genome.fa.s10961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010961.1 Kokia drynarioides strain JFW-HI SEQ_125929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121531

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7089--7170	29	2.8	28	80	7	83	37	17	8	36	1.80
19982--20040	21	2.8	21	71	0	64	28	10	27	33	1.89
20822--20863	11	3.5	12	80	9	50	2	21	0	76	0.90
20822--20863	6	7.0	6	78	10	50	2	21	0	76	0.90
20828--20863	17	2.2	17	90	9	58	2	22	0	75	0.94
20746--21555	401	2.0	404	94	1	1430	31	14	12	41	1.84
28920--28963	23	1.9	23	85	0	61	52	0	2	45	1.13
30297--30383	45	1.9	45	97	0	165	39	4	32	24	1.76
32578--32630	9	6.8	9	71	28	50	49	0	0	50	1.00
32535--32587	22	2.5	22	93	3	90	49	1	0	49	1.12
32556--32625	29	2.4	30	95	2	124	48	0	0	51	1.00
32587--32628	20	2.0	22	90	9	70	52	0	0	47	1.00
32578--32634	20	3.0	20	74	23	59	47	0	0	52	1.00
33087--33361	91	3.1	88	79	8	236	37	17	9	36	1.81
33126--33363	91	2.6	93	81	4	259	34	17	9	38	1.82
33468--33586	29	4.1	29	74	7	91	65	1	1	31	1.12
33527--33598	19	3.8	19	79	16	71	62	0	1	36	1.04
33468--33606	9	14.6	9	75	12	82	64	2	1	31	1.14
33515--33614	20	5.0	20	73	8	78	63	1	1	35	1.08
33789--33995	9	22.2	9	69	20	81	31	4	2	61	1.28
33893--33961	19	3.8	18	84	5	86	31	2	2	62	1.25
33882--33977	19	5.3	18	70	18	65	33	3	2	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34448--34487	20	2.0	20	85	9	55	42	0	0	57	0.98
34442--34486	24	1.9	23	90	4	72	44	0	0	55	0.99
35900--36106	30	6.9	30	87	0	261	35	1	23	39	1.64
35900--36121	90	2.5	91	85	4	308	35	1	25	37	1.67
36949--36987	15	2.4	16	91	8	62	30	0	5	64	1.15
37492--37544	26	2.1	25	92	3	88	13	5	37	43	1.67
37500--37541	12	3.3	12	81	12	57	14	2	40	42	1.58
37569--37615	17	2.8	17	90	3	69	55	4	0	40	1.19
38242--38552	39	8.0	39	70	8	202	23	19	31	25	1.98
38241--38449	78	2.7	78	82	3	233	24	18	31	24	1.98
38312--38760	117	3.8	118	79	4	471	24	19	32	24	1.97
38312--38760	78	5.8	77	79	6	386	24	19	32	24	1.97
38312--38758	39	11.5	39	74	4	292	24	19	32	23	1.98
39751--39829	40	2.0	40	82	2	95	15	25	15	44	1.85
50822--50962	30	4.7	30	89	0	185	31	3	29	35	1.75
50936--50982	20	2.3	21	81	7	60	31	4	25	38	1.75
51599--51633	10	3.4	10	88	7	52	5	45	28	20	1.73
52705--52730	5	5.2	5	100	0	52	61	0	0	38	0.96
55098--55260	81	2.0	81	100	0	326	36	12	15	34	1.85
59652--59680	3	9.7	3	100	0	58	68	0	31	0	0.89
73796--73835	19	2.0	21	85	9	57	25	15	2	57	1.50
75828--75860	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76437--76480	18	2.5	18	85	3	54	56	15	11	15	1.66
83744--83849	47	2.3	47	96	1	196	23	10	14	51	1.72
93250--93310	17	3.5	17	84	2	77	21	24	9	44	1.82
96685--96726	18	2.3	18	100	0	84	19	40	4	35	1.72
98006--98072	33	2.0	33	100	0	134	29	17	20	31	1.96
110922--110983	25	2.5	25	94	0	106	37	4	22	35	1.76
111232--111281	6	8.5	6	78	12	59	80	0	16	4	0.87
117907--117956	25	2.0	25	88	3	75	48	8	16	28	1.74
119495--119519	9	2.8	9	100	0	50	32	12	32	24	1.91
120499--120546	7	6.3	7	77	17	51	27	6	25	41	1.79
120499--120546	24	2.1	23	88	7	71	27	6	25	41	1.79
120811--120839	6	5.0	6	91	8	51	68	0	0	31	0.89

Tables:   1

The End!