Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010942.1 Kokia drynarioides strain JFW-HI SEQ_125910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:868 original size:23 final size:25

Alignment explanation


    Indices: 837--892  Score: 62
    Period size: 26  Copynumber: 2.3  Consensus size: 25

        827 CTTTGATAAC

                *            *     * 
        837 AGTTGTTAG-AAG-TCAGTTGTGTT
          1 AGTTATTAGTAAGCTCAATTGTGAT

                                      
        860 AGTTATTAGTTAAGCTCAATTGTGAT
          1 AGTTATTAG-TAAGCTCAATTGTGAT

                   
        886 AGTTATT
          1 AGTTATT

        893 GGAGTCTGTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  23    8  0.30
  25    3  0.11
  26   16  0.59

ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45


Consensus pattern (25 bp):   
AGTTATTAGTAAGCTCAATTGTGAT
Done.