Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010965.1 Kokia drynarioides strain JFW-HI SEQ_125933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110835
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:290 original size:156 final size:156
Alignment explanation
Indices: 1--303 Score: 417
Period size: 156 Copynumber: 1.9 Consensus size: 156
* * *
1 TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAG
1 TCTTGCACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAACTCCTTAAAG
* ** * * * ** ** *
66 TATTCAAGATGATCCATTCCTTCCAACAATTTTTTGAACATTCCATTCTCGTTAAATCGTATCAT
66 TATTAAAGACAATCCATTCCTTCCAACAATATTCTGAACATTCAACGCTCGCGAAATCGCATCAT
*
131 TTGGTTTAAATAGTTTGACATCTTGG
131 TTGGTCTAAATAGTTTGACATCTTGG
***
157 TCTTGCACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGCTCCTTAAAG
1 TCTTGCACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAACTCCTTAAAG
* * *
222 TATTAAAGACAATCCATTCCTTCGAGCAATATTCTGAACATTCAACGCTCGCGAAATCGCATCTT
66 TATTAAAGACAATCCATTCCTTCCAACAATATTCTGAACATTCAACGCTCGCGAAATCGCATCAT
287 TTGGTCTAAATAGTTTG
131 TTGGTCTAAATAGTTTG
304 TTATTATGTA
Statistics
Matches: 126, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
156 126 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (156 bp):
TCTTGCACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAACTCCTTAAAG
TATTAAAGACAATCCATTCCTTCCAACAATATTCTGAACATTCAACGCTCGCGAAATCGCATCAT
TTGGTCTAAATAGTTTGACATCTTGG
Found at i:842 original size:221 final size:220
Alignment explanation
Indices: 151--929 Score: 965
Period size: 216 Copynumber: 3.6 Consensus size: 220
141 TAGTTTGACA
* * * * * *
151 TCTTGG-TCTTGCACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGCTC
1 TCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * * *
215 CTTAAAGTATTAAAGACAATCCATTCCTTCGAGCAATATTCTGAACATTCAACGCTCGCGAAATC
66 CTTAAAGTATTCAAGACAATCCATTCCTTCTAGCAATTTTCCGAACATTCCATGCTCGGGAAATC
* *
280 GCATCTTTTGGTCTAAATAGTTTG--T-T-ATTATGTAAACAAGTTTTAG-TCTTTAAATTAAAA
131 GCATCTTTTGGTCTAAATAGTTTGTTTGTCATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAAA
* * * *
340 TCCTATTTACGTGAGAATTATTTCTC
195 ACTTATATACGTGAGAATTGTTTCTC
* * *
366 TCTTGGTTCTAGGACAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
1 TCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
431 CTTAAAGTATTCAAGACGATCCATTCCTT-TCAGCAATTTTCCTAACATTTCATGCTCGAGAAAT
66 CTTAAAGTATTCAAGACAATCCATTCCTTCT-AGCAATTTTCCGAACATTCCATGCTCGGGAAAT
*
495 CGCATCTTTTGGTCTAAATA----GTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAGA
130 CGCATCTTTTGGTCTAAATAGTTTGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
* *
556 ACTTATATATGTGAGAATTGTGTCTC
195 ACTTATATACGTGAGAATTGTTTCTC
*
582 TCTTGGTTCTTGGACAAACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
647 CTTAAA-CATTCAAGACAATCCATTCCTTCTAGCAATTTTCCAAACATTCCATGCTCGGGAAATC
66 CTTAAAGTATTCAAGACAATCCATTCCTTCTAGCAATTTTCCGAACATTCCATGCTCGGGAAATC
*
711 GCATCTTTTGGTCTAAATAGTTTGTTTTTGTCATTTTCTAAACAAGTTTTGTTCTTTGAATTAAA
131 GCATCTTTTGGTCTAAATAGTTTG--TTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAA
* *
776 AACTTATGTACGTGATAATTGTTTCTC
194 AACTTATATACGTGAGAATTGTTTCTC
* * * * **
803 TCTTGATTTTTGGACGAAC-TTCTGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTT
1 TCTTGGTTCTTGGACAAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* ** ** * *
867 CCTCT-GAGTATTCGTGATGATCCATTCCTTCAAGCAATTTTTCGAACATTTCCATGCTCGGGA
65 CCT-TAAAGTATTCAAGACAATCCATTCCTTCTAGCAATTTTCCGAACA-TTCCATGCTCGGGA
930 TATGATACGA
Statistics
Matches: 489, Mismatches: 57, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
212 1 0.00
214 1 0.00
215 78 0.16
216 239 0.49
219 1 0.00
220 3 0.01
221 119 0.24
222 33 0.07
223 14 0.03
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (220 bp):
TCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
CTTAAAGTATTCAAGACAATCCATTCCTTCTAGCAATTTTCCGAACATTCCATGCTCGGGAAATC
GCATCTTTTGGTCTAAATAGTTTGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAA
CTTATATACGTGAGAATTGTTTCTC
Found at i:6419 original size:21 final size:21
Alignment explanation
Indices: 6394--6435 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
6384 CTTTGCAATA
6394 TTTTTGGGTTTTCGAGATTCT
1 TTTTTGGGTTTTCGAGATTCT
*
6415 TTTTTGGGTTTTCGAGTTTCT
1 TTTTTGGGTTTTCGAGATTCT
6436 GCAATGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.10, G:0.24, T:0.60
Consensus pattern (21 bp):
TTTTTGGGTTTTCGAGATTCT
Found at i:8965 original size:23 final size:25
Alignment explanation
Indices: 8919--8965 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8909 ACAATTCTCT
*
8919 TTGAGTTTTTCTTCAAGAATTTGTC
1 TTGAGTTTTTCTTCAAGAAGTTGTC
*
8944 TTGAGTTTTT-TT-TAGAAGTTGT
1 TTGAGTTTTTCTTCAAGAAGTTGT
8966 TTTAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (25 bp):
TTGAGTTTTTCTTCAAGAAGTTGTC
Found at i:15165 original size:48 final size:48
Alignment explanation
Indices: 15048--15223 Score: 241
Period size: 48 Copynumber: 3.7 Consensus size: 48
15038 TTTATGCTTC
* * * * *
15048 ATTAAGTGTTTT-TTTGCTAAATGCATCTTTGTTTA-AAAACTGCATC
1 ATTAATTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATT
*
15094 ATT-ATGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGTATT
1 ATTAAT-TGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATT
*
15142 ATTAATTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATT
1 ATTAATTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATT
* *
15190 ATTAACTGTTTTGTTTGTTAAATACATCTTTGTT
1 ATTAATTGTTTTGTTTGTTAAATGCATCTTTGTT
15224 AAATGCATCA
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
45 1 0.01
46 9 0.08
47 22 0.19
48 82 0.71
49 2 0.02
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (48 bp):
ATTAATTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATT
Found at i:15223 original size:15 final size:15
Alignment explanation
Indices: 15203--15232 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15193 AACTGTTTTG
15203 TTTGTTAAATACATC
1 TTTGTTAAATACATC
*
15218 TTTGTTAAATGCATC
1 TTTGTTAAATACATC
15233 AACATCTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (15 bp):
TTTGTTAAATACATC
Found at i:16409 original size:216 final size:216
Alignment explanation
Indices: 15750--23463 Score: 8691
Period size: 216 Copynumber: 35.8 Consensus size: 216
15740 AGCTCATATG
* * *
15750 AACAAGTTTTGGTTTTTTAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
15815 AAGAACTTCTGAACTTGCCAAACTTTTACGAGTTCTTTTATAACTCTGGTTCCTCATAGTATTCG
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * *
15880 TGAAGATCCATTCCTTCAAGCAATATTT-CGAACATTCCATGCTCGGGATATCGCATCATTTGGT
131 AGACGATCCATTCCTTCCAGCAAT-TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
15944 CTAAATAGTTTGTTATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * *
15966 AACAAGCTTTGGTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTGCTCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * **
16031 ACGAACTTCTGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAACATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
** * * * * **
16095 AGATAATCCACTCCTTCCAGTAATTTTTCGAACATTTCATGCTTTGGAAATCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
*
16160 TAAAGAGTTTGTCATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * * * ** *
16181 AACAAATTTTGGTCTCTGAATTAAAAACTAATATACGCAAGAATTATTTCTCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * * *
16246 ACGAGCTTCTGAACTTGTCAAGCTTTTATGTGTTCTTTTTTAACTTTAGTTTCTAAAAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* ** * *
16311 AGACGATCCATTCTTTTGAGCAATTTTCCGAACATTCCATGCTCGGGATACCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
16376 TAAATA-TTTAGTCATTTTGTA
196 TAAATAGTTT-GTCATTTTGTA
* *
16397 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
16462 ACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * **
16527 AGAGGATCCATTCCTTCTAGCAATTTTTCGAACATTCCACGCTCGATAAATCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
16592 TAAATAGTTTTTAATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * *
16613 AACAAGTTTTGGT-TTGTGAATTAAAAACTTATATACGTGAGAATTGTTTATCTCTTGATTCTTG
1 AACAAGTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
** * * * * ** *
16677 GACGAACTTCCAAATTTGTTAAACTTTTACGAGTTCTTTAATAACTTCGAATCCTTATAGTATTC
65 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * *
16742 AAGACGATCCATTCCTTCCAAC-ATTGTTCCAAACATTCCATGCTCGGGAAATAGCACCATTTGG
130 AAGACGATCCATTCCTTCCAGCAATT-TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
16806 TCTAAATAATTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * * * * *
16829 AACAAGGTTTGGTCTTTTAATTAAAAACTTATATATGTGACAATTGTCTCTCTCTAGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * **
16894 ACGAACTTAC-GAACTTGTCAAACTTTTACAAGTACTTTTATAAATTCGATTCCTTAAAACATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* ** * * * * *
16958 ACGACGATCCATTCCTTCTGGCAGTTTTCGGAACATTCCATGCTCGTGAAATATG-ATCATTTGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAAT-CGCATCATTTGG
* *
17022 TCTAAATAGTTTTTCATTTTCTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * **
17045 AACAAGTTTTGGTCTTTGAAAT-AAAACTTATATACGTGAGAATTGTTTATCTCTTAATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * * * * *
17109 ATGAACTTAC-AAACCTGTCAAACTTTTACGAGTTCTTTTATACCTTCGATTTCATATAGTATTT
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * * * *
17173 AAGACGATCCTTTTCTTCCAACAATGTTCCAAACATTCCAAGCCCGGGAAATCGCATAATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
17238 CTAAATATTTTGTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * * * * *
17260 AACAAGGTTTGGTCTTTGAATTAAACACTTATATACATGACAATTGTTTCTCTCTTGGTACTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
17325 ATGAACTT-TCGAACTTGTCAGAA-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
66 ACGAACTTCT-GAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* *** * * *
17388 CAAGACGATCCATTCCTTCCATCAATTTTATTAACATTCCATGCTAGAGAAATCGTATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
17453 TATAAATAGTTTGTCATCTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * *
17476 AACAAGTTTTGGTTTTTGAATT-AAAACTTATTTACGTGAGAATTTTTTCTCACTTGGTTCTCGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
17540 ACGAACTTC-GAAACTAGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-
66 ACGAACTTCTG-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * * *
17603 AAGGATGTTCCATTCTTTCGAGCTATTTTCCGAACATTCCATGCTCGAGATATCGCATCATTTGG
130 AA-GACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
17668 CCTAAATAGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* *
17691 AACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGT-ATGAATTGTTTGTCTCTTGGTTCTTG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTG
* * *
17755 GACAAACTT-TCAAACTTGTCAAACTTTTACAAGTTCTTTTATAAC--T--TTCCTTAAAGTATT
65 GACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* *** * * * * * *
17815 CAAGATGATTTGTTCCTTCAAGCTATTTTACAAACATTCCATGCTCGAGATATCGCATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
17880 TCTAAATAGTTTGTCATTTTATA
194 TCTAAATAGTTTGTCATTTTGTA
* *
17903 AACAAGTTTTGGTCTTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTG
1 AACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
** * * ** *
17968 GACGAACTTCCAAACTTGTTAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAATTATTC
65 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* **
18033 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTTCATGCTCAAGAAATCGCATCATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
**
18098 CTAAATAGTTTGTCACATTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * *
18120 AA-ATAGTTTTGGTCTTTCAATTGATAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
1 AACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * **
18184 GATGAACTTCTGAACTTGTCAAAATTTTACAAGTTCATTTCTAACTTCGGTTCCTTAAAACATTC
65 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * *
18249 AAGATGATTCATTCCTTACAGCAATTTTTCGAACATTCTATGCTCGGGAAATCGTATCATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* *
18314 CTGAATAGTTTGTCATTTTGTG
195 CTAAATAGTTTGTCATTTTGTA
* * * * * * * *
18336 AACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACATGAGAAATGTTTATGTATTGATTTTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * * * *
18401 ATGAACCTAC-GAAATTATCAAACTCTTACGAGTTCTTTTATAACTTCGATTCCTTAGAGTATTT
66 ACGAA-CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * *
18465 AAGACGATCCATTCCATCCAGTAATTTTTCGAACATTCCATGCTCGAGAAATTGCATAATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
18530 CTAAGTAGTTTGTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
*
18552 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
18617 ATGAACTT-TCGAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGATTCCTGAAAGAATT-
66 ACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * *
18680 AAGATGATCCATTCCTTCGAGCAA-TTTCCTGAACATTTCATGCTCGCGAAATCGTAT-TTTTGG
130 AAGACGATCCATTCCTTCCAGCAATTTTCC-GAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
18743 TCCAAATTGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * *
18766 AACAAGGTTTGGTCTTTGAATTAAAATCCTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * *
18831 ATGAACTT-TCGAACTAGTAAAAGTTTTACGAGTTCTTTTATAACATTGGTTCCTTACAGTATTA
66 ACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * * * *
18895 AAGATC-ATCCATTCCTTCGAGCAATTTTTCGAACATTACAAGCTTGGGAAATCACATTATTTGA
130 AAGA-CGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
18959 TATAAATAATTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * * *
18982 AACAAGTTTTGGTCCTTGAAATAAAAACTTATTTGCATGAGAATTGTTTCTCTCTTGATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * *
