genome.fa.s10932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010932.1 Kokia drynarioides strain JFW-HI SEQ_125900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176747

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7194--7267	37	2.0	40	81	10	93	50	5	10	33	1.60
10917--10959	17	2.5	17	96	0	77	32	0	2	65	1.06
12739--12854	30	3.9	29	82	9	128	34	28	2	34	1.71
12761--13095	59	5.7	59	80	7	315	34	25	3	35	1.75
12775--13026	30	8.6	29	67	10	127	37	25	3	34	1.72
12763--13060	29	10.1	29	70	15	141	35	25	3	34	1.74
13029--13120	29	3.1	29	67	14	71	29	22	6	41	1.79
13018--13213	59	3.3	59	79	4	200	30	23	7	38	1.83
13980--14010	16	1.9	16	93	0	53	25	9	6	58	1.54
17027--17091	30	2.2	30	85	0	85	44	6	13	35	1.69
17077--17395	59	5.4	59	78	9	296	34	4	25	35	1.76
17077--17364	30	9.8	29	75	14	227	33	4	25	36	1.76
17112--17393	30	9.6	28	75	13	153	34	4	24	36	1.76
17284--17386	28	3.6	28	79	11	120	39	4	19	35	1.73
19163--19239	17	4.5	17	81	0	91	57	7	1	33	1.36
19153--19239	34	2.6	34	83	0	102	55	6	1	36	1.34
26635--26684	16	2.8	18	79	17	59	38	0	2	60	1.09
26648--26691	15	2.9	15	80	12	54	38	0	0	61	0.96
26677--26746	32	2.2	33	82	7	81	45	2	0	51	1.16
26746--26796	16	3.2	16	73	15	61	50	0	0	49	1.00
26726--26777	22	2.3	22	86	3	68	50	0	0	50	1.00
27132--27194	27	2.3	26	78	13	65	7	19	19	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38570--39277	159	4.5	159	93	0	1172	26	16	24	31	1.97
38570--39277	317	2.2	318	92	1	1172	26	16	24	31	1.97
40905--40951	13	3.2	14	80	16	51	70	2	2	25	1.10
41397--41464	23	3.0	23	86	0	91	17	2	36	42	1.65
41839--41921	27	3.2	25	64	18	60	45	13	8	32	1.73
51543--51581	18	2.3	17	86	8	53	64	0	0	35	0.94
54541--54617	21	3.7	21	74	10	68	32	22	11	33	1.90
55290--55533	53	4.6	53	88	1	348	34	22	15	27	1.95
58382--58448	34	2.0	32	91	5	107	49	0	2	47	1.16
58380--58437	15	3.6	15	70	17	53	48	0	1	50	1.11
58470--58506	16	2.3	16	86	13	58	40	0	0	59	0.97
69539--69589	19	2.6	20	73	14	52	56	3	3	35	1.36
73371--73395	4	6.2	4	100	0	50	76	24	0	0	0.80
74409--74445	2	18.5	2	88	0	56	54	0	45	0	1.00
75456--75493	19	2.1	19	90	5	60	76	5	7	10	1.15
77426--77476	20	2.5	20	81	12	59	60	1	0	37	1.08
84301--85157	69	12.4	68	74	8	347	35	21	20	22	1.96
84260--85148	138	6.4	138	78	5	762	35	21	20	22	1.96
84256--85145	274	3.2	273	78	6	855	35	21	20	22	1.96
85200--85503	58	5.4	55	78	5	259	37	15	11	35	1.83
85200--85503	113	2.7	110	78	8	313	37	15	11	35	1.83
85200--85503	116	2.7	111	79	8	335	37	15	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85391--85567	58	3.1	58	79	5	155	35	19	10	35	1.86
87129--87157	13	2.1	14	93	6	51	51	0	27	20	1.47
100036--100072	2	18.5	2	100	0	74	48	0	0	51	1.00
103236--103315	42	1.9	42	84	5	108	26	6	12	55	1.61
110652--110699	22	2.2	22	88	7	71	14	25	12	47	1.79
114418--114466	22	2.3	22	89	3	73	38	12	6	42	1.67
115265--115302	20	1.9	20	94	0	67	42	7	18	31	1.79
115448--115493	24	2.0	24	86	4	67	67	2	19	10	1.31
125833--126046	79	2.7	78	81	5	216	44	12	11	31	1.77
127722--127750	14	2.1	14	100	0	58	44	13	0	41	1.44
128525--128563	21	1.9	19	90	10	60	46	20	0	33	1.51
129154--129186	16	2.1	16	100	0	66	30	18	6	45	1.73
135113--135142	9	3.2	9	90	9	51	40	0	0	60	0.97
135111--135155	19	2.3	20	81	11	58	37	2	0	60	1.09
142621--142665	22	2.1	22	87	4	65	37	2	2	57	1.23
142826--142876	15	3.5	15	81	5	68	35	13	1	49	1.54
143043--143083	15	2.5	18	77	22	54	7	31	0	60	1.24
145211--145244	18	1.9	17	88	5	50	23	2	2	70	1.15
145210--145268	25	2.4	24	81	13	59	20	3	5	71	1.20
145260--145311	17	2.9	17	75	16	52	26	5	0	67	1.13
149932--150048	62	1.9	59	86	5	162	41	1	5	51	1.34
151544--151615	36	2.0	36	100	0	144	30	13	22	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172426--172466	22	1.9	21	95	5	73	14	26	0	58	1.37
172442--172489	17	2.7	17	83	6	60	18	20	2	58	1.49
172736--172779	20	2.2	20	83	4	52	20	9	13	56	1.64
174059--174099	9	4.2	10	81	12	50	41	2	0	56	1.13

Tables:   1

The End!