genome.fa.s10944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010944.1 Kokia drynarioides strain JFW-HI SEQ_125912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113454

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270--314	15	3.1	15	87	9	58	80	0	20	0	0.72
270--322	25	2.1	25	85	3	70	77	0	22	0	0.77
1235--3001	98	18.1	98	80	3	1515	35	15	27	21	1.94
1239--3001	49	36.1	49	72	6	892	35	15	27	21	1.94
3295--3584	38	7.5	36	71	15	152	33	26	14	25	1.94
3344--3584	40	6.2	40	72	10	131	33	26	14	25	1.94
3295--3866	78	7.2	81	79	7	448	33	26	14	25	1.95
3358--3866	42	12.8	42	74	10	376	32	27	15	24	1.95
12566--12762	90	2.2	90	81	8	217	40	13	3	42	1.62
12910--12967	30	1.9	31	86	10	84	58	5	0	36	1.20
12910--12970	29	2.1	30	84	9	81	60	4	0	34	1.18
12888--12999	19	5.8	19	66	15	59	58	3	2	35	1.30
13196--13308	9	11.9	9	71	15	52	29	5	1	63	1.26
14533--14581	2	24.5	2	100	0	98	0	48	0	51	1.00
17695--17729	8	4.4	8	85	0	52	31	0	0	68	0.90
21099--21176	31	2.6	30	88	11	115	44	20	11	23	1.84
28535--28563	12	2.3	13	94	5	51	10	27	24	37	1.88
29349--29455	57	1.9	56	83	9	137	25	17	8	48	1.75
29696--29757	31	2.0	30	87	3	88	46	6	17	29	1.73
30748--30791	23	1.9	23	85	0	61	38	2	6	52	1.41
36938--37022	42	2.0	42	95	0	152	37	15	20	27	1.92
45017--45332	156	2.0	159	89	5	489	38	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47190--47215	12	2.2	12	100	0	52	26	23	34	15	1.94
52488--52535	21	2.3	21	92	7	80	35	27	10	27	1.89
55929--55971	18	2.3	20	80	15	56	72	2	9	16	1.21
57442--57500	30	2.0	30	100	0	118	54	6	13	25	1.64
58156--58241	28	3.0	28	94	3	154	20	6	19	52	1.69
60203--60281	25	3.2	25	85	1	97	44	13	30	11	1.80
60285--60374	22	4.1	22	95	0	153	37	26	23	12	1.90
66420--66494	25	3.0	25	84	9	100	46	14	26	12	1.79
66499--66543	22	2.0	22	95	0	81	42	26	22	8	1.83
67536--67580	19	2.4	19	81	7	56	37	0	4	57	1.19
69167--69212	17	2.6	17	86	3	65	71	2	10	15	1.23
70865--70956	43	2.1	43	97	0	175	34	11	17	35	1.87
72650--72700	21	2.4	21	84	12	61	49	1	0	49	1.12
75193--75254	11	5.3	11	73	21	54	58	1	1	38	1.18
75202--75239	17	2.2	17	90	0	58	57	0	2	39	1.12
75336--75375	19	2.1	19	86	9	55	32	2	5	60	1.32
77323--77413	43	2.1	43	93	0	155	34	25	14	26	1.94
77848--77877	2	15.0	2	100	0	60	50	0	0	50	1.00
89903--89974	34	2.1	34	97	0	135	18	23	27	30	1.97
90080--90809	244	3.0	244	99	0	1424	26	18	20	34	1.96
93104--93222	59	2.0	59	100	0	238	24	16	18	40	1.91
105023--105077	23	2.3	24	87	3	76	3	18	5	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108329--108383	24	2.3	23	87	9	76	1	16	5	76	1.06
110263--110303	18	2.3	17	84	12	55	12	12	4	70	1.31
110260--110303	19	2.3	20	84	7	65	13	11	4	70	1.31
112255--112305	23	2.3	23	86	10	70	1	17	1	78	0.94
112263--112302	6	6.8	6	82	5	55	2	15	0	82	0.77
112255--112302	12	4.1	12	82	15	55	2	16	2	79	0.93

Tables:   1

The End!