19047 ACTAACTTATGAACTTGTCAAAATTTTACGAGTTCTTTTATAATTTTGATTCCTTATAGTTTTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * * *
19112 AGACGATGCATTCCTTCCAACAATGTTCCCAACATTCTATGCTTGGGAAATCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
19177 TAAATAGTTTGTCATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * * * * * *
19198 AACAAGGTTTGGTCTGTGAATTAAAAACTTATTTAAGTGAGAATTGTTTATCTCTTGATACCTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * *
19263 ACGAATTTATGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* ** * * * *
19328 AGACGATCCATTCTTTCCAAAAATTTTCCGAGCATTCCATGCACGTGAAATTGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
19393 TAAACAATTTTTCATTTGGTA
196 TAAATAGTTTGTCATTTTGTA
* * * * * **
19414 AACAAGTTTTGTTCATTGAGTTAAAAACTTATATACGTGAGAATTGTTTCACTCTTCATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * **
19479 ATGAACTTAC-GAACTCGTAAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAACATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * *
19543 AAGACGATCCATTCCTTCTAGCAA-TTTCATGAACATTCCATGCTCGGGAAATTGGATCATATGG
130 AAGACGATCCATTCCTTCCAGCAATTTTC-CGAACATTCCATGCTCGGGAAATCGCATCATTTGG
19607 TCTAAATAGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * *
19630 AACAAGTTTTGG--TTTGCAAATTAAAAACTTATTTACATGAGAATTGTTTATCTTTTGATTCTT
1 AACAAGTTTTGGTCTTTG--AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
19693 GGACGAACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATATCTTCGATTCCTTATAGTATT
64 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* ** * *
19758 CAAGACGATCCATTCCTTCCAACAATTTTTTGAACATTCCATGCTCGAGAAATTGCATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
19823 TCTAAATAGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * * * *
19846 AACAAGTGTTGGTCTTTGAATTAAAAACTTATTTACATTAGAATTCTTTCTCGCTTGGTTGTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
19911 ATGAACTTCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTCCCTTAAAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * **
19976 AGAGGATCCATTCCTTCTAGCAATTTTCCAAACATTCCACGCTCGATAAATCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
20041 TAAATAGTTTTTCATTTTCTA
196 TAAATAGTTTGTCATTTTGTA
* * * * *
20062 AACAAGTTTTGGT-TTGTGAATTAAAACCTTATATACATGAGAATTGTTTATCTCTTGATTCTTG
1 AACAAGTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
20126 GACAAACTT-TCAAACTTGTCAAACTTTTACGAGTTCTTTAATAACTTCGATTCCTTATAGTATT
65 GACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
20190 CAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATGCTCGGGAAATGGCATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * *
20255 TCTAAATAATTTGTTATTTTATA
194 TCTAAATAGTTTGTCATTTTGTA
* * * * * *
20278 AACAAGGTTTGGTCTTTGAAATAAAAACTTATATACGTGACAATTGTTTCTCCCTAGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * **
20343 ATGAACTTAC-GAACTTGTTAAACTTTTA-TAGGTACTTTTATAAATTCGGTTCCTTAAAACATT
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* ** * * * *
20406 CACGACGATCCATTCCTTCTGGCAATTTTTCGAACATTCCATGCTCGTGAAATTGAATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
20471 TCTAAATAGTTTTTCATTTTCTA
194 TCTAAATAGTTTGTCATTTTGTA
* * *
20494 AACAAGTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTATCTCTTGATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *** **
20559 ACGAACTTAC-AAACCTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTATTGTATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
** * * * * * *
20623 AAGACGATATATTCCTTCCAACAATGTTCCAAACATTCCAAGCTCGAGAAATCGCAACATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* *
20688 CTAAATATTTTTTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * * *
20710 AACAAGGTTTT-GT-TTTTAATTAAAAACTTATATACGTGACAATTGTTTCTCTCTTAGTTCTTG
1 AACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
20773 GACGAACTT-TCGAACTTGTCAAAATTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
65 GACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * ** * * *
20837 CAAGACGATTCATTCCTTCCATCAATTTTATGAACATTCCATGCTAGAGAAATCGTATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
20902 TCTAAATAGTTTGGCATTTTATA
194 TCTAAATAGTTTGTCATTTTGTA
*
20925 AACAAGTTTTGGTCTTTTAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* ** **
20988 ACGAACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * * *
21053 AGATGATCCATTCTTTCTAGCAATTTTTCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
21118 TAAATAGTTTGTCATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * *
21139 AA-ATAGTTTTGGTTTTTCAATTAATAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
1 AACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * **
21203 GACGAACTTCCGAACTTGTCTAAA-TTTTACAAGTTCATTTATAACTTCGGTTCCTTAAAACATT
65 GACGAACTTCTGAACTTGTC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * *
21267 CAAGATGATCCAGTCCTTCCAGCAAATTTT-CGAACATTCCATGCTCAGGAAATCGCATCATTTG
129 CAAGACGATCCATTCCTTCCAGC-AATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* *
21331 GTCTGAATAGTTTTTCATTTTGTA
193 GTCTAAATAGTTTGTCATTTTGTA
* * * * * *
21355 AACAAGTTTTGG-CTTGTGAATTAAAAACTTATTTATGTGAGAATTGTTTATGTATTGATTTTTG
1 AACAAGTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
21419 AACGAACCTAC-GAAATTATCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAGAGTATT
65 GACGAA-CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * * * * * *
21483 GAAGACGATCCATTCCATCCAGTAATTTTTCAAACATTCCATGCTCGAGAAATTGCATAATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
21548 TCTAAGTAGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* *
21571 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
21636 ATGAACTTCCGAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGGTTCCTAAAAGTATTAA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
** * * * ** * *
21701 AGGTGATTCATTCCTACGAGCAATTCCCCGAACATTCCATGCTCGCGAAATCGCAT-TTTTGGTC
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
*
21765 TAAATTGTTTGTCATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * * * *
21786 AACAAGGTTTGGTCTTTGAATTAAAATCCTATTTTCGTGAGAATTGTTTCTCCCTTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * ** * * * * *
21851 ATGAACTTTTGAACTACTAAAAGTTTTATGAGTTCTTTTATAACATTGGTTCCTTATAGTATTCA
66 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* ** * * * * * * *
21916 AGATGATCCATTCCTTCGGGCAATTTTCTGAACATTCCAAGCTTGGGAAATCACATTATTTGATA
131 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
21981 TAAACAATTTGTCATTTTGTA
196 TAAATAGTTTGTCATTTTGTA
* * *
22002 AACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * ** ** * *
22067 ACTAACTTAC-GAAGTTGCCAAACTTTTACGAGTTCTTTTATAGTTTTAATTCTTTATAGTATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * ** * * *
22131 AAGATGATCCATTCCTTCCAACAATGTTCCAAACATTTTATGTTTGGGAAATCGTATCA-TTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
22195 CTAAATAGTTTGTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * * * * *
22217 AACAAGTTTTGGT-TTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTATTTCTTGATACCTA
1 AACAAGTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
22281 GACGAACTTAC-AAACTTGTCAAGCTTTTATGAGTTCTTTTATAACTTCGATTCCTTATAGTATT
65 GACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * ** * * *
22345 CAAGGCGATCCATTCTTTCCAAAAATTTTCCGAGCATTCCATGCTCGTGAAATTGCATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
22410 TCTAAATAGTTTTTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
** * * *
22433 AACAAGTTTTATTCATTGAATTAAAAACTTATATACATGAGAATTG-TTCT-T-TTGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * **
22495 ACGAACTTAC-AAACTCGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * ** * *
22559 TAGACGATCCATTCCTTCTAGCAATTTTTTGAACATTCCATGCTCGGGAAATTGGATCATTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
22624 CTAAATAATTTGTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* * *
22646 AACAAGTTTTGG--TTTGCAAATTAAAAAATTATTTACGTGAGAATTGTTTATCTCTTGATTCTT
1 AACAAGTTTTGGTCTTTG--AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
22709 GGACGAACTTATGAACTCGTCAAACTTTTACGAGTTCTTTTATATCTTTGATTCCTTATAGTATT
64 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
22774 CAAGATGATCCATTCCTTCCAACAATTTTCCGAACATTCCATGCTTGGGAAATTGCATCATTTGG
129 CAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
22839 TCTAAATAGTTTGTCATTTTGTA
194 TCTAAATAGTTTGTCATTTTGTA
* * * ** *
22862 AACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATTAGAATTGTTTCTCGGTCGGTTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
22927 ACGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATGACTTTGGTTCCTTAAAGTATTA
66 ACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * ** * *
22991 AAGATGATCCATTCCTTCGAGCAATTTCCCGAACATTCCATGCTCGCTAAATTGCAT-TTTTGGT
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
23055 TTAAATAGTTTGTCATTTTGTA
195 CTAAATAGTTTGTCATTTTGTA
* ** *
23077 AACAAGGTTTT-GTCTTTGAATTAAAATCCCATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTG
1 AACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * * *
23141 GATGAACTTTTGAACTAGTAAAAGTTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAGTGTTT
65 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * * * *
23206 AAGACGATCCATTCCTTCGAGCAATGTT-CTACACATTCCAAGCT-TGGAACTTGCATCATTTGA
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGG
23269 TAC-AAATAGTTTGTCATTTTGTA
194 T-CTAAATAGTTTGTCATTTTGTA
* * **
23292 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTTAATTCTTGG
1 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
23357 ACGAACTTAC-GATCTTGTCAAACTTTTATGAGTTCTTTTATACCTTCGATTCCTTATAGTATTC
66 ACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* ** * * *
23421 AAGACAATCCATTCCTTCCAATAATGTTACAAACATTCCATGC
130 AAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGC
23464 CTTGGGACAA
Statistics
Matches: 6338, Mismatches: 1062, Indels: 197
0.83 0.14 0.03
Matches are distributed among these distances:
211 3 0.00
212 102 0.02
213 260 0.04
214 368 0.06
215 1521 0.24
216 3933 0.62
217 143 0.02
218 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
TAAATAGTTTGTCATTTTGTA
Found at i:19417 original size:19 final size:21
Alignment explanation
Indices: 19383--19423 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
19373 TGAAATTGCA
19383 TCATTTGGTCTAAACAA-TTTT
1 TCATTTGG-CTAAACAAGTTTT
19404 TCATTTGG-TAAACAAGTTTT
1 TCATTTGGCTAAACAAGTTTT
19424 GTTCATTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (21 bp):
TCATTTGGCTAAACAAGTTTT
Found at i:21133 original size:21 final size:20
Alignment explanation
Indices: 21108--21147 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
21098 AGAAATCGCA
*
21108 TCATTTGGTCTAAATAGTTTG
1 TCATTTGGT-AAAATAGTTTG
*
21129 TCATTTTGTAAAATAGTTT
1 TCATTTGGTAAAATAGTTT
21148 TGGTTTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (20 bp):
TCATTTGGTAAAATAGTTTG
Found at i:26467 original size:32 final size:32
Alignment explanation
Indices: 26431--26493 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
26421 GCCATCCATA
* *
26431 CATGTACCTAAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAGCTAATTG
*
26463 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTAAAACACATTAATCAGCTAATT
26494 AATTTCGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAGCTAATTG
Found at i:26582 original size:39 final size:38
Alignment explanation
Indices: 26539--26636 Score: 151
Period size: 38 Copynumber: 2.6 Consensus size: 38
26529 TTAATTTGTC
* *
26539 TCAAACTTAGACACCTTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAA-AACTATTAAATATGTA
* *
26578 TCAAAATAAGACATATTAAAAAAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAAAACTATTAAATATGTA
26616 TCAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
26637 CCCTATTTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 35 0.66
39 18 0.34
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (38 bp):
TCAAACTAAGACACATTAAAAAAACTATTAAATATGTA
Found at i:26621 original size:19 final size:19
Alignment explanation
Indices: 26562--26623 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
26552 CCTTAAAAAC
26562 AACTATTAAATATGTATCA
1 AACTATTAAATATGTATCA
* ** * **
26581 AAATAAGACATAT-TAAAAA
1 AACTATTAAATATGT-ATCA
26600 AACTATTAAATATGTATCA
1 AACTATTAAATATGTATCA
26619 AACTA
1 AACTA
26624 AGACACATTA
Statistics
Matches: 29, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.31
Consensus pattern (19 bp):
AACTATTAAATATGTATCA
Found at i:29136 original size:216 final size:215
Alignment explanation
Indices: 28700--29741 Score: 976
Period size: 216 Copynumber: 4.8 Consensus size: 215
28690 GTAGAAACTT
* * * * * *
28700 TTTTGTCTTTGAAATACAAACTTATTTACGTGAG-ATTTTTTCTATCTT-TTTCTTGGACGAACT
1 TTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28763 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGACTGCTTA-AAGTATTCAAGACGA
66 TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCG-GTCCTTAGAA-TATTCAAGATGA
** * ** * * * * * **
28827 TCTTTTCCTTCAAGAAATTTTTTGGACATTCCATGCTCCGAAAATCGCATCATTTGGTTTAAATA
129 TCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTGGAAATCACATCATTTGGTCAAAATA
* *
28892 GTTTGTCATTTTGTAAACAACT
194 GTTTTTCATTTTGTAAACAACA
* ** * *
28914 TTTTGTCTTT-AAGTTAAAAACTTATCTATGTGAGAATTGTTTCTCTCTTGGTTTTTTGACGAAC
1 TTTTGTCTTTGAA-TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
28978 TTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGGTCCTGAGAATTTTCAAGATGA
65 TTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTC-GGTCCTTAGAATATTCAAGATGA
** * ** * *
29043 TCCATTCCTTAAACAAATTTTTCGAACATTCCATGCTCTGGAAATTGCATCGTTTGGTCTATAA-
129 TCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTGGAAATCACATCATTTGGTC-AAAAT
*
29107 AGTTTTTGATTTTGTAAACAACA
