Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001093.1 Kokia drynarioides strain JFW-HI SEQ_112357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1282
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37


Found at i:512 original size:139 final size:139

Alignment explanation


    Indices: 353--960  Score: 990
    Period size: 139  Copynumber: 4.4  Consensus size: 139

        343 TCAATTCGCT

                                                                   *         
        353 TATCTCATCAGGAAGACGAATTTGGTTCACTTTTCAGTA-CCTCATCTGGAAGATCTGCTCGTTT
          1 TATCTCATCAGGAAGACGAATTTGGTTCACTTTTCAGTATCC-CATCTGGAAGATTTGCTCGTTT

                                            *                       *        
        417 CGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTTATCAGGAAGATGATCCCATCACTATTTCAATC
         65 CGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATC

            *         
        482 TGCTTCTCTG
        130 CGCTTCTCTG

                                            *                                
        492 TATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCCCATCTGGAAGATTTGCTCGTTTC
          1 TATCTCATCAGGAAGACGAATTTGGTTCACTTTTCAGTATCCCATCTGGAAGATTTGCTCGTTTC

                                     *                                       
        557 GAGCCTCGTTTGGGTCTTCTTCTCAATGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC
         66 GAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC

                     
        622 GCTTCTCTG
        131 GCTTCTCTG

                                                           * *               
        631 TAT-TACATCAGGAAGACGAATTTGGTTCACTTCTT-AGTATCCCATTTAGAAGATTTGCTCGTT
          1 TATCT-CATCAGGAAGACGAATTTGGTTCACTT-TTCAGTATCCCATCTGGAAGATTTGCTCGTT

                                                             *               
        694 TCGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCTCATCACTGTTTCAAT
         64 TCGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAAT

              *        
        759 CCACTTCTCTG
        129 CCGCTTCTCTG

               *                                                             
        770 TATTTCATCAGGAAGACGAATTTGGTTCACTTCTT-AGTATCCCATCTGGAAGATTTGCTCGTTT
          1 TATCTCATCAGGAAGACGAATTTGGTTCACTT-TTCAGTATCCCATCTGGAAGATTTGCTCGTTT

                   *        *                                           *    
        834 CGAGCCTTGTTTGGGTTTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTTAATC
         65 CGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATC

              *       
        899 CGTTTCTCTG
        130 CGCTTCTCTG

                                            *        *    *     
        909 TATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAG
          1 TATCTCATCAGGAAGACGAATTTGGTTCACTTTTCAGTATCCCATCTGGAAG

        961 CTAATTGTTT


Statistics
Matches: 440,  Mismatches: 24, Indels: 10
        0.93            0.05        0.02

Matches are distributed among these distances:
 138    2  0.00
 139  434  0.99
 140    4  0.01

ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37


Consensus pattern (139 bp):   
TATCTCATCAGGAAGACGAATTTGGTTCACTTTTCAGTATCCCATCTGGAAGATTTGCTCGTTTC
GAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC
GCTTCTCTG

Done.