genome.fa.s10943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010943.1 Kokia drynarioides strain JFW-HI SEQ_125911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71922

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332--409	17	4.6	17	76	9	70	47	3	1	47	1.28
315--358	23	1.9	23	86	9	63	47	2	0	50	1.13
331--409	34	2.3	34	84	0	95	48	3	1	46	1.28
1257--1688	49	8.6	48	67	16	200	16	26	20	37	1.93
1201--1688	98	4.9	99	83	6	601	17	25	20	37	1.93
7009--7057	24	2.0	24	96	0	89	36	20	18	24	1.94
13387--13660	59	4.7	58	79	8	245	36	4	27	31	1.77
13387--13778	29	13.3	29	70	15	200	37	3	25	32	1.74
13567--13787	59	3.7	59	84	1	246	39	2	22	34	1.69
13695--13800	30	3.6	29	76	8	97	36	1	23	37	1.66
14834--14916	13	6.5	13	80	6	73	36	3	1	59	1.23
15645--15679	12	3.0	12	87	4	54	45	0	0	54	0.99
20067--20103	3	12.3	3	100	0	74	64	0	35	0	0.94
21052--21103	18	3.0	18	81	10	56	51	0	1	46	1.12
21220--21292	29	2.4	30	84	4	85	49	13	12	24	1.77
48194--48353	87	1.8	86	82	6	207	39	19	13	28	1.89
49777--49857	34	2.4	34	89	6	119	29	13	1	55	1.46
52888--52920	16	2.0	17	94	5	59	54	6	0	39	1.25
53523--53567	17	2.6	17	89	3	63	46	2	4	46	1.35
55474--55690	29	7.4	29	70	18	137	30	27	4	37	1.76
55490--55653	59	2.8	60	85	6	223	31	25	3	40	1.73
55669--55742	29	2.6	28	81	10	80	29	29	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68528--68577	22	2.2	23	82	3	57	14	22	26	38	1.91
71102--71155	25	2.2	25	100	0	108	40	18	11	29	1.85

Tables:   1

The End!