193 AGTTTTTCATTTTGTAAACAACA
* * * * *
29130 TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTG-TT-TCTATTGCTTCTAGGATGAACT
1 TTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
29193 TTCGAACTTGTCAAACATTTACGAGTCCTTTTATAGCTTCAGTTCCTTTGAATATTCAAGATGAT
66 TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTC-GGTCCTTAGAATATTCAAGATGAT
* * * * ** *
29258 CCTTTCCTTCGACCAATTTTCCTAACTTTCCATTTTC-GAGGAATCACATCATTTGGTCAAAATA
130 CCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTG-GAAATCACATCATTTGGTCAAAATA
* * *
29322 GTTTTTAATTTTGTTAACAACT
194 GTTTTTCATTTTGTAAACAACA
* * *
29344 TTTTGGTCTTTGAATTAAAAACTTATTTACATCAGAATTCTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTT-GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
29409 TTTCCAACTTGTCAGACATTTATA-AATTCTTTTTTAACTTCGATTCCTTTGAGTATTCAAGATG
65 TTTCAAACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCG-GTCCTTAGAATATTCAAGATG
* * *
29473 ATCCATTCCTTCGACCAA-TTTTCTAAACCTTCCATTCT-TGGGAAATCACATCATTTGGTCAAA
128 ATCCATTCCTTCGACCAATTTTTC-GAACATTCCATGCTCT-GGAAATCACATCATTTGGTCAAA
*
29536 ATAGTTTTTCATTTTGTTAACAA-A
191 ATAGTTTTTCATTTTGTAAACAACA
*** * * **
29560 GTTTAT-TCTTTGAATTAAAGTTTTATTTACATGAGAATCGTTTCTCTCTTGATTCTTACACGAA
1 -TTT-TGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * * **
29624 CTTTCAAACTTGTCAGACATTTATGAGTTCTTTTATAAGTTCGGTTCCTGACAATATTTAAGACA
64 CTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGG-TCCTTAGAATATTCAAGATG
* * ** *
29689 ATCCATTCCTTCGACCAATTTTTCGATCATTTCATGCTCAAGAAATCGCATCA
128 ATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTGGAAATCACATCA
29742 ATAGTTTGTC
Statistics
Matches: 681, Mismatches: 124, Indels: 44
0.80 0.15 0.05
Matches are distributed among these distances:
213 6 0.01
214 166 0.24
215 46 0.07
216 304 0.45
217 157 0.23
218 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (215 bp):
TTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTCCTTAGAATATTCAAGATGATC
CATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTGGAAATCACATCATTTGGTCAAAATAGT
TTTTCATTTTGTAAACAACA
Found at i:29572 original size:431 final size:430
Alignment explanation
Indices: 28700--30610 Score: 1343
Period size: 431 Copynumber: 4.5 Consensus size: 430
28690 GTAGAAACTT
* * * * * ** *
28700 TTTTGTCTTTGAAATACAAACTTATTTACGTGAG-ATTTTTTCTATCTTTTTCTTGGACGAACTT
1 TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTAT-TGATTCTAGGACGAACTT
* * * * *
28764 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGACTGC-TTAAAGTATTCAAGACGA
65 TCGAACTTGTCAAACATTTACGAGTTCTTTTATAGCTTCAG-TTCCTTTAAA-TATTCAAGACGA
* * ** * * * **
28827 TCTTTTCCTTCAAGAAATTTTTTGGACATTCCATGCTCCGAAAATCGCATCATTTGGTTTAAATA
128 TCCTTTCCTTCGACCAATTTTCTGAACATTCCATGCTCCGAAAATCACATCATTTGGTCAAAATA
* ** * *
28892 GTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAGTTAAAAACTTATCTATGTGAGAATTGTTTC
193 GTTTGTAATTTTGTAAACAACTTTTTGTCTTTAAGTTAAAAACTTATCTACATCAGAATTCTTTC
* * *
28957 TCTCTTGGTTTTTTGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGG
258 TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAATTCTTTTATAACTTCAGG
* *
29022 TCCTGAGAATTTTCAAGATGATCCATTCCTTAAACAAATTTTTCGAACATTCCATGCTCTGGAAA
323 TCCTGAGAATATTCAAGATGATCCATTCCTTAAACAAATTTTTCAAACATTCCATGCTCTGGAAA
** * * *
29087 TTGCATCGTTTGGTCTATAAAGTTTTTGATTTTGTAAACAACA
388 TCACATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACA
* *
29130 TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTATTGCTTCTAGGATGAACTTT
1 TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTATTGATTCTAGGACGAACTTT
* * *
29195 CGAACTTGTCAAACATTTACGAGTCCTTTTATAGCTTCAGTTCCTTTGAATATTCAAGATGATCC
66 CGAACTTGTCAAACATTTACGAGTTCTTTTATAGCTTCAGTTCCTTTAAATATTCAAGACGATCC
* * * *
29260 TTTCCTTCGACCAATTTTCCT-AACTTTCCAT-TTTCGAGGAATCACATCATTTGGTCAAAATAG
131 TTTCCTTCGACCAATTTT-CTGAACATTCCATGCTCCGA-AAATCACATCATTTGGTCAAAATAG
* * *
29323 TTTTTAATTTTGTTAACAACTTTTTGGTCTTTGAA-TTAAAAACTTATTTACATCAGAATTCTTT
194 TTTGTAATTTTGTAAACAACTTTTT-GTCTTT-AAGTTAAAAACTTATCTACATCAGAATTCTTT
* * *
29387 CTCTCTTGGTTCTTGGATGAACTTTCC-AACTTGTCAGACATTTATA-AATTCTTTTTTAACTTC
257 CTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAACATTTA-AGAATTCTTTTATAACTTC
* ** * ** * * *
29450 -GATTCCTTTGAGTATTCAAGATGATCCATTCCTTCGACCAA-TTTTCTAAACCTTCCATTCT-T
320 AG-GTCCTGAGAATATTCAAGATGATCCATTCCTTAAACAAATTTTTC-AAACATTCCATGCTCT
*
29512 GGGAAATCACATCATTTGGTC-AAAATAGTTTTTCATTTTGTTAACAA-A
383 -GGAAATCACATCATTTGGTCTAAAA-AGTTTTTCATTTTGTAAACAACA
** * * *
29560 GTTTAT-TCTTTGAATTAAAGTTTTATTTACATGAGAATCGTTTCTCTCTTGATTCTTA-CACGA
1 -TTT-TGTCTTTGAATTAAAAATTTATTTACATGAGAATTG-TT-TCTATTGATTC-TAGGACGA
* * * * * *
29623 ACTTTCAAACTTGTCAGACATTTATGAGTTCTTTTATAAG-TTCGGTTCC-TGACAATATTTAAG
61 ACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTAT-AGCTTCAGTTCCTTTA-AATATTCAAG
* * * * *
29686 ACAATCCATTCCTTCGACCAATTTT-TCGATCATTTCATGCT-C-AAGA--A-ATC-----G-CA
124 ACGATCCTTTCCTTCGACCAATTTTCT-GAACATTCCATGCTCCGAAAATCACATCATTTGGTCA
* * * *
29739 TCAATAGTTTGTCA-TTT-TAAAAAAATCTTTTG-------G-T----A--T-T-TA-A-----A
188 -AAATAGTTTGTAATTTTGTAAACAACT-TTTTGTCTTTAAGTTAAAAACTTATCTACATCAGAA
* * * * * *
29780 TTGTATCTCTCTTTGTTCTTGGACAAACTTCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATA
251 TTCTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAA-GAATTCTTTTATA
* * * * ** * * * * * * *
29844 ACTTC-GGTTCCT-TGAATATTTAAGACGACCCATTCCTTCGACCAATTTTCCGAACCTTTCGTT
315 ACTTCAGG-TCCTGAGAATATTCAAGATGATCCATTCCTTAAACAAATTTTTCAAACATTCCATG
* * * *
29907 CTCGGGAAATCACATCATTTGGTC-AAAATAATTTTTTATTTTGTTAACAAC-
379 CTCTGGAAATCACATCATTTGGTCTAAAA-AGTTTTTCATTTTGTAAACAACA
* * * * * * *
29958 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
1 TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTG-TT-TCTATTGATTCTAGGACGAACT
* *** * * * *
30023 TTCCAACTTGTTTGACACTTATG-GATTCTTTTAT-GACTTCGGTTCCTTTGAATATTCAAGACG
64 TTCGAACTTGTCAAACATTTACGAG-TTCTTTTATAG-CTTCAGTTCCTTTAAATATTCAAGACG
* * * * * * ** *
30086 ATCCATTCCTTCAACTAAATTTCTGAACCTTCCATTCTTGGGAAATCACATCATTTGGTCAAAAT
127 ATCCTTTCCTTCGACCAATTTTCTGAACATTCCATGCTCCGAAAATCACATCATTTGGTCAAAAT
* * * * * * * * *
30151 AGTTTTTCATTTTGTTAACAACGTTTAGTCTTTGAA-TTAAAATCTTATTTACGTGAGAA-TCGT
192 AGTTTGTAATTTTGTAAACAACTTTTTGTCTTT-AAGTTAAAAACTTATCTACATCAGAATTC-T
*** * *
30214 TTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAGACATTTAAGAGTTCTTTTATAACTTC
255 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAATTCTTTTATAACTTC
* * * * * *
30279 TA-TTCTTGAGAATATTCAAGACGATCCATTCCTTTGACCAAA-TTTTCGAACATTCCATGCTC-
320 -AGGTCCTGAGAATATTCAAGATGATCCATTCC-TTAAACAAATTTTTCAAACATTCCATGCTCT
* * * * *
30341 GAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTATAAA-AATC-
383 G-GAAATCACATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAA-CA
* * * * * *
30389 TTTTGGTCTTTGAATTAAAAACTTT-TGTACGTGGGAATTGTCTCTCT-TTTAGTTCTTGGATGA
1 TTTT-GTCTTTGAATTAAAAA-TTTATTTACATGAGAATTGT-T-TCTATTGA-TTCTAGGACGA
* ** * *
30452 ACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATTCAAGAT
61 ACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAGCTTCAGTTCCTTTAAATATTCAAGAC
* * * * * * ** * *
30517 GACCCATTCCTTCAACCAACCTTTC-GAACCTTCCATTCTTGGGAAATCACGTCATTTGGTCAAA
126 GATCCTTTCCTTCGACCAA-TTTTCTGAACATTCCATGCTCCGAAAATCACATCATTTGGTCAAA
* * * *
30581 ATAGTTTTTCATTTTCTTAACAACTTTTTG
190 ATAGTTTGTAATTTTGTAAACAACTTTTTG
30611 GTCAATGATT
Statistics
Matches: 1188, Mismatches: 201, Indels: 182
0.76 0.13 0.12
Matches are distributed among these distances:
395 1 0.00
396 2 0.00
397 130 0.11
398 93 0.08
399 62 0.05
401 1 0.00
402 3 0.00
404 1 0.00
405 2 0.00
406 1 0.00
407 13 0.01
408 9 0.01
409 6 0.01
413 1 0.00
416 1 0.00
421 7 0.01
422 10 0.01
423 12 0.01
424 2 0.00
428 3 0.00
429 6 0.01
430 233 0.20
431 287 0.24
432 198 0.17
433 99 0.08
434 5 0.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (430 bp):
TTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTATTGATTCTAGGACGAACTTT
CGAACTTGTCAAACATTTACGAGTTCTTTTATAGCTTCAGTTCCTTTAAATATTCAAGACGATCC
TTTCCTTCGACCAATTTTCTGAACATTCCATGCTCCGAAAATCACATCATTTGGTCAAAATAGTT
TGTAATTTTGTAAACAACTTTTTGTCTTTAAGTTAAAAACTTATCTACATCAGAATTCTTTCTCT
CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAATTCTTTTATAACTTCAGGTCC
TGAGAATATTCAAGATGATCCATTCCTTAAACAAATTTTTCAAACATTCCATGCTCTGGAAATCA
CATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACA
Found at i:30165 original size:215 final size:216
Alignment explanation
Indices: 29778--30644 Score: 1041
Period size: 216 Copynumber: 4.0 Consensus size: 216
29768 TTGGTATTTA
* * *
29778 AATTGTATCTCTCTTTGTTCTTGGACAAAC-TTCCGAACTTGTCAAACATTAACGAGTTCTTTTA
1 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCC-AACTTGTCAAACATTTACGAGTTCTTTTA
* * * * * *
29842 TAACTTCGGTTCC-TTGAATATTTAAGACGACCCATTCCTTCGACCAATTTTCCGAACCTTTCGT
65 TAACTTCGGTTCCTTTGAATATTCAAGACGACCCATTCCTTCAACCAAATTTCTGAACCTTCCAT
* *
29906 TCTCGGGAAATCACATCATTTGGTCAAAATAATTTTTTATTTTGTTAACAAC-TTTGGTCTTTGA
130 TCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGA
29970 ATTAAAAACTTATTTACGTGAG
195 ATTAAAAACTTATTTACGTGAG
*** * *
29992 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCCAACTTGTTTGACACTTATG-GATTCTTTTA
1 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCCAACTTGTCAAACATTTACGAG-TTCTTTTA
* * *
30056 TGACTTCGGTTCCTTTGAATATTCAAGACGATCCATTCCTTCAACTAAATTTCTGAACCTTCCAT
65 TAACTTCGGTTCCTTTGAATATTCAAGACGACCCATTCCTTCAACCAAATTTCTGAACCTTCCAT
* * *
30121 TCTTGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACGTTTAGTCTTTGA
130 TCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGA
*
30186 ATTAAAATCTTATTTACGTGAG
195 ATTAAAAACTTATTTACGTGAG
* * ** * *
30208 AATCGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAGACATTTAAGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTAT
** * * ** *
30273 AACTTCTATT-CTTGAGAATATTCAAGACGATCCATTCCTTTGACCAAATTT-TCGAACATTCCA
66 AACTTCGGTTCCTT-TGAATATTCAAGACGACCCATTCCTTCAACCAAATTTCT-GAACCTTCCA
* * * * * * * *
30336 TGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTT-ATAAAAATCTTTTGGTCTTT
129 TTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAA-CTTTTGGTCTTT
*
30400 GAATTAAAAACTT-TTGTACGTGGG
193 GAATTAAAAACTTATT-TACGTGAG
* * * ** *
30424 AATTGTCTCTCTTTTAGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTAT
* * *
30489 AACTTTGGTTCCTTTGAATATTCAAGATGACCCATTCCTTCAACCAACCTTTC-GAACCTTCCAT
66 AACTTCGGTTCCTTTGAATATTCAAGACGACCCATTCCTTCAACCAA-ATTTCTGAACCTTCCAT
* * * **
30553 TCTTGGGAAATCACGTCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAACTTTTTGGTCAATG
130 TCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAAC-TTTTGGTCTTTG
* **
30618 ATTTAAAAACTTATGCACGTGAG
194 AATTAAAAACTTATTTACGTGAG
30641 AATT
1 AATT
30645 ATTTTTTCTC
Statistics
Matches: 553, Mismatches: 85, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
213 1 0.00
214 61 0.11
215 107 0.19
216 340 0.61
217 43 0.08
218 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (216 bp):
AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTAT
AACTTCGGTTCCTTTGAATATTCAAGACGACCCATTCCTTCAACCAAATTTCTGAACCTTCCATT
CTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAA
TTAAAAACTTATTTACGTGAG
Found at i:31429 original size:216 final size:215
Alignment explanation
Indices: 30707--32686 Score: 1992
Period size: 216 Copynumber: 9.2 Consensus size: 215
30697 TTCAACACAA
* * * * *
30707 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACCTGAGAATT-TTTCTATCTT--T
1 TTGTTAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * ** * *
30769 TCTTGGATGAACTTTCGAACATGTCACACTTTTACGAGTTCTTTTATAACTTCGACTGC-TTAAA
65 TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
* ** * * * * *
30833 GTATTCAAGACT-ATCTATTCCTTCGAGAAATTTTTTGAACATTCCATGCTCGGGAAATCGCATC
130 -TATTCAAGA-TGATCCATTCCTTCGACCAA-TTTTCGAACCTTCCATTCTCGAGAAATCACATC
** *
30897 ATTTGGTTTAAATAGTTTGTCATT
192 ATTTGGTCAAAATAGTTTTTCATT
* * * * * * *
30921 TTGTAAACAACTTTTTGTCTTTGAGTTACAAACTTATCTACGTGACAATTATTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * * * **
30986 CTTTGACGAACTTCCGAACTTGTAAAATATTTACGAGTTGTTTTATAACTTCAGCTCCTGAGAAT
66 CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
** * * * * * *
31051 ATTCAAGATGATCCATTCCTTAAACCAATTTTCAAACATTCCATGCTCTG-GAAATCGCAGC-GT
131 ATTCAAGATGATCCATTCCTTCGACCAATTTTCGAACCTTCCATTCTC-GAGAAATCACATCATT
* *
31114 TGGTCTATAA-AGTTTTTGATT
195 TGGTC-AAAATAGTTTTTCATT
* * * * * * * *
31135 TTGTAAACAACATTTT-GTCTTCGAATTAAAAATTTATTTACATGAGAATTGTTTCTATATCGAT
1 TTGTTAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* *
31199 TCTAGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
65 TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
* ** * * *
31264 TAATCAAGATGATCTTTTCCTTCGACCAATTTTCCTAAGCTTCCATTTTCGAGAAATCACATCAT
130 TATTCAAGATGATCCATTCCTTCGACCAATTTT-CGAACCTTCCATTCTCGAGAAATCACATCAT
*
31329 TTGGTCAAAATAGTTTTTAATT
194 TTGGTCAAAATAGTTTTTCATT
31351 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * *
31416 CTTGGACGAACTTTCGAACTTGTCAGACATTTATGAATTCTTTTTTAACCTCGGTTCGTTTGAAT
66 CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
*
31481 ATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACCTTCCATTCTCGGGAAATCACATCATT
131 ATTCAAGATGATCCATTCCTTCGACCAA-TTTTCGAACCTTCCATTCTCGAGAAATCACATCA-T
31546 TTGGTCAAAATAGTTTTTCATT
194 TTGGTCAAAATAGTTTTTCATT
* * * * * * *
31568 TTGTTAACAACGTTTAGTCTATGAATTAAAATCTTATTTAAGTGAGAATCGTTTCTCCCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * ***
31633 CTTGGACGAACTTTCGGACTTGTCAGACATTTACGAGTTCTTTTATAACTTTGGTTCCTAACAAT
66 CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
** * * * * *
31698 ATTCAAGACAATCCAATCCTTCGACCAATTTTCCGAACATTCCATGCTCGAAAAATCGCATCATT
