genome.fa.s10948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010948.1 Kokia drynarioides strain JFW-HI SEQ_125916, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50859

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1794--1955	29	5.5	29	63	11	87	33	1	13	50	1.52
1794--1976	59	3.1	58	93	3	312	32	1	12	53	1.49
1846--1942	29	3.2	31	69	19	96	32	2	15	49	1.56
1830--1987	30	5.3	30	67	19	107	34	1	10	53	1.44
1938--1987	16	3.2	16	71	21	52	38	0	4	58	1.17
2247--2289	21	2.1	21	86	4	61	58	13	2	25	1.48
2633--2673	9	4.8	9	77	22	52	0	41	0	58	0.98
2632--2666	18	1.9	18	100	0	70	0	42	0	57	0.99
2649--2712	4	16.2	4	80	15	62	0	29	0	70	0.88
2632--2712	25	3.2	25	77	11	76	0	32	0	67	0.91
2667--2723	11	4.9	11	81	12	60	1	24	0	73	0.92
3113--3141	15	1.9	15	100	0	58	31	27	13	27	1.94
14643--14741	23	4.3	23	79	2	110	29	20	18	32	1.96
20327--20385	22	2.7	21	78	17	66	40	13	1	44	1.54
20806--20836	2	15.5	2	100	0	62	51	0	0	48	1.00
23448--23511	9	7.0	9	75	12	51	62	3	0	34	1.11
23449--23510	20	3.3	20	72	20	55	62	3	0	33	1.11
26328--26377	23	2.2	23	100	0	100	46	8	16	30	1.75
27241--27294	21	2.6	21	82	5	56	38	3	7	50	1.48
27258--27301	21	2.2	20	88	8	63	38	2	6	52	1.41
32847--32903	28	2.0	28	89	0	87	77	5	1	15	1.03
36816--36850	18	1.9	18	94	0	61	31	0	8	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48146--48220	24	3.1	24	96	0	132	53	9	12	25	1.67
48306--48432	62	2.0	62	100	0	254	31	19	24	24	1.98

Tables:   1

The End!