNN
8493 TAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
* * * * *
8558 ATGCGATTTCTCGAGCTTGAAAAATTCGGAAAATTGCT-GAAATGAATGGATCGTCTTGAATACT
66 ATGCGATTTC-CCAGCATGGAATATTCGAAAAATTGCTCGAAA-GAATGGATCGTCTTGAATACT
** * * *
8622 TTAAGG-TTTCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTTCGAAATTTTGTCCAAGAA
129 TTAAGGAACT-AAAGTTAAAAAAGAACTAGTAAAAGGTTGACAAGTTCGAAACTTCGTCCAAGAA
*
8686 CAAAGAGAGAATCAATTCTCACG
193 CAAAGAGAGAAACAATTCTCACG
* *
8709 TAAATAAGTTTTTAATTCAACGACCAGAAGTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
* * * * * *
8774 ATGCGATTTCCCATGGATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTGAATACTT
66 ATGCGATTTCCCA-GCATGGAATATTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTT
* * * *
8839 T-AGCGAACTGAAGTTAAAAAATAACTCGTAAAA-GTTCGACAAGTTCGAAAGTTCGTCCAAGAA
130 TAAG-GAACTAAAGTTAAAAAAGAACTAGTAAAAGGTT-GACAAGTTCGAAACTTCGTCCAAGAA
* *
8902 AAAAGAGGGAAACAATTCTCACG
193 CAAAGAGAGAAACAATTCTCACG
* * * * * *
8925 T-AATAAGTTTTTAGTTTAAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
* * * *
8989 GTGCGATTTCCCGAGCATGGAATAATC-AGCAAATTGCTCGAAAGAATAGATCGTCTTGAATACT
66 ATGCGATTTCCC-AGCATGGAATATTCGA-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACT
* * * * * *
9053 TTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAGGTTCGAAACTTCATCCAAGAAC
129 TTAAGGAACTAAAGTTAAAAAAGAACTAGTAAAAGGTTGACAAGTTCGAAACTTCGTCCAAGAAC
*
9118 AAAGAGAGAAACAATTCTCAAG
194 AAAGAGAGAAACAATTCTCACG
*
9140 TAAATAAGTTTTTAATTCAAAGGCCAAAACTTGCACCAAAACTTGTTTGCAAAATGACAAACTAT
1 TAAATAAGTTTTTAATT-------C--AAC--G-ACCAAAACTTGTTTGCAAAACGACAAACTAT
* * * * * *
9205 TTAGGCCAAATAATGCGATTTACCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCT
54 TTAGACCAAATGATGCGATTT-CCCAGCATGGAATATTCGAAAAATTGCTCGAAAGAATGGATCG
* * *
9270 TGTTGAATACTTTAGGGAACTGAAGTTAAAA
118 TCTTGAATACTTTAAGGAACTAAAGTTAAAA
9301 NNNNNNNNNN
Statistics
Matches: 492, Mismatches: 76, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
214 1 0.00
215 181 0.37
216 196 0.40
217 4 0.01
225 2 0.00
227 1 0.00
228 104 0.21
229 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
TAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATG
ATGCGATTTCCCAGCATGGAATATTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTT
AAGGAACTAAAGTTAAAAAAGAACTAGTAAAAGGTTGACAAGTTCGAAACTTCGTCCAAGAACAA
AGAGAGAAACAATTCTCACG
Done.