131 ATTCAAGATGATCCATTCCTTCGACCAATTTT-CGAACCTTCCATTCTCGAGAAATCACATCATT
** * *
31763 TGGTTTAAATAGTTTGTCATC
195 TGGTCAAAATAGTTTTTCATT
* * * * * * * *
31784 TT-ATAAAAATCTTTTGGTCTTTAAATTAAAAACTT-TTATATGTGGGAATTGTATATCTCTTTG
1 TTGTTAACAA-CTTTTGGTCTTTGAATTAAAAACTTATT-TACGTGAGAATTGTTTCTCTCTTGG
* * ** *
31847 TTCTTGGACAAACTTTCAAACTTGAAAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGA
64 TTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGA
* * * * * * *
31912 ATATTTAAGACGACCCATTCCTTCGACTAATTTTTTGAACCTTCCATTCTTGAGAAATTACATCA
129 ATATTCAAGATGATCCATTCCTTCGACCAA-TTTTCGAACCTTCCATTCTCGAGAAATCACATCA
* * *
31977 TTTGGTTAGAATAGTTTTTTATT
193 TTTGGTCAAAATAGTTTTTCATT
32000 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * * * * * *
32065 CTTAGATGAACTTTCCAACTTTTCAGACATTTATGAATCCTTTTATAACATCGGTTTCTTTGAAT
66 CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
* * *
32130 ATTCAAGATGATCCATTCCTTC-AGCCAATATTCCAAACCTTCCATTCTCGGGAAATCACATCAT
131 ATTCAAGATGATCCATTCCTTCGA-CCAAT-TTTCGAACCTTCCATTCTCGAGAAATCACATCAT
* * *
32194 TTTGTCAAAATTGTTTTCCATT
194 TTGGTCAAAATAGTTTTTCATT
* * * **
32216 TTGTTAACAACGTTTAGTCTTTGAATTAAAATCTTATTTACGTGAGAATCATTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * **
32281 CTTGGGCGAACTTTCAAACTTGTTAGACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAAT
66 CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
* * * * ** *
32346 ATTCAAGACGATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCAAGAGAAATCGCATCATT
131 ATTCAAGATGATCCATTCCTTCGACCAATTTT-CGAACCTTCCATTCTCGAGAAATCACATCATT
* *
32411 TGGTCTAAATAGTTTCTCATT
195 TGGTCAAAATAGTTTTTCATT
* * * * *
32432 TT-ATAAAAATATTTTGGTCTTTG-ATTAAAAAC----TT---T--GAATTGTATCTCTCTTAGT
1 TTGTTAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * * * **
32486 TCCTGGATGAACTTTCGAATTTGCCAAACATTTACGAGTTCATTAATAACTTCGACTCCTTTGAA
65 TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
* * * * *
32551 TATTCAAGACGACCCATTCCTTCGACCAACTTTTCGAACCTTTCGTTCTCGA-AAATCACGTCAT
130 TATTCAAGATGATCCATTCCTTCGACCAA-TTTTCGAACCTTCCATTCTCGAGAAATCACATCAT
*
32615 TTGGTCAAATTAGTTTTTCATT
194 TTGGTCAAAATAGTTTTTCATT
* ** * *
32637 TTCTTAACAACTTTTGGTCCATGAATTAAAAATTTATTCACGTGAGAATT
1 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
32687 ATTTTTTCTC
Statistics
Matches: 1450, Mismatches: 278, Indels: 75
0.80 0.15 0.04
Matches are distributed among these distances:
205 41 0.03
206 118 0.08
207 4 0.00
208 1 0.00
210 1 0.00
211 2 0.00
213 36 0.02
214 164 0.11
215 91 0.06
216 789 0.54
217 203 0.14
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (215 bp):
TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAAT
ATTCAAGATGATCCATTCCTTCGACCAATTTTCGAACCTTCCATTCTCGAGAAATCACATCATTT
GGTCAAAATAGTTTTTCATT
Found at i:33144 original size:216 final size:216
Alignment explanation
Indices: 32752--34709 Score: 1994
Period size: 216 Copynumber: 9.2 Consensus size: 216
32742 AACACAACTA
* * * * * * **
32752 TAAACAACTTTTTTGTCTTTGAATTACAAACTTAGTTACATGAGAATTTTTTCTATCTTTTTTCT
1 TAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCT
* * ** *
32817 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGACTGCTTA-AAGTA
65 TGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAA-TA
* ** * * * *
32881 TTCAAGACGATCTATTCCTTCAAGAAATTTTTTGAATATTTCATGCTCGGGAAATCGCATCATTT
129 TTCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTT
** * *
32946 GGTTTAAATAATTTGTCATTTTG
194 GGTCAAAATAGTTTTTCATTTTG
* * * * *
32969 TAAACAACTTTTTGTCCTTGAGTTAAAAACTTATCTACGTGAGAACTGTTTCTCTCTTGATTCTT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT
** * * * * * *
33034 CAACAAACTTTCGAACTTGTCAAACCTTTACGAGCTCTTTTATAACTTCGGCTCCTGAGAGTATT
66 GGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATATT
* * * * * * ** *
33099 CAAGATGATCTAGTACTTAAACCAATTTTTCGAACATTCCATGCTCTGGAAATGGCATCGTTTGG
131 CAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGG
* *
33164 TCTATAA-AGTTTTTAATTTTG
196 TC-AAAATAGTTTTTCATTTTG
* * *
33185 TAAACAAC---T--T-TTTG---T-----C---TTTACATGAGAATTG-TT-TCTATTGATTCTA
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT
* *
33231 GGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATT
66 GGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATATT
* * ** * * * ** *
33296 CAAGATGATCCTTTCCTTTGACCAATTTTCCTAACTTTCCATTTTCGAGAAATCACATCATTTGG
131 CAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGG
*
33361 TCAAAATAGTTTTTAATTTTG
196 TCAAAATAGTTTTTCATTTTG
* * *
33382 TTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTTTTTCTCTCTT-AGTTCT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGA-TTCT
* * * * * * *
33446 TGGATGAACTTTCTAACTTGTCAGACATTTATGAATTCTTTTATAACTTCGGTTCCTTAGAGTAA
65 TGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATAT
* * *
33511 TCAAGACGATCAATTCCTTCGACCAATTTTTCGAACATTCCATTCTCGGGAAATCACATCATTTG
130 TCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTG
33576 GTCAAAATAGTTTTTCATTTTG
195 GTCAAAATAGTTTTTCATTTTG
* * * ** ** *
33598 TTAACAACGTTTAGTCTTCAAATTAAAGTCTTATTTACGTGAGAATCGTTTCTCTCTTGATTCTT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT
** * * *
33663 GGACGAACTTTCGAACTTGTCAGTCATTTACGAGTTCTTTTATAACTTCGATTCCTAACAATATT
66 GGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATATT
* ** ** * *
33728 TAAGACGATCCATTCCTTTGACCAATTTTTC-AATCATTTTATGCTCGAGAAATCGCATCATTTG
131 CAAGACGATCCATTCCTTCAACCAATTTTTCGAA-CATTCCATGCTCGGGAAATCACATCATTTG
* * *
33792 GTCTAAATAGTTTGTCATTTTA
195 GTCAAAATAGTTTTTCATTTTG
* * *
33814 TAAA-AATCTTTTGGTATTT-AAGTTAAAAACTT-TATTACGTGGGAATTGTATCTCTCTTTG-T
1 TAAACAA-CTTTTGGTCTTTGAA-TTAAAAACTTAT-TTACGTGAGAATTGTTTCTCTC-TTGAT
* * *
33875 TCTTGGACAAACTTTCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
62 TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAA
* * * * * * *
33940 TATTTAAGACGACCCATTCCTTCAACCAATTTTCCGAACCTTCTATTCTCGAGAAATCACATCAT
127 TATTCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCAT
* *
34005 TTGGTCAAAATAATTTTTTATTTTG
192 TTGGTCAAAATAGTTTTTCATTTTG
*
34030 TAAACAAC-TTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATT-TGTTCTCTCTTGGTTCT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGATTCT
* * * * * * *
34092 TGGCCGAACTTTCCAACTTGTCAGACATTTATGAATTCTTTTATAACTTTGGTTCCTTTGAATAT
65 TGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATAT
* * *
34157 TCAAGACGATCCATTCCTTCAACCAATTTTTC-AAAACTTCCATTCTTGGGAAATCACATCATTT
130 TCAAGACGATCCATTCCTTCAACCAATTTTTCGAACA-TTCCATGCTCGGGAAATCACATCATTT
34221 GGTCAAAATAGTTTTTCATTTTG
194 GGTCAAAATAGTTTTTCATTTTG
* * * * * * *
34244 TTAACAA-TGTTTAGTCTTTGAATTAAAATCTTATTTACATGAGAATCGTTTCTTTCTTGGTTCT
1 TAAACAACT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCT
* * * *
34308 TGGATGAACTTTCGAACTTGTCAGACATTTATGAGTTCTTTTATAACTTTGGTT-CTTGAGAATA
65 TGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT-AGAATA
* * ** *
34372 TTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTT
129 TTCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTT
* *
34437 GGTCTAAATAGTTTGTCATTTT-
194 GGTCAAAATAGTTTTTCATTTTG
* * * * * *
34459 AAAAAAATCTTTTGGTCTTTGAATTAAAAACTTTTTTACTTGGGAATTGTATCTCTCTTTG-TTC
1 TAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGATTC
* * * * * *
34523 TTGGACAAACTTTTGTACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTTGAATA
64 TTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATA
* ** * * *
34588 TTCAAAACGA-CCTATTCCTTTTACCAACTTTTCGAACCTTCCGTTG-TCGGGAAATCACATCAT
129 TTCAAGACGATCC-ATTCCTTCAACCAATTTTTCGAACATTCC-ATGCTCGGGAAATCACATCAT
*
34651 TTGGTCAAAATAGTTTTTCATTTTC
192 TTGGTCAAAATAGTTTTTCATTTTG
* * *
34676 TTAACAACTTTTGGTCCTTG-GTATAAAAACTTAT
1 TAAACAACTTTTGGTCTTTGAAT-TAAAAACTTAT
34710 GCATGTGAGA
Statistics
Matches: 1454, Mismatches: 237, Indels: 101
0.81 0.13 0.06
Matches are distributed among these distances:
196 3 0.00
197 138 0.09
198 2 0.00
199 12 0.01
200 1 0.00
202 2 0.00
203 4 0.00
206 1 0.00
207 1 0.00
210 3 0.00
211 2 0.00
213 7 0.00
214 178 0.12
215 46 0.03
216 1018 0.70
217 36 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (216 bp):
TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT
GGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAATATT
CAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGG
TCAAAATAGTTTTTCATTTTG
Found at i:34184 original size:646 final size:647
Alignment explanation
Indices: 33236--34709 Score: 2247
Period size: 646 Copynumber: 2.3 Consensus size: 647
33226 TTCTAGGATG
33236 AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGA
1 AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGA
* * * * * * *
33301 TGATCCTTTCCTTTGACCAATTTTCCTAACTTTCCATTTTCGAGAAATCACATCATTTGGTCAAA
66 CGACCCATTCCTTTAACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACATCATTTGGTCAAA
*
33366 ATAGTTTTTAATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTTT
131 ATAGTTTTTAATTTTGTTAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACGTAAGAATTTG
* *
33431 TTCTCTCTTAGTTCTTGGATGAACTTTCTAACTTGTCAGACATTTATGAATTCTTTTATAACTTC
195 TTCTCTCTTAGTTCTTGGACGAACTTTCCAACTTGTCAGACATTTATGAATTCTTTTATAACTTC
* * *
33496 GGTTCCTTAGAGTAATCAAGACGATCAATTCCTTCGACCAATTTTTC-GAACATTCCATTCTCGG
260 GGTTCCTTAGAATAATCAAGACGATCAATTCCTTCAACCAATTTTTCAAAAC-TTCCATTCTCGG
33560 GAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACGTTTAGTCTTCAAATTAAA
324 GAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACGTTTAGTCTTCAAATTAAA
* * *
33625 GTCTTATTTACGTGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAGTCAT
389 ATCTTATTTACATGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAGACAT
* *
33690 TTACGAGTTCTTTTATAACTTCGATTCCTAACAATATTTAAGACGATCCATTCCTTTGACCAATT
454 TTACGAGTTCTTTTATAACTTCGATTCCTAACAATATTCAAGACGATCCATTCCTTCGACCAATT
** * *
33755 TTTC-AATCATTTTATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAAA
519 TTTCGAA-CATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTAAAAAA
33819 ATCTTTTGGTATTT-AAGTTAAAAACTTTATTACGTGGGAATTGTATCTCTCTTTGTTCTTGGAC
583 ATCTTTTGGTATTTGAA-TTAAAAACTTTATTACGTGGGAATTGTATCTCTCTTTGTTCTTGGAC
33883 A
647 A
* *
33884 AACTTTCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTTAAGA
1 AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGA
* *
33949 CGACCCATTCCTTCAACCAATTTTCCGAACCTTCTATTCTCGAGAAATCACATCATTTGGTCAAA
66 CGACCCATTCCTTTAACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACATCATTTGGTCAAA
* * * *
34014 ATAATTTTTTATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTTGT
131 ATAGTTTTTAATTTTGTTAACAACTTTTGGTCTTTGAATTAAAACTTATTTACGTAAGAATTTGT
* * *
34078 TCTCTCTTGGTTCTTGGCCGAACTTTCCAACTTGTCAGACATTTATGAATTCTTTTATAACTTTG
196 TCTCTCTTAGTTCTTGGACGAACTTTCCAACTTGTCAGACATTTATGAATTCTTTTATAACTTCG
* * * *
34143 GTTCCTTTGAATATTCAAGACGATCCATTCCTTCAACCAATTTTTCAAAACTTCCATTCTTGGGA
261 GTTCCTTAGAATAATCAAGACGATCAATTCCTTCAACCAATTTTTCAAAACTTCCATTCTCGGGA
* **
34208 AATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAATGTTTAGTCTTTGAATTAAAAT
326 AATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACGTTTAGTCTTCAAATTAAAAT
* * *
34273 CTTATTTACATGAGAATCGTTTCTTTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAGACATTT
391 CTTATTTACATGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAGACATTT
* * * * * * *
34338 ATGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGATGATCCATTCCTTCGACCAATTTT
456 ACGAGTTCTTTTATAACTTCGATTCCTAACAATATTCAAGACGATCCATTCCTTCGACCAATTTT
34403 TCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTAAAAAAATC
521 TCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTAAAAAAATC
* * *
34468 TTTTGGTCTTTGAATTAAAAACTTTTTTACTTGGGAATTGTATCTCTCTTTGTTCTTGGACA
586 TTTTGGTATTTGAATTAAAAACTTTATTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACA
* * * * *
34530 AACTTTTGTACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTTGAATATTCAAAA
1 AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGA
* * * * *
34595 CGACCTATTCCTTTTACCAACTTTT-CGAACCTTCCGTTGTCGGGAAATCACATCATTTGGTCAA
66 CGACCCATTCCTTTAACCAA-TTTTCCGAACCTTCCATTCTCGAGAAATCACATCATTTGGTCAA
* * * * *
34659 AATAGTTTTTCATTTTCTTAACAACTTTTGGTCCTTGGTATAAAAACTTAT
130 AATAGTTTTTAATTTTGTTAACAACTTTTGGT-CTTTGAATTAAAACTTAT
34710 GCATGTGAGA
Statistics
Matches: 746, Mismatches: 74, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
646 559 0.75
647 32 0.04
648 155 0.21
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (647 bp):
AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGA
CGACCCATTCCTTTAACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACATCATTTGGTCAAA
ATAGTTTTTAATTTTGTTAACAACTTTTGGTCTTTGAATTAAAACTTATTTACGTAAGAATTTGT
TCTCTCTTAGTTCTTGGACGAACTTTCCAACTTGTCAGACATTTATGAATTCTTTTATAACTTCG
GTTCCTTAGAATAATCAAGACGATCAATTCCTTCAACCAATTTTTCAAAACTTCCATTCTCGGGA
AATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACGTTTAGTCTTCAAATTAAAAT
CTTATTTACATGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAGACATTT
ACGAGTTCTTTTATAACTTCGATTCCTAACAATATTCAAGACGATCCATTCCTTCGACCAATTTT
TCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTAAAAAAATC
TTTTGGTATTTGAATTAAAAACTTTATTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACA
Found at i:34438 original size:862 final size:844
Alignment explanation
Indices: 32773--34709 Score: 2234
Period size: 862 Copynumber: 2.3 Consensus size: 844
32763 TTTGTCTTTG
* * * ** * * *
32773 AATTACAAACTTAGTTACATGAGAATTTTTTCTATCTTTTTTCTTGGACGAACTTTCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATCGTATCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGT
* * * * * * *
32838 CAAACTTTTACGAGTTCTTTTATAACTTTGACTGCTTAAAGTATTCAAGACGATCTATTCCTTCA
