Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010928.1 Kokia drynarioides strain JFW-HI SEQ_125896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4269
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:1327 original size:29 final size:28

Alignment explanation


    Indices: 1277--1332  Score: 76
    Period size: 29  Copynumber: 2.0  Consensus size: 28

       1267 GTACTTATAC

                  *      *   *          
       1277 TTTTTATAATTTAGTCTTTATATTTTTA
          1 TTTTTAGAATTTAATCTATATATTTTTA

                                        
       1305 TTTTTAGATATTTAATCTATATATTTTT
          1 TTTTTAGA-ATTTAATCTATATATTTTT

       1333 CAAATTTATA


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  28    7  0.29
  29   17  0.71

ACGTcount: A:0.27, C:0.04, G:0.04, T:0.66


Consensus pattern (28 bp):   
TTTTTAGAATTTAATCTATATATTTTTA

Found at i:3438 original size:11 final size:12

Alignment explanation


    Indices: 3411--3442  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       3401 AAAAAGAAAA

                        
       3411 TAAAATCTAATT
          1 TAAAATCTAATT

                        
       3423 TAAAATCTAA-T
          1 TAAAATCTAATT

                      
       3434 TAAAA-CTAA
          1 TAAAATCTAA

       3443 ATCTACTCCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  10    4  0.20
  11    6  0.30
  12   10  0.50

ACGTcount: A:0.56, C:0.09, G:0.00, T:0.34


Consensus pattern (12 bp):   
TAAAATCTAATT
Done.