66 CAAACATTTACGAGTTCTTTTATAACTTCGA-TTCCTAAAATATTCAAGACGATCCATTCCTTTA
** * * * *
32903 AGAAATTTTTTGAAT-ATTTCATGCTCGGGAAATCGCATCATTTGGTTTAAATAATTTGTCATTT
130 ACCAA-TTTTTCAATCATTTTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
32967 TGTAAACAACTTTTTGTCCTTGAGTTAAAAACTTATCTACGTGAGAACTGTTTCTCTCTTGATTC
194 TATAAACAACTTTTGGTACTTAAGTTAAAAACTTATCTACGTGAGAACTGTATCTCTCTTGATTC
* * *
33032 TTCAACAAACTTTCGAACTTGTCAAACCTTTACGAGCTCTTTTATAACTTCGGCTCCTGAGAGTA
259 TTCAACAAACTTTCGAACTTGTCAAACATTAACGAGCTCTTTTATAACTTCGGCTCCTGAGAATA
* * * * ** *
33097 TTCAAGATGATCTAGTACTTAAACCAATTTTTCGAACATTCCATGCTCTGGAAATGGCATCGTTT
324 TTCAAGACGACCCAGTACTTAAACCAATTTTCCGAACATTCCATGCTCTGGAAATCACATCATTT
* *
33162 GGTCTATAAAGTTTTTAATTTTGTAAACAACTTTTTGTCTTTACATGAGAATTGTTTCTATTGAT
389 GGTCTAAAAAATTTTTAATTTTGTAAACAACTTTTTGTCTTTACATGAGAATTGTTTCTATTGAT
* * *
33227 TCTAGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
454 TCTAGGACGAACTTTCCAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTCCTTTGAA
* * ** **
33292 TATTCAAGATGATCCTTTCCTTTGACCAATTTTCCTAACTTTCCATTTTCGAGAAATCACATCAT
519 TATTCAAGACGATCCATTCCTTCAACCAATTTTCAAAACTTTCCATTTTCGAGAAATCACATCAT
* *
33357 TTGGTCAAAATAGTTTTTAATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
584 TTGGTCAAAATAGTTTTTAATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACAT
** *
33422 AAGAATTTTTTCTCTCTTAGTTCTTGGATGAACTTTCTAACTTGTCAGACATTTATGAATTCTTT
649 AAGAATCGTTTCTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTCAGACATTTATGAATTCTTT
*
33487 TATAACTTCGGTTCCTTAGAGTAATCAAGACGATCAATTCCTTCGACCAATTTTTCGAACATTCC
714 TATAACTTCGGTTCCTTAGAATAATCAAGACGATCAATTCCTTCGACCAATTTTTCGAACATTCC
* ** * ** *
33552 ATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAA-CGTTTAGTCTT
779 ATGCTCAAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT-AAAAAAATCGTTTAGTCTT
33616 CA
843 CA
** *
33618 AATTAAAGTCTTATTTACGTGAGAATCGTTTCTCTC-TTGATTCTTGGACGAACTTTCGAACTTG
1 AATTAAAAACTTATTTACGTGAGAATCGTATCTCTCTTTG-TTCTTGGACGAACTTTCGAACTTG
** *
33682 TCAGTCATTTACGAGTTCTTTTATAACTTCGATTCCTAACAATATTTAAGACGATCCATTCCTTT
65 TCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTAA-AATATTCAAGACGATCCATTCCTTT
* *
33747 GACCAATTTTTCAATCATTTTATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
129 AACCAATTTTTCAATCATTTTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
33812 TATAAA-AATCTTTTGGTATTTAAGTTAAAAACTTTAT-TACGTGGGAATTGTATCTCTCTTTG-
194 TATAAACAA-CTTTTGGTACTTAAGTTAAAAAC-TTATCTACGTGAGAACTGTATCTCTC-TTGA
** * * **
33874 TTCTTGGACAAACTTTCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTCGGTTCCTTTGA
256 TTCTTCAACAAACTTTCGAACTTGTCAAACATTAACGAGCTCTTTTATAACTTCGGCTCCTGAGA
* * * * * * *
33939 ATATTTAAGACGACCCATTCCTTCAACCAATTTTCCGAACCTTCTATTCTC-GAGAAATCACATC
321 ATATTCAAGACGACCCAGTACTTAAACCAATTTTCCGAACATTCCATGCTCTG-GAAATCACATC
* *
34003 ATTTGGTC-AAAATAATTTTTTATTTTGTAAACAACTTTGGTCTTTGAATTAAAACTTATTTACG
385 ATTTGGTCTAAAA-AATTTTTAATTTTGTAAACAAC--T--T-TTTG---T----C---TTTACA
* * * * * *
34067 TGAGAATTTGTTCTCTCTTGGTTCTTGGCCGAACTTTCCAACTTGTCAGACATTTATGAATTCTT
434 TGAGAA-TTGTT-TCTATTGATTCTAGGACGAACTTTCCAACTTGTCAAACATTTACGAATTCTT
*
34132 TTATAACTTTGGTTCCTTTGAATATTCAAGACGATCCATTCCTTCAACCAATTTTTCAAAAC-TT
497 TTATAACTTCGGTTCCTTTGAATATTCAAGACGATCCATTCCTTCAACCAA-TTTTCAAAACTTT
* *
34196 CCATTCTT-GGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAA-TGTTTAGT
561 CCATT-TTCGAGAAATCACATCATTTGGTCAAAATAGTTTTTAATTTTGTTAACAACT-TTTAGT
* * * *
34259 CTTTGAATTAAAATCTTATTTACATGAGAATCGTTTCTTTCTTGGTTCTTGGATGAACTTTCGAA
624 CTTTGAATTAAAAACTTATTTACATAAGAATCGTTTCTCTCTTAGTTCTTGGATGAACTTTCGAA
* * * * *
34324 CTTGTCAGACATTTATGAGTTCTTTTATAACTTTGGTT-CTTGAGAATATTCAAGATGATCCATT
689 CTTGTCAGACATTTATGAATTCTTTTATAACTTCGGTTCCTT-AGAATAATCAAGACGATCAATT
* *
34388 CCTTCGACCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGT
753 CCTTCGACCAATTTTTCGAACATTCCATGCTCAAGAAATCACATCATTTGGTCAAAATAGTTTGT
* * **
34453 CATTTTAAAAAAATCTTTTGGTCTTTG
818 CATTTTAAAAAAATCGTTTAGTCTTCA
* * * * * * * *
34480 AATTAAAAACTTTTTTACTTGGGAATTGTATCTCTCTTTGTTCTTGGACAAACTTTTGTACTAGT
1 AATTAAAAACTTATTTACGTGAGAATCGTATCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGT
** *
34545 CAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTTGAATATTCAAAACGA-CCTATTCCTTT
66 CAAACATTTACGAGTTCTTTTATAACTTCGATTCC-TAAAATATTCAAGACGATCC-ATTCCTTT
* * * * * * *
34609 TACCAACTTTTCGAA-CCTTCCGT-TG-TCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCA
129 AACCAATTTTTC-AATCATT--TTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * *
34671 TTTTCTTAACAACTTTTGGTCCTT-GGTATAAAAACTTAT
191 TTTTATAAACAACTTTTGGTACTTAAGT-TAAAAACTTAT
34710 GCATGTGAGA
Statistics
Matches: 916, Mismatches: 138, Indels: 60
0.82 0.12 0.05
Matches are distributed among these distances:
844 21 0.02
845 323 0.35
846 7 0.01
847 1 0.00
849 1 0.00
850 4 0.00
853 1 0.00
857 1 0.00
860 11 0.01
861 21 0.02
862 504 0.55
863 20 0.02
864 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (844 bp):
AATTAAAAACTTATTTACGTGAGAATCGTATCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGT
CAAACATTTACGAGTTCTTTTATAACTTCGATTCCTAAAATATTCAAGACGATCCATTCCTTTAA
CCAATTTTTCAATCATTTTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTA
TAAACAACTTTTGGTACTTAAGTTAAAAACTTATCTACGTGAGAACTGTATCTCTCTTGATTCTT
CAACAAACTTTCGAACTTGTCAAACATTAACGAGCTCTTTTATAACTTCGGCTCCTGAGAATATT
CAAGACGACCCAGTACTTAAACCAATTTTCCGAACATTCCATGCTCTGGAAATCACATCATTTGG
TCTAAAAAATTTTTAATTTTGTAAACAACTTTTTGTCTTTACATGAGAATTGTTTCTATTGATTC
TAGGACGAACTTTCCAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTCCTTTGAATA
TTCAAGACGATCCATTCCTTCAACCAATTTTCAAAACTTTCCATTTTCGAGAAATCACATCATTT
GGTCAAAATAGTTTTTAATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATAA
GAATCGTTTCTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTCAGACATTTATGAATTCTTTTA
TAACTTCGGTTCCTTAGAATAATCAAGACGATCAATTCCTTCGACCAATTTTTCGAACATTCCAT
GCTCAAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTAAAAAAATCGTTTAGTCTTCA
Found at i:35107 original size:216 final size:214
Alignment explanation
Indices: 34785--35916 Score: 978
Period size: 216 Copynumber: 5.3 Consensus size: 214
34775 TTCAACACAA
* * * * *
34785 TTGTAAACAACTTTTTTGTCTCTGAATTACAAACTTATTTGCGTGAGAATT-TTT-TCTATT-TT
1 TTGTAAACAAC-TTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * * *
34847 TCTCGGATGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTCCGACTGCTTAAA
65 TCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCT-CCTAAA
** * * *
34911 GTATTCAAGACGATCTTTTCCTTCGA-GAATTTTTTTGGACATTCCATGCTCAGGAAATCGCATC
128 GTATTCAAGACGATCCATTCCTTCGACGAA-TTTTCT-AACATTCCATGCTCGGGAAATCGCATC
* *
34975 ATTTGGTTTAAATAATTTGTCATT
191 ATTTGGTCTAAATAGTTTGTCATT
* * *
34999 TTGTAAACAACTTTTTGTCTTTGAGTTAAAAACTTATCTATGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * *
35064 CTTCGACGAACTTCTGAACTTGTCTAACATTTAAGAGTTCTTTTATAACTTTGGCTCCTAATAAT
66 CTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCTCCTAA-AGT
* ** * * * * *
35129 ATTCAAGATGATCCATTCCTTAAACCAATTTTCTGAACATTCCGTGATCTGGAAATCGCATCGTT
130 ATTCAAGACGATCCATTCCTTCGACGAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATT
* *
35194 TGGTCTATAA-AGTTTTTGATT
194 TGGTCTA-AATAGTTTGTCATT
* * * * * * * *
35215 TTGTAAACAACATTTTGTTTTTGCATTAAAAA-TCTATTTACATGAGAATTGTTACTATATTGAT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * *
35279 TCTAGGATGAACTTCTGAACTTGTCAGACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA
65 TCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCTCC--TAAA
* * * * * * * * *
35344 -TATTCAAGATGATTCTTTCCTTCGACTAATTTTCCTAACCTTCC-T-CTTTTGGGAAAACACGT
128 GTATTCAAGACGATCCATTCCTTCGACGAATTTT-CTAACATTCCATGC--TCGGGAAATCGCAT
* * *
35406 CATTTGGTCAAAATAGTTTTTAATT
190 CATTTGGTCTAAATAGTTTGTCATT
* * *
35431 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCCTCTTGGTT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
** * * ** * * *
35496 CTTGGACGAACTTCCAAACTTGTTAGACATGCACGAGTTCTTTTATAACTTTGGTTCCT-GAGTA
66 CTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCTCCTAAAGTA
* *
35560 TACTCAAGACGATCCATTCCTTCGACGAATTTT-TAAAATTCCATGCTCGGGAAATCGCATTATT
131 T--TCAAGACGATCCATTCCTTCGACGAATTTTCTAACATTCCATGCTCGGGAAATCGCATCATT
35624 TGGTCTAAATAGTTTGTCATT
194 TGGTCTAAATAGTTTGTCATT
* * * * *** * * * * *
35645 TTATAAA-AATCTTTTGGTTTTTAAATTAAATTTTTTTTTACGTGGGAACTGTATCTCTCTTTGT
1 TTGTAAACAA-CTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* ** * * *
35709 TCTTGGACAAACTTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAATTTTGGTTCCTTTAAA
65 TCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCTCC--TAAA
* * * * * * * *
35774 -TATTTAAGACGACCCATTCCTTTGACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCA
128 GTATTCAAGACGATCCATTCCTTCGACGAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCA
* * *
35838 TTTGATCAAAATAGTTTTTCATT
192 TTTGGTCTAAATAGTTTGTCATT
* * * ** ** *
35861 TTCTTAACAACTTTTGGTCCATGAATTAAAAACTTATTCGCGTGAGAATTATTTCT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
35917 TCTCAAACAT
Statistics
Matches: 739, Mismatches: 152, Indels: 52
0.78 0.16 0.06
Matches are distributed among these distances:
213 36 0.05
214 183 0.25
215 15 0.02
216 491 0.66
217 12 0.02
218 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (214 bp):
TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGCTCCTAAAGTA
TTCAAGACGATCCATTCCTTCGACGAATTTTCTAACATTCCATGCTCGGGAAATCGCATCATTTG
GTCTAAATAGTTTGTCATT
Found at i:35877 original size:430 final size:432
Alignment explanation
Indices: 34864--35915 Score: 1158
Period size: 430 Copynumber: 2.4 Consensus size: 432
34854 TGAACTTTCG
* * ** * *
34864 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTCCGACTGC-TTAAAGTATTCAAGACGATCTT
1 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAA-TATTCAAGACGATCCT
* * * * * * ** *
34928 TTCCTTCGA-GAATTTTTTTGGACATTCCATGCTCAGGAAATCGCATCATTTGGTTTAAATAATT
65 TTCCTTCGACCAA-TTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTT
* * * * * * *
34992 TGTCATTTTGTAAACAACTTTTTGTCTTTGAGTTAAAAACTTATCTATGTGAGAATTGTTTCTCT
129 TTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCCT
** **
35057 CTTGGTTCTTCGACGAACTTCTGAACTTGTCTAACATTTAAGAGTTCTTTTATAACTTTGGCTCC
194 CTTGGTTCTTCGACGAACTTCCAAACTTGTCTAACATGCAAGAGTTCTTTTATAACTTTGGCTCC
* * * * *
35122 TAATAATATTCAAGATGATCCATTCCTTAAACCAATTTTCTGAACATTCCGTGATCTGGAAATCG
259 TAATAATACTCAAGACGATCCATTCCTTAAACCAATTTTCTGAAAATTCCATGATCGGGAAATCG
* * * * **
35187 CATCGTTTGGTCTATAAAGTTTTTGATTTTGTAAACAACATTTTGTTTTTGCATTAAAAATCTAT
324 CATCATTTGGTCTATAAAGTTTGTCATTTTATAAACAACATTTTGTTTTTAAATTAAAAATCTAT
* ** **
35252 TTACATGAGAATTGTTACTATATTGATTCTAGGATGAACTTCTG
389 TTACATGAGAACTGTTACTATATTGATTCTAGGACAAACTTCCA
* * * *
35296 AACTTGTCAGACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATTCTT
1 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAATATTCAAGACGATCCTT
* * * * * *
35361 TCCTTCGACTAATTTTCCT-AACCTTCC-TCTTTTGGGAAAACACGTCATTTGGTCAAAATAGTT
66 TCCTTCGACCAATTTT-TTGAACCTTCCAT-TCTCGGGAAATCACATCATTTGGTCAAAATAGTT
*
35424 TTTAATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCCT
129 TTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCCT
* * *
35489 CTTGGTTCTTGGACGAACTTCCAAACTTGT-TAGACATGCACGAGTTCTTTTATAACTTTGGTTC
194 CTTGGTTCTTCGACGAACTTCCAAACTTGTCTA-ACATGCAAGAGTTCTTTTATAACTTTGGCTC
* ** * *
35553 CTGAGT-ATACTCAAGACGATCCATTCCTTCGACGAATTTT-T-AAAATTCCATGCTCGGGAAAT
258 CT-AATAATACTCAAGACGATCCATTCCTTAAACCAATTTTCTGAAAATTCCATGATCGGGAAAT
* **
35615 CGCATTATTTGGTCTA-AATAGTTTGTCATTTTATAAA-AATC-TTTTGGTTTTTAAATTAAATT
322 CGCATCATTTGGTCTATAA-AGTTTGTCATTTTATAAACAA-CATTTT-GTTTTTAAATTAAAAA
* * * * * * *
35677 TTTTTTTACGTGGGAACTG-TATCTCTCTTTG-TTCTTGGACAAACTTCCA
384 TCTATTTACATGAGAACTGTTA-CTAT-ATTGATTCTAGGACAAACTTCCA
* * * * *
35726 AACTTGTCAAACATTTACGAGTTCTTTTATAATTTTGGTTCCTTTAAATATTTAAGACGACCCAT
1 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAATATTCAAGACGATCCTT
* *
35791 TCCTTTGACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTGATCAAAATAGTTTT
66 TCCTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTT
* ** ** *
35856 TCATTTTCTTAACAACTTTTGGTCCATGAATTAAAAACTTATTCGCGTGAGAATTATTTC
131 TCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
35916 TTCTCAAACA
Statistics
Matches: 513, Mismatches: 94, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
429 11 0.02
430 251 0.49
431 8 0.02
432 234 0.46
433 9 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (432 bp):
AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAATATTCAAGACGATCCTT
TCCTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTT
TCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCCTCT
TGGTTCTTCGACGAACTTCCAAACTTGTCTAACATGCAAGAGTTCTTTTATAACTTTGGCTCCTA
ATAATACTCAAGACGATCCATTCCTTAAACCAATTTTCTGAAAATTCCATGATCGGGAAATCGCA
TCATTTGGTCTATAAAGTTTGTCATTTTATAAACAACATTTTGTTTTTAAATTAAAAATCTATTT
ACATGAGAACTGTTACTATATTGATTCTAGGACAAACTTCCA
Found at i:40636 original size:12 final size:12
Alignment explanation
Indices: 40619--40656 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
40609 CAAGAGGAAT
40619 GAAAAACAAGAA
1 GAAAAACAAGAA
*
40631 GAAAAAGAA-AA
1 GAAAAACAAGAA
40642 TGAAAAACAAGAA
1 -GAAAAACAAGAA
40655 GA
1 GA
40657 TACCCATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 2 0.09
12 18 0.82
13 2 0.09
ACGTcount: A:0.74, C:0.05, G:0.18, T:0.03
Consensus pattern (12 bp):
GAAAAACAAGAA
Found at i:42822 original size:215 final size:214
Alignment explanation
Indices: 42397--43122 Score: 913
Period size: 215 Copynumber: 3.4 Consensus size: 214
42387 CAAGAAACTG
* * * * *
42397 CATCATTTGGTCTAAATAGTTTGTCATTTTA-TAAAAATCATTTGGTCTTTAAATTAAAATTTTT
1 CATCATTTGGTCAAAATAGTTTGTCATTTTATTAAAAA-CTTTTGGTCTTTGAATTAAAAATTTA
* *
42461 TTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGACAAACATTTACGA
65 TTTACGTGAGAATTATATCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACGA
* * * *
42526 GTTCTTTTATAACTTTAGTTCCTTTGAATATTTAAGACGACTAATTCCTTCGACCAATTTTTTGA
130 GTTCTTTTATAACTTTGGTTCCTTTAAATATTTAAGACGAC-CATTCCTTC-ACCAATTTTCTGA
42591 ACCTTCCATTCTCGGGAAATCA
193 ACCTTCCATTCTCGGGAAATCA
* * * *
42613 CATCATTTGGTCAAAATAGTTTTTAATTTT-TTAACAACTTTTGGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCAAAATAGTTTGTCATTTTATTAAAAACTTTTGGTCTTTGAATTAAAAATTTAT
* * * * * **
42677 TTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAGACATACACGAG
66 TTACGTGAGAATTATATCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACGAG
** * *
42742 TTCTTTTATAACTTTGGTTCCTAAAAATATTCAAGACGATCCATTCCTTCATCCAATTTTCCGAA
131 TTCTTTTATAACTTTGGTTCCTTTAAATATTTAAGACGA-CCATTCCTTCA-CCAATTTTCTGAA
* *
42807 CATTCCATGCTCGGGAAATCA
194 CCTTCCATTCTCGGGAAATCA
* * * * *
42828 CATTATTT-GTCTAAATAGTTTGTCATTTTATAAAAAACTTTTGGT-TTTGAAATTAAAATTTTT
1 CATCATTTGGTCAAAATAGTTTGTCATTTTATTAAAAACTTTTGGTCTTTG-AATTAAAAATTTA
* * * *
42891 TTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAAACTTCCGAATTTGTCAAACATTTACGA
65 TTTACGTGAGAATTATATCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACGA
* *
42956 GTTCTTTTATAA-TTTCGGTTCCTTTAAATATTTAAGATGACCCATTCCTTTGACCAATTTTCTG
130 GTTCTTTTATAACTTT-GGTTCCTTTAAATATTTAAGACGA-CCATTCC-TTCACCAATTTTCTG
43020 AACCTTCCATTCTCGGGAAATCA
192 AACCTTCCATTCTCGGGAAATCA
* * * ** *
43043 CATCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAACTTTTGGTCCATGAATTAAAAAATTAT
1 CATCATTTGGTCAAAATAGTTTGTCATTTTATTAAAAACTTTTGGTCTTTGAATTAAAAATTTAT
* *
43108 TCATGTGAGAATTAT
66 TTACGTGAGAATTAT
43123 TTCTTCTCAA
Statistics
Matches: 429, Mismatches: 72, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
214 26 0.06
215 311 0.72
216 90 0.21
217 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (214 bp):
CATCATTTGGTCAAAATAGTTTGTCATTTTATTAAAAACTTTTGGTCTTTGAATTAAAAATTTAT
TTACGTGAGAATTATATCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACGAG
TTCTTTTATAACTTTGGTTCCTTTAAATATTTAAGACGACCATTCCTTCACCAATTTTCTGAACC
TTCCATTCTCGGGAAATCA
Found at i:43637 original size:215 final size:215
Alignment explanation
Indices: 43182--43809 Score: 737
Period size: 215 Copynumber: 2.9 Consensus size: 215
43172 ATTCAACACA
* * * *
43182 ATTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAGAATTTTTTCTATCTT-T
1 ATTGTAAACAAC-TTTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGA
* * * *
43246 TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGCTGCTTA-A
65 TTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGCTCCTTAGA
** ** *
43310 AGTATTCAAGATGAT-ATATTCCTTCGATGAATTTTTTGAACATTCCATGCTCGCGAAATTGCAT
130 A-TATTCAAGATGATCA-ATTCCTTCGACCAATTTTCCGAACATTCCATGCTCG-GAAATCGCAT
* *
43374 CATTTGGTTTAAATAGTTTGTGAT
192 CATTTAGTCTAAATAGTTTGTGAT
* * * * *
43398 TTTGTAAACAAC-TTTTGATCTTTGAGTTAAAAACTTATCTACATGAGAATTGTTTCTCTCTTGG
1 ATTGTAAACAACTTTTTG-TCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGA
* * * * *
43462 TTCTTCGACAAACTTTCAAACTTGTCAAACATTTACGAGTCCTTTTATAACTTTGGCTCCTGAGA
65 TTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGCTCCTTAGA
* ** * *
43527 ATACTCAAGATGATCAATTCCTTAAACCAA-TTTCCAAACATTCCATGCTCTGGAAATCGCATCG
130 ATATTCAAGATGATCAATTCCTTCGACCAATTTTCCGAACATTCCATGCTC-GGAAATCGCATCA
*
43591 TTTAGTCTATAA-AGTTTTTGAT
194 TTTAGTCTA-AATAGTTTGTGAT
* *
43613 ATTGTAAACAACTTTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTATGTTGAT
1 ATTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGAT
* * * * ** *
43678 TCTAGGATGAACTTTCGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGATTCCTTTGAA
66 TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGCTCCTTAGAA
* * * **
43743 TATTCAAGATGATCCATTCCTTCGACCAATTTTCCGAACCTTCCATTCTCGGGAAATTACATCAT
131 TATTCAAGATGATCAATTCCTTCGACCAATTTTCCGAACATTCCATGCTC-GGAAATCGCATCAT
43808 TT
195 TT
43810 GGTGATGTGA
Statistics
Matches: 344, Mismatches: 60, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
214 5 0.01
215 211 0.61
216 125 0.36
217 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (215 bp):
ATTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGAT
TCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGCTCCTTAGAA
TATTCAAGATGATCAATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGAAATCGCATCATT
TAGTCTAAATAGTTTGTGAT
Found at i:45017 original size:50 final size:50
Alignment explanation
Indices: 44931--45061 Score: 138
Period size: 50 Copynumber: 2.6 Consensus size: 50
44921 TGCATGACTT
* *
44931 GATTTAATGATGTAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATG-TCAG
* * * * *
44983 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATTCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
* *
45033 TATTTATGATGCAAACTTAACTAATCATG
1 GATTTATGATGCAAATTTAACTAA-CATG
45062 AGAGTTAATG
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
49 1 0.01
50 49 0.73
51 12 0.18
52 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
Found at i:45243 original size:31 final size:32
Alignment explanation
Indices: 45198--45260 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
45188 AGATGCTTTT
* *
45198 ATGAATGACTTAATT-AA-ATGCAAAACACTTA
1 ATGAAAGACATAATTAAAGATGC-AAACACTTA
45229 ATGAAAGACATAATTAAAGATGCAAACACTTA
1 ATGAAAGACATAATTAAAGATGCAAACACTTA
45261 GTAAACTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.46
32 11 0.39
33 4 0.14
ACGTcount: A:0.51, C:0.13, G:0.11, T:0.25
Consensus pattern (32 bp):
ATGAAAGACATAATTAAAGATGCAAACACTTA
Found at i:45982 original size:216 final size:215
Alignment explanation
Indices: 45420--46451 Score: 1151
Period size: 216 Copynumber: 4.8 Consensus size: 215
45410 GTGACCGTGC
* * *
45420 TCACATCATTTTGTCAAAATATTTTGTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACT
1 TCACATCATTTGGTCAAAATAGTTTGTCATTTT-ATAACAACTTTTGGTCTTTGAATTAAAAACT
* * * **
45485 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCCAAACTTGTCAGACATACA
65 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCC-AACTTGTCAAACATTTA
*
45549 CGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATTCATTCCTTTGACCAATTTTT
129 CGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATCCATTCCTTTGACCAATTTTT
*
45614 CGAACATTCCATGCTCGAAAAA
194 CGAACATTCCATGCTCGAGAAA
* * * * * *
45636 TCACATTATTTAGTCTAAATAGTTTGTCATTTTAAAAAAAAATCTTTTGGTCTTTAAATTAAAAA
1 TCACATCATTTGGTCAAAATAGTTTGTCATTTT--ATAACAA-CTTTTGGTCTTTGAATTAAAAA
* * * * * *
45701 CTTTTTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAAACTTTCAAACTTGACAAACATTT
63 CTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCCAACTTGTCAAACATTT
* ** * *
45766 ACGAGTTCTTTTATAACTTTGATTCTTTTGAATATTTAAGACGACCCATTCCTTTGACCAA-TTT
128 ACGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATCCATTCCTTTGACCAATTTT
* * *
45830 TCGAACCTTCCATTCTCGGGAAA
193 TCGAACATTCCATGCTCGAGAAA
* * * *
45853 TCACATCATTTGGTCAAAATAGTTTTTTTATTTTGCTAACAACTTTAGGTCTTTGAATTAAAAAC
1 TCACATCATTTGGTCAAAATAG-TTTGTCATTTT-ATAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
45918 TTATTTACATGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCCAACTTGTTAGACATTTA
64 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCCAACTTGTCAAACATTTA
* * * * * *
45983 CAAATTCTTTTATAACTTCGATTC-TGAGAATATTCAACACGATCCATTCTTTTGACCAATTTTT
129 CGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATCCATTCCTTTGACCAATTTTT
*
46047 CGAACATTCCATGGTCGAGAAA
194 CGAACATTCCATGCTCGAGAAA
* * * * *
46069 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAAAATCTTTTAGTCTTCGAATTAAAAACG
1 TCACATCATTTGGTCAAAATAGTTTGTCATTTTATAACAA-CTTTTGGTCTTTGAATTAAAAAC-
* * * *
46134 TT-TTTACGTGGGAATTGTATCTCTCTTTTTTCTTGGACAAAC-TTCCGAACTTGTCAAACATTT
64 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCC-AACTTGTCAAACATTT
** * * * * * * * *
46197 AAAAGTTCTTTTATTACATCGGTTCCTT-TGAATATTCAAGATGATCCGTTACTTCGACCAAATT
128 ACGAGTTCTTTTATAACTTTGGTT-CTTGAGAATATTCAAGACGATCCATTCCTTTGACC-AATT
* ** * *
46261 TTT-GAACCTTCTGTTCTCGGGAAA
191 TTTCGAACATTCCATGCTCGAGAAA
* * * * *
46285 TCACATCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACC
1 TCACATCATTTGGTCAAAATAGTTTGTCATTTT-ATAACAACTTTTGGTCTTTGAATTAAAAACT
* * * ** * *
46350 TATTTACGTGACAATTATTTCTCTCTTTGTTCTTGGATGAACTTTTGATCTTCTCAAACATTTAC
65 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCCAACTTGTCAAACATTTAC
*
46415 GAGTTCTTTTATAACTTTGGTTCTTGAGAGTATTCAA
130 GAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAA
46452 CACAATTGTA
Statistics
Matches: 672, Mismatches: 129, Indels: 30
0.81 0.16 0.04
Matches are distributed among these distances:
214 9 0.01
215 128 0.19
216 333 0.50
217 64 0.10
218 135 0.20
219 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (215 bp):
TCACATCATTTGGTCAAAATAGTTTGTCATTTTATAACAACTTTTGGTCTTTGAATTAAAAACTT
ATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCCAACTTGTCAAACATTTACG
AGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATCCATTCCTTTGACCAATTTTTCG
AACATTCCATGCTCGAGAAA
Found at i:46229 original size:431 final size:434
Alignment explanation
Indices: 45420--46454 Score: 1454
Period size: 431 Copynumber: 2.4 Consensus size: 434
45410 GTGACCGTGC
* * *
45420 TCACATCATTTTGTCAAAATA-TTTTGTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCACATCATTTGGTCAAAATAGTTTTTTCATTTTGCTAACAACTTTTGGTCTTTGAATTAAAAAC
**
45484 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCCAAACTTGTCAGACATAC
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCC-AACTTGTCAGACATTT
* *
45548 ACGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGACGATTCATTCCTTTGACCAATTTT
130 ACGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAACACGATCCATTCCTTTGACCAATTTT
*
45613 TCGAACATTCCATGCTCGAAAAATCACATTATTTAGTCTAAATAGTTTGTCATTTTAAAAAAAAA
195 TCGAACATTCCATGCTCGAAAAATCACATCATTTAGTCTAAATAGTTTGTCATTTT-AAAAAAAA
* * *
45678 TCTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAA
259 TCTTTTAGTCTTCAAATTAAAAACGTTTTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAA
* ** * * * *
45743 ACTTTCAAACTTGACAAACATTTACGAGTTCTTTTATAACTTTGATTCTTTTGAATATTTAAGAC
324 ACTTCCAAACTTGACAAACATTTAAAAGTTCTTTTATAACATCGATTCCTTTGAATATTCAAGAC
* *
45808 GACCCATTCCTTTGACC-AATTTTCGAACCTTCCATTCTCGGGAAA
389 GACCCATTACTTCGACCAAATTTTCGAACCTTCCATTCTCGGGAAA
* *
45853 TCACATCATTTGGTCAAAATAGTTTTTTTATTTTGCTAACAACTTTAGGTCTTTGAATTAAAAAC
1 TCACATCATTTGGTCAAAATAGTTTTTTCATTTTGCTAACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
45918 TTATTTACATGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCCAACTTGTTAGACATTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCAACTTGTCAGACATTTA
* * * * *
45983 CAAATTCTTTTATAACTTCGATTC-TGAGAATATTCAACACGATCCATTCTTTTGACCAATTTTT
131 CGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAACACGATCCATTCCTTTGACCAATTTTT
* * * * *
46047 CGAACATTCCATGGTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-ATAAAAATC
196 CGAACATTCCATGCTCGAAAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTAAAAAAAATC
* *
46111 TTTTAGTCTTCGAATTAAAAACGTTTTTACGTGGGAATTGTATCTCTCTTTTTTCTTGGACAAAC
261 TTTTAGTCTTCAAATTAAAAACGTTTTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAAAC
* * * * *
46176 TTCCGAACTTGTCAAACATTTAAAAGTTCTTTTATTACATCGGTTCCTTTGAATATTCAAGATGA
326 TTCCAAACTTGACAAACATTTAAAAGTTCTTTTATAACATCGATTCCTTTGAATATTCAAGACGA
* * * **
46241 TCCGTTACTTCGACCAAATTTTTGAACCTTCTGTTCTCGGGAAA
391 CCCATTACTTCGACCAAATTTTCGAACCTTCCATTCTCGGGAAA
* *
46285 TCACATCATTTGGTCAAAATAG-TTTTTCATTTT-CTTAACAAGTTTTGGTCTATGAATTAAAAA
1 TCACATCATTTGGTCAAAATAGTTTTTTCATTTTGC-TAACAACTTTTGGTCTTTGAATTAAAAA
* * * * ** * * *
46348 CCTATTTACGTGACAATTATTTCTCTCTTTGTTCTTGGATGAACTTTTGATCTTCTCAAACATTT
65 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCAACTTGTCAGACATTT
*
46413 ACGAGTTCTTTTATAACTTTGGTTCTTGAGAGTATTCAACAC
130 ACGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAACAC
46455 AATTGTAAAC
Statistics
Matches: 527, Mismatches: 70, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
430 1 0.00
431 240 0.46
432 62 0.12
433 107 0.20
434 113 0.21
435 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (434 bp):
TCACATCATTTGGTCAAAATAGTTTTTTCATTTTGCTAACAACTTTTGGTCTTTGAATTAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCAACTTGTCAGACATTTA
CGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAACACGATCCATTCCTTTGACCAATTTTT
CGAACATTCCATGCTCGAAAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTAAAAAAAATC
TTTTAGTCTTCAAATTAAAAACGTTTTTACGTGGGAATTGTATCTCTCTTTGTTCTTGGACAAAC
TTCCAAACTTGACAAACATTTAAAAGTTCTTTTATAACATCGATTCCTTTGAATATTCAAGACGA
CCCATTACTTCGACCAAATTTTCGAACCTTCCATTCTCGGGAAA
Found at i:46659 original size:10 final size:10
Alignment explanation
Indices: 46637--46676 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
46627 TTATGTAACG
46637 TGAATTGTTTT
1 TGAATT-TTTT
46648 TGAATTTTTT
1 TGAATTTTTT
46658 TGAA-TTTTT
1 TGAATTTTTT
46667 TGAATTTTTT
1 TGAATTTTTT
46677 AAAAACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.32
10 13 0.46
11 6 0.21
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (10 bp):
TGAATTTTTT
Found at i:46665 original size:9 final size:9
Alignment explanation
Indices: 46644--46676 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
46634 ACGTGAATTG
46644 TTTTTGAATT
1 TTTTTGAA-T
46654 TTTTTGAAT
1 TTTTTGAAT
46663 TTTTTGAAT
1 TTTTTGAAT
46672 TTTTT
1 TTTTT
46677 AAAAACATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.73
Consensus pattern (9 bp):
TTTTTGAAT
Found at i:49529 original size:21 final size:25
Alignment explanation
Indices: 49500--49552 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 25
49490 TAGAAAACTT
*
49500 AAATTAAAAAT-GC-AAA-TAATA-
1 AAATAAAAAATGGCTAAAGTAATAG
49521 AAATAAAAAATGGCTAAAGTAATAG
1 AAATAAAAAATGGCTAAAGTAATAG
49546 AAATAAA
1 AAATAAA
49553 GTTTTCCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 10 0.37
22 2 0.07
23 3 0.11
24 5 0.19
25 7 0.26
ACGTcount: A:0.66, C:0.04, G:0.09, T:0.21
Consensus pattern (25 bp):
AAATAAAAAATGGCTAAAGTAATAG
Found at i:53057 original size:19 final size:19
Alignment explanation
Indices: 53035--53071 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
53025 TCAAAAAGTC
53035 GAGAAAAA-AAGAAAAATAT
1 GAGAAAAATAA-AAAAATAT
53054 GAGAAAAATAAAAAAATA
1 GAGAAAAATAAAAAAATA
53072 AAAAATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (19 bp):
GAGAAAAATAAAAAAATAT
Found at i:54700 original size:12 final size:12
Alignment explanation
Indices: 54685--54726 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
54675 TTCTCAAGAG
54685 GAAAAAGAAAAT
1 GAAAAAGAAAAT
*
54697 GAAAAACAAGAA-
1 GAAAAAGAA-AAT
54709 GAAAAAGAAAAT
1 GAAAAAGAAAAT
54721 GAAAAA
1 GAAAAA
54727 CAAGAAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (12 bp):
GAAAAAGAAAAT
Found at i:54706 original size:24 final size:24
Alignment explanation
Indices: 54679--54734 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
54669 AGAGAGTTCT
*
54679 CAAGAGGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
54703 CAAGAAGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
54727 CAAGAAGA
1 CAAGAAGA
54735 TACCCATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.71, C:0.05, G:0.20, T:0.04
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAAATGAAAAA
Found at i:55531 original size:216 final size:217
Alignment explanation
Indices: 55131--55686 Score: 622
Period size: 216 Copynumber: 2.6 Consensus size: 217
55121 TTTCGTATCA
* *
55131 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAAC-
* * *
55196 TTCCG-ACTTGTCAGACATTTACGAATTCTTTTA-TAACTTCAGTT-CTTGAGAATATTCAAGAC
65 TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTAATTTC-GTTCCTTGAGAATATTCAAGAC
* * * * * * *
55258 GATCTATTCTTTTGACCAATTTTTCGATCATTCCATACTCGAGAAATCGCTTCATTTGGTCTAAA
129 GATCCATTCCTTCGACCAATTTTTCAACCATTCCATACTCGAGAAATCGCGTCATTTGGTCAAAA
55323 TAGTTTGTCATTTT-ATAAAAATCT
194 TAGTTTGTCATTTTCATAAAAA-CT
* * * **
55347 TTTGGTCTTTGAATTAAAAACTTTTTTACGTGGGAATTGTATCTCTCTTTTTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* * * *
55412 TCCGAACTTGTCAAACATTTACGAGTTATTTTATTAGTTTCGTTCCTT-TGAATATTCAAGATGA
66 TCCGAACTTGTCAAACATTTACGAGTTCTTTTATTAATTTCGTTCCTTGAGAATATTCAAGACGA
* * ** * * * *
55476 TCCCTTCCTTCGACCAATTTTTCAAACCTTTCGTTA-TTGGGAATTCTCGTCATTTGGTCAAAAT
131 TCCATTCCTTCGACCAATTTTTC-AACCATTCCATACTCGAGAAATCGCGTCATTTGGTCAAAAT
* * * *
55540 AGTTTTTCATTTTCTTAACAAGT
195 AGTTTGTCATTTTCATAAAAACT
* * * * *
55563 TTTGGTCTATGAATTAAAAACATATTTACGTGAGAACTATTTCTCTCTGGATTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* * * * * * *
55628 TCCGATCTTCTCAAACATTTATGAGTTCTTTTATTACTTTGGTT-CTTAAGAGTATTCAA
66 TCCGAACTTGTCAAACATTTACGAGTTCTTTTATTAATTTCGTTCCTTGAGAATATTCAA
55687 CACAATTGTA
Statistics
Matches: 284, Mismatches: 50, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
215 8 0.03
216 256 0.90
217 20 0.07
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (217 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
TCCGAACTTGTCAAACATTTACGAGTTCTTTTATTAATTTCGTTCCTTGAGAATATTCAAGACGA
TCCATTCCTTCGACCAATTTTTCAACCATTCCATACTCGAGAAATCGCGTCATTTGGTCAAAATA
GTTTGTCATTTTCATAAAAACT
Found at i:55783 original size:141 final size:142
Alignment explanation
Indices: 55572--55827 Score: 349
Period size: 141 Copynumber: 1.8 Consensus size: 142
55562 TTTTGGTCTA
*
55572 TGAATTAAAAACATATTTACGTGAGAACTATTTCTCTCTGGATTCTTGGACGAACTTCCGATCTT
1 TGAATTAAAAACATATTTACGTGAGAACTATTTCTCTCTGGATTCTTGGACGAACTTCCGAACTT
* * *
55637 CTCAAACATT-TATGAGTTCTTTTATTACTTTGGTT-CTTAAGAGTATTCAACACAATTGTAAAC
66 CTCAAAC-TTCTACGAGTTCTTTTATAACATTGGTTGCTTAA-AGTATTCAACACAATTGTAAAC
55700 AACTTTTTTGTCAT
129 AACTTTTTTGTCAT
* * *** * *
55714 TGAATTACAAACTTATTTACGTGAGAA-T-TTTCTCTCTCTTTTTCTTGGATGAACTTCTGAACT
1 TGAATTAAAAACATATTTACGTGAGAACTATTTCTCTCT-GGATTCTTGGACGAACTTCCGAACT
*
55777 TGTCAAACTTCTACGAGTTCTTTTATAACATTGGTTGCTTAAAGTATTCAA
65 TCTCAAACTTCTACGAGTTCTTTTATAACATTGGTTGCTTAAAGTATTCAA
55828 GATGATCTGT
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
140 11 0.11
141 58 0.59
142 30 0.30
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (142 bp):
TGAATTAAAAACATATTTACGTGAGAACTATTTCTCTCTGGATTCTTGGACGAACTTCCGAACTT
CTCAAACTTCTACGAGTTCTTTTATAACATTGGTTGCTTAAAGTATTCAACACAATTGTAAACAA
CTTTTTTGTCAT
Found at i:56230 original size:574 final size:574
Alignment explanation
Indices: 55139--56246 Score: 1283
Period size: 574 Copynumber: 1.9 Consensus size: 574
55129 CATTTGGTCT
55139 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCGACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCGACT
* *
55204 TGTCAGACATTTACGAATTCTTTTATAACTTCAGTTCTTGAGAATATTCAAGACGATCTATTCTT
66 TGTCAAACATTTACGAATTCTTTTATAACTTCAGTTCTTGAGAATATTCAAGACGATCTATTCCT
* * *
55269 TTGACCAATTTTTCGATCATTCCATACTCGAGAAATCGCTTCATTTGGTCTAAATAGTTTGTCAT
131 TTGACCAATTTTTCGAACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * * * **
55334 TTTATAAAAATCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGGGAATTGTATCTCTCTTTTT
196 TTTATAAAAATCTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTATATCTCTCTTGGT
** * * * ** *
55399 TCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTATTTTATTAGTTTCGTTCCTTTGAA
261 TCTTCAACGAACTTCCAAACTTGTCAAACATTTACAAGTCATTTTATTAACTTCGCTCCTTTGAA
* * ** ** * * * * * * *
55464 TATTCAAGATGATCCCTTCCTTCGACCAATTTTTCAAACCTTTCGTTATTGGGAATTCTCGTCAT
326 TATTCAAGACGATCCATTCCTTAAACCAATTTACCAAACATTCCATGATCGGGAATTCGCATCAT
* * *
55529 TTGGTCAAAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGT
391 TTGGCCAAAATAGATTTTCATTTTCTAAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGT
* * * * *
55594 GAGAACTATTTCTCTCTGGATTCTTGGACGAACTTCCGATCTTCTCAAACATTTATGAGTTCTTT
456 GAAAACTATTTCTATCTGGATTCTAGGACGAACTTCCGAACTTCTCAAACATTTACGAGTTCTTT
* *
55659 TATTACTTTGGTTCTTAAGAGTATTCAACACAATTGTAAACAACTTTTTTGTCA
521 TATAACTTCGGTTCTTAAGAGTATTCAACACAATTGTAAACAACTTTTTTGTCA
* * *
55713 TTGAATTACAAACTTATTTACGTGAGAATT-TTCTCTCTCTT-TTTCTTGGATGAAC-TTCTGAA
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGATGAACTTTCCG-A
* * *
55775 CTTGTCAAAC-TTCTACGAGTTCTTTTATAACATT-GGTTGCTT-A-AAGTATTCAAGATGATCT
64 CTTGTCAAACATT-TACGAATTCTTTTATAAC-TTCAGTT-CTTGAGAA-TATTCAAGACGATCT
* * ** * * *
55836 GTTCCTTTGAGCAATTTTTTTAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAATAGTT
125 ATTCCTTTGACCAATTTTTCGAACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTT
* *
55901 TGTCACTTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTATTTCT
190 TGTCA-TTTTATAAA-AATCTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTATATCT
*
55965 CTCTTGGTTCTTCAACGAACTTCCAAACTTGTCAAACATTTTACAAGTCCTTTTA-TAACTTCGG
253 CTCTTGGTTCTTCAACGAACTTCCAAACTTGTCAAACA-TTTACAAGTCATTTTATTAACTTC-G
* * *
56029 CT-CTTGTGAATATTCAAGACGATCCATTCCTTAAACCAATTTACCGAATATTCCATGCTCGGGA
316 CTCCTT-TGAATATTCAAGACGATCCATTCCTTAAACCAATTTACCAAACATTCCATGATCGGG-
* * * * * * *
56093 AATT-GCATCGTTTGGCCTTAAA-AGATTTTGATTTTGTAAAGAACGTTTT-GTCTTTGAA-TGA
379 AATTCGCATCATTTGGCC-AAAATAGATTTTCATTTTCTAAACAA-GTTTTGGTCTATGAATTAA
** * * * * * * *
56154 AAATTTATTTACGTGAAAATTGTTTCTATAGTGG-TTCTAGGATGAACTTCTGAACTTGTCAGAC
442 AAACATATTTACGTGAAAACTATTTCTAT-CTGGATTCTAGGACGAACTTCCGAACTTCTCAAAC
56218 ATTTACGAGTTCTTTTATAACTTCGGTTC
506 ATTTACGAGTTCTTTTATAACTTCGGTTC
56247 CTTTGAATAT
Statistics
Matches: 442, Mismatches: 77, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
572 8 0.02
573 119 0.27
574 207 0.47
575 96 0.22
576 12 0.03
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (574 bp):
TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCCGACT
TGTCAAACATTTACGAATTCTTTTATAACTTCAGTTCTTGAGAATATTCAAGACGATCTATTCCT
TTGACCAATTTTTCGAACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
TTTATAAAAATCTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTATATCTCTCTTGGT
TCTTCAACGAACTTCCAAACTTGTCAAACATTTACAAGTCATTTTATTAACTTCGCTCCTTTGAA
TATTCAAGACGATCCATTCCTTAAACCAATTTACCAAACATTCCATGATCGGGAATTCGCATCAT
TTGGCCAAAATAGATTTTCATTTTCTAAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGT
GAAAACTATTTCTATCTGGATTCTAGGACGAACTTCCGAACTTCTCAAACATTTACGAGTTCTTT
TATAACTTCGGTTCTTAAGAGTATTCAACACAATTGTAAACAACTTTTTTGTCA
Found at i:56529 original size:252 final size:251
Alignment explanation
Indices: 56078--56575 Score: 651
Period size: 252 Copynumber: 2.0 Consensus size: 251
56068 TTTACCGAAT
* ** * * *
56078 ATTCCATGCTCGGGAAATTGCATCGTTTGGCCTTAAAAGATTTTGATTTTGTAAAGAACGTTTTG
1 ATTCCACGCTCGGGAAATCACATCATTTGGCCTTAAAAGATTTTCATTTTGTAAACAACGTTTTG
* * * * ** *
56143 TCTTTGAATGAAAATTTATTTACGTGAAAATTGTTTCTATAGTGGTTCTAGGATGAACTTCTGAA
66 TCTTTGAATAAAAACTTATATACGTGAAAATTGTTTCTATAGTGGCTCTAGGACAAACTTCCGAA
* * *
56208 CTTGTCAGACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGATCCTTTC
131 CTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGACCCATTC
*
56273 CTTCGACCAATTTTTCGAACCTTCCATTCTCGAAAAATCACATCATTTGGTCAAAC
196 CTTCGACCAACTTTTCGAACCTTCCATTCTCGAAAAATCACATCATTTGGTCAAAC
*
56329 ATTCCACGCTCGGGAAATCACATCATTTGG-TTTAAATAG-TTTGTCATTTTGTAAACAAC-TTT
1 ATTCCACGCTCGGGAAATCACATCATTTGGCCTTAAA-AGATTT-TCATTTTGTAAACAACGTTT
* * * ** **
56391 TGGTCTTTGAGTTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGCTCTTTGACAAACTTC
64 T-GTCTTTGA-ATAAAAACTTATATACGTGAAAATTGTTTCTATAGTGGCTCTAGGACAAACTTC
* *
56456 CGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATTCAAGATGACCC
127 CGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGACCC
* ** * *
56521 ATTCCTTCGACCAACTTTTCGAGCCTTCCATTCTCGGGAAATGACGTCATTTGGT
192 ATTCCTTCGACCAACTTTTCGAACCTTCCATTCTCGAAAAATCACATCATTTGGT
56576 TAAAATAGTT
Statistics
Matches: 211, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
250 12 0.06
251 50 0.24
252 149 0.71
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (251 bp):
ATTCCACGCTCGGGAAATCACATCATTTGGCCTTAAAAGATTTTCATTTTGTAAACAACGTTTTG
TCTTTGAATAAAAACTTATATACGTGAAAATTGTTTCTATAGTGGCTCTAGGACAAACTTCCGAA
CTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGACCCATTC
CTTCGACCAACTTTTCGAACCTTCCATTCTCGAAAAATCACATCATTTGGTCAAAC
Found at i:56952 original size:328 final size:328
Alignment explanation
Indices: 56377--56976 Score: 762
Period size: 328 Copynumber: 1.8 Consensus size: 328
56367 GTTTGTCATT
* *
56377 TTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGCT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCTATCTTGGCT
* * ** *
56442 CTTTGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAAT
66 CTTCGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGACTCCTTTAAAT
* * * * * *
56507 ATTCAAGATGACCCATTCCTTCGACCAACTTTTCGAGCCTTCCATTCTCGGGAAATGACGTCATT
131 ATTCAAGACGACCCATTCCTTCGACAAACTTTTCGAACATTCCATGCTCGGGAAATGACATCATT
* * *
56572 TGGTTAAAATAGTTTTTCATTTTCTTAACAACTTTTTGTCCATGAATTAAAAACTTAGT-CACGT
196 TGGTTAAAATAGTTTATCATTTTCTTAACAACCTTTGGTCCATGAATTAAAAACTTA-TACACGT
56636 GAGAATTATTTCTTCTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCTTTAGAGTATTCAAC
260 GAGAATTATTTCTTCTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCTTTAGAGTATTCAAC
56701 ACAA
325 ACAA
* * * * **
56705 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAGAATTTTTTCTATCTT-TT
1 TTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCTATCTTGGC
* * *
56769 TCTTCGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGACTGC-TTAAA
65 TCTTCGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGACTCCTTTAAA
* * * * * **
56833 GTATTCAAGACGATCTATTCCTTCGAGAAATTTTTTGAACATTCTGTGCTCGGGAAATCG-CATC
130 -TATTCAAGACGACCCATTCCTTCGACAAACTTTTCGAACATTCCATGCTCGGGAAAT-GACATC
* ** * *
56897 ATTTGGTTTAAATAGTTTGAT-ATTTT-TTAAACAACCTTTGGTCTTTGAGTTAAAAACTTATAT
193 ATTTGGTTAAAATAGTTT-ATCATTTTCTT-AACAACCTTTGGTCCATGAATTAAAAACTTATAC
*
56960 ACGTGAGAATTGTTTCT
256 ACGTGAGAATTATTTCT
56977 CTCTTGGTTC
Statistics
Matches: 228, Mismatches: 38, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
327 7 0.03
328 175 0.77
329 46 0.20
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (328 bp):
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCTATCTTGGCT
CTTCGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGACTCCTTTAAAT
ATTCAAGACGACCCATTCCTTCGACAAACTTTTCGAACATTCCATGCTCGGGAAATGACATCATT
TGGTTAAAATAGTTTATCATTTTCTTAACAACCTTTGGTCCATGAATTAAAAACTTATACACGTG
AGAATTATTTCTTCTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCTTTAGAGTATTCAACA
CAA
Found at i:57092 original size:216 final size:216
Alignment explanation
Indices: 56705--57251 Score: 629
Period size: 216 Copynumber: 2.5 Consensus size: 216
56695 TTCAACACAA
* * *
56705 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAGAATTTTTTCTATCTT-TT
1 TTGTAAACAAC-TTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGAT
* *
56769 TCTTCGACAAACTTTCGAACTTGTCAAACT-TTTACGAGTTCTTTTATAACTTCGACTGCTTAAA
65 TCTTCGACGAACTTCCGAACTTGTCAAA-TATTTACGAGTTCTTTTATAACTTCGACTGCTTAAA
* ** * *** **
56833 GTATTCAAGACGATCTATTCCTTCGAGAAATTTTTTGAACATTCTGTGCTCGGGAAATCGCATCA
129 GTATTCAAGACGATCCATTCCTTAAACAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCA
* *
56898 TTTGGTTTAAATAGTTTGATATT
194 TTTGGTCTAAAAAGTTTGATATT
* * * * * * *
56921 TTTTAAACAACCTTTGGTCTTTGAGTTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGATT
* * * *
56986 CTTCGACGAACTTCCAAACTTGTCAAATATTTACGAGTCCTTTTATAACTTCGGCT-CTT-GAGT
66 CTTCGACGAACTTCCGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGACTGCTTAAAGT
* * ** *
57049 ACATTCAAGATGATCCATTCCTTAAACCAATTTTCCAAACATTCCATGCTCTTGAAATCGCATCG
131 --ATTCAAGACGATCCATTCCTTAAACAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCA
**
57114 TTTGGTCTAAAAAGTTTTTTATT
194 TTTGGTCTAAAAAGTTTGATATT
** * *
57137 TTGTAAACAA-TTTTTGTCTTTGAATTAAAATTTTATTTACATGAGAATTGTTTCTATATTGATT
1 TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGATT
* * * *
57201 -TTAGGATGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTT
66 CTT-CGACGAACTTCCGAACTTGTCAAATATTTACGAGTTCTTTTATAACTT
57252 TGGTTCCTTT
Statistics
Matches: 276, Mismatches: 50, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
214 5 0.02
215 133 0.48
216 138 0.50
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.42
Consensus pattern (216 bp):
TTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGATT
CTTCGACGAACTTCCGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGACTGCTTAAAGT
ATTCAAGACGATCCATTCCTTAAACAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATT
TGGTCTAAAAAGTTTGATATT
Found at i:57296 original size:9 final size:9
Alignment explanation
Indices: 57282--57310 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
57272 ATGAAACATG
57282 GGCGGAAGA
1 GGCGGAAGA
57291 GGCGGAAGA
1 GGCGGAAGA
57300 GGCGGAAGA
1 GGCGGAAGA
57309 GG
1 GG
57311 ATTGTAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.59, T:0.00
Consensus pattern (9 bp):
GGCGGAAGA
Found at i:66149 original size:216 final size:212
Alignment explanation
Indices: 65485--66451 Score: 820
Period size: 216 Copynumber: 4.5 Consensus size: 212
65475 TCTTTTGGTC
* **
65485 TTTTTCGAACCTTCCATTCTTTGGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAA
1 TTTTT-GAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAG-TTTTCATTTT-TTAA
* * * * * *
65550 CAAGTTTTGGTCTTTGAATTAAAAACCTATTTACCTGAGAATTATTTCTCTCTTGGTTCTTGGAC
63 AAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* ** * * *
65615 GAACTTTCGTTCTTCTCAAACATTTATGAGTTCTTTTATAACTTCGGTT-CTTAAGAGTTTTC-A
128 GAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTT--GAATATTCAA
* * * *
65678 -AC-A-CAATT--GT-AAACAA
191 GACGATCCATTCCTTCGACCAA
* * ** * * * * * * * * * *
65694 CTTTTTTG-TCTTTGAATT-AC--GAACTTA-TTTATTTACGTGAAAGT--TTTTTATTTTCTAA
1 --TTTTTGAACATTCCATTCTCGGGAAATCACATCATTT-GGTCAAAATAGTTTTCATTTTTTAA
* * * ** *
65752 ACAACATTTTA-TCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTT-TCATAGTGGTTCTAG
63 A-AAC-TTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTG
** * * *
65815 GATAAACTTCCGAACATGTCAAACATTTATGAGTTCTTTTATAACTTCAGTTCCTTTAAATATTC
125 GACGAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCC-TTGAATATTC
* *
65880 AAGACGATGCATTCGTTCGACCAA
189 AAGACGATCCATTCCTTCGACCAA
* *
65904 TTTTGTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAATTTTCCATTTTGTTAA
1 TTTT-TGAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTT-CATTTT-TTAA
*
65969 AAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCTTGGAC
63 AAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
66034 GAA-TTGTCGAACTTGTCAGACATTTACGAATTCTTTTATAACTTCGGTT-CTTGAGCATATTCA
128 GAACTT-CCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTGA--ATATTCA
*
66097 AGACGATCCATTCCTTCAACCAA
190 AGACGATCCATTCCTTCGACCAA
* * * *
66120 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTATAAA
1 TTTTT-GAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTT-TCATTTTTTAAA
* * * * * *
66185 AATCTTTTGGTCTTTGAATTAAAAACTTTTTTTACTTGGGAATTGTATCTCTCTTAGTTCTTGGA
64 AA-CTTTTAGTCTTTGAATTAAAAAC-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
66250 CGAACTTCCGAACTTTTCAAACATTTATGAGTTCTTTTATAACTTCGATTCCTTTGAATATTCAT
127 CGAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCC-TTGAATATTCAA
* * *
66315 GATGACCCATTCCTTCGTCCAAA
191 GACGATCCATTCCTTCGACC-AA
** * *
66338 TTTTTGGAATTTTCCGTTCTCGGGAAATCACGTCATTTGGTCAAAATAGTTTTTCATTTTCTTAA
1 TTTTT-GAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAG-TTTTCATTTT-TTAA
* * ** * * * *
66403 CAACTTTTGGTCCATGAATTAAACACTTATTCATGTGAGAATTATTTCT
63 AAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
66452 TCTCAAACTG
Statistics
Matches: 598, Mismatches: 120, Indels: 70
0.76 0.15 0.09
Matches are distributed among these distances:
202 5 0.01
203 100 0.17
204 6 0.01
205 9 0.02
206 12 0.02
207 3 0.01
208 4 0.01
209 9 0.02
210 11 0.02
211 6 0.01
213 11 0.02
214 8 0.01
215 19 0.03
216 191 0.32
217 119 0.20
218 73 0.12
219 12 0.02
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (212 bp):
TTTTTGAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTCATTTTTTAAAAA
CTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTGAATATTCAAGACGA
TCCATTCCTTCGACCAA
Found at i:67358 original size:80 final size:80
Alignment explanation
Indices: 67217--67367 Score: 239
Period size: 80 Copynumber: 1.9 Consensus size: 80
67207 AGGAGAAATG
* * * * *
67217 CCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGAAATGACTCATTGGGTTTCTTACAATAG
1 CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGAAATGACTCATTAGCTTCCCTACAATAG
67282 TTAAAAACGAAATTC
66 TTAAAAACGAAATTC
* *
67297 CCATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAATAG
1 CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGAAATGACTCATTAGCTTCCCTACAATAG
67362 TTAAAA
66 TTAAAA
67368 TGAAATTAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (80 bp):
CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGAAATGACTCATTAGCTTCCCTACAATAG
TTAAAAACGAAATTC
Found at i:73326 original size:48 final size:48
Alignment explanation
Indices: 73272--73451 Score: 270
Period size: 48 Copynumber: 3.8 Consensus size: 48
73262 TATTTATGAT
* * * *
73272 TCATTAAGTTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
*
73320 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* * *
73368 TTATTAACTGTTTTGTTTATTAAATGCACCTTTGTTTAGTAATCTGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* *
73416 TTATTAACTGTTTTGTTTGATAAATGCATCTTTGTT
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTT
73452 AAATTCCTTG
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 122 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.52
Consensus pattern (48 bp):
TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
Found at i:78453 original size:141 final size:141
Alignment explanation
Indices: 78194--78478 Score: 543
Period size: 141 Copynumber: 2.0 Consensus size: 141
78184 CTAAGTATGG
78194 ATGTAGGCAAAGATGAAAGTTAGAATGGATAAGTAGCTTAAGGTCAAGAATGAACCAATACTATG
1 ATGTAGGCAAAGATGAAAGTTAGAATGGATAAGTAGCTTAAGGTCAAGAATGAACCAATACTATG
*
78259 AGAGAGTATTGACTCGAGACTTATAAGACACTTAAGGTGATAGAAGGTTGATAAAAAGGACCTTG
66 AGAGAGTATTGACTCGAGACTTATAAGACACTTAAGGTGATAGAAGGTAGATAAAAAGGACCTTG
*
78324 ACCCACTATTT
131 ACCCACTATCT
78335 ATGTAGGCAAAGATGAAAGTTAGAATGGATAAGTAGCTTAAGGTCAAGAATGAACCAATACTATG
1 ATGTAGGCAAAGATGAAAGTTAGAATGGATAAGTAGCTTAAGGTCAAGAATGAACCAATACTATG
*
78400 AGAGAGTATTGGCTCGAGACTTATAAGACACTTAAGGTGATAGAAGGTAGATAAAAAGGACCTTG
66 AGAGAGTATTGACTCGAGACTTATAAGACACTTAAGGTGATAGAAGGTAGATAAAAAGGACCTTG
78465 ACCCACTATCT
131 ACCCACTATCT
78476 ATG
1 ATG
78479 AAGAGATAGA
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (141 bp):
ATGTAGGCAAAGATGAAAGTTAGAATGGATAAGTAGCTTAAGGTCAAGAATGAACCAATACTATG
AGAGAGTATTGACTCGAGACTTATAAGACACTTAAGGTGATAGAAGGTAGATAAAAAGGACCTTG
ACCCACTATCT
Found at i:79202 original size:32 final size:32
Alignment explanation
Indices: 79166--79230 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
79156 AAGCCATCCA
* * *
79166 TGCATGTACTTGAAATATATTAATCAGCTAAT
1 TGCATGTACCTGAAACACATTAATCAGCTAAT
79198 TGCATGTACCTGAAACACATTAATCAGCTAAT
1 TGCATGTACCTGAAACACATTAATCAGCTAAT
79230 T
1 T
79231 AATTTCAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (32 bp):
TGCATGTACCTGAAACACATTAATCAGCTAAT
Found at i:79319 original size:39 final size:39
Alignment explanation
Indices: 79276--79374 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
79266 TTAATTTGTC
* *
79276 TCAAACTTAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAAAAACTATTAAATATGTA
*
79315 TCAAACTAAGACAGATTAAAAAAAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAAAAACTATTAAATATGTA
*
79354 TCAAACTAAGATACATTAAAA
1 TCAAACTAAGACACATTAAAA
79375 CCCTATTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAAAAACTATTAAATATGTA
Found at i:80589 original size:216 final size:216
Alignment explanation
Indices: 79728--80971 Score: 1308
Period size: 215 Copynumber: 5.8 Consensus size: 216
79718 GGCCCTTGGC
* * * *
79728 CGTACCATTTGGTTTAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAATTT
1 CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAACTT
* * ** * * **
79793 ATTTACGTGAGAATTGTTTATTTCTTGGTTCTTGGATGAACTTCCAAACTTGTTAAAAATACACG
66 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACG
* ** * *
79858 AGTTCTTTTATAACTTTGGTTCCAAAGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCA
131 AGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATCCATTCCTTCGACCAATTTTCCG
*
79923 AACATTTCATGCTCGAGAAAT
196 AACATTCCATGCTCGAGAAAT
* * * * * *
79944 CGTATTATTTGGTCTAAATAGTTTGTCATTTT-ATAAAAATATTTTGGTCTTTAAATTAAAAACT
1 CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAA-CTTTTGGTCTTTGAATTAAAAAC-
* * ** * * *
80008 TTTTTTACGTGGGAATTGTACCTCTCTTTGTTCTTGGACAAACTTCCGAACTTGACAAACATTTA
64 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTA
** * * * * *
80073 CGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTTAAGAC-AACTCGTTCCTTTGACTAATTTT
129 CGAGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATC-CATTCCTTCGACCAATTTT
* * *
80137 CCGAACCTTCCATTCTCGGGAAAT
193 CCGAACATTCCATGCTCGAGAAAT
*** * * * * *
80161 CACCTCATTTCGTCAAAATAATTTTT-ATTTTGTTAACGACTTTTGGTCTTTGAATTAAAAACTT
1 CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAACTT
* *
80225 ATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGA-AGAACTTTCC-AACTTGTTAGAA-ATTT
66 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AAC-TTCCAAACTTGTCA-AACATTT
* * * * *
80287 ATGATTTC-TTAATAACTTCGGTTCCTGAGAATATTCAACAGGATCCATTCCTTCGACCAATTTT
128 ACGAGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATCCATTCCTTCGACCAATTTT
*
80351 CCGAACATTCCATACTCGAGAAAT
193 CCGAACATTCCATGCTCGAGAAAT
* * ***
80375 CGTATCATTTGGTCTAAATAGTTTGTT-ATTTT-ATAAAAATCTTTTGGTCTTTGAATTAAATTT
1 CGTATCATTTGGTCTAAATAGTTT-TTCATTTTCTTAACAA-CTTTTGGTCTTTGAATTAAAAAC
* * * * ** * * * *
80438 TTTTTTACGTGGGAATTGTATCTATCTTTTTTCTTGGACAAGCTTTCGAACTTGTGAAACATTTA
64 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTA
* * ** *
80503 CGAGTTCTTTTATTACTTCGGTTCTTCTGAATATTCAAGATGATCCATT-CTGTCGACCAATTTT
129 CGAGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATCCATTCCT-TCGACCAATTTT
* * * **
80567 TCGAACCTTCCGTTTTCGAGAAAT
193 CCGAACATTCCATGCTCGAGAAAT
** * *
80591 CACATCATTTGGT-TAGAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACA
1 CGTATCATTTGGTCTA-AATAGTTTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAAC-
* * * **
80655 TT-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-GAAGTTCCAAACTTGTCAGACATACA
64 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTA
* * * * *
80718 CGAATTCTATTATAACTTCGGTTCCTGAGAATATTCAACACAATCCATTCCTTAGACCAATTTTC
129 CGAGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATCCATTCCTTCGACCAATTTTC
*
80783 CGAACATTCCATGCTCTAGAAAT
194 CGAACATTCCATGCTCGAGAAAT
* *
80806 CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACTT
1 CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
80871 ATTTACATGAGAATTATTTCTTTCTTGGTTCTTGTACAAACTTTCAATCTTCTCAAACATTTACG
66 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACG
** * *
80936 AGTTCTTTTATAACTTCTATTCTTGAGAGTATTCAA
131 AGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAA
80972 CACAATTGTA
Statistics
Matches: 835, Mismatches: 170, Indels: 46
0.79 0.16 0.04
Matches are distributed among these distances:
214 94 0.11
215 318 0.38
216 274 0.33
217 149 0.18
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (216 bp):
CGTATCATTTGGTCTAAATAGTTTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAACTT
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACATTTACG
AGTTCTTTTATAACTTCGGTTCCTGAGAATATTCAAGACGATCCATTCCTTCGACCAATTTTCCG
AACATTCCATGCTCGAGAAAT
Found at i:80638 original size:431 final size:430
Alignment explanation
Indices: 79733--80952 Score: 1587
Period size: 431 Copynumber: 2.8 Consensus size: 430
79723 TTGGCCGTAC
*
79733 CATTTGGTTTAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAATTTATTTA
1 CATTTGG-TTAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * *
79798 CGTGAGAATTGTTTATTTCTTGGTTCTTGGATGAACTTCCAAACTTGTTAAAAATACACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTTAGAAATACACGAATTC
* ** * * *
79863 TTTTATAACTTTGGTTCCAAAGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACAT
130 -TTTATAACTTCGGTTCCTGAGAATATTCAACACGATCCATTCCTTCGACCAATTTTCCGAACAT
* * *
79928 TTCATGCTCGAGAAATCGTATTATTTGGTCTAAATAGTTTGTCATTTTATAAAAATATTTTGGTC
194 TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTTATTTTATAAAAATATTTTGGTC
* * * *
79993 TTTAAATTAAAAACTTTTTTTACGTGGGAATTGTACCTCTCTTTGTTCTTGGACAAACTTCCGAA
259 TTTGAATTAAAAA-TTTTTTTACGTGGGAATTGTATCTATCTTTGTTCTTGGACAAACTTTCGAA
* * *
80058 CTTGACAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTTAAGACAACTCGTTC
323 CTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACAACTCATTC
* * * *
80123 CTTTGACTAATTTTCCGAACCTTCCATTCTCGGGAAATCACCT
388 CTTCGACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACAT
* * * *
80166 CATTTCGTCAAAATAATTTTT-ATTTTGTTAACGACTTTTGGTCTTTGAATTAAAAACTTATTTA
1 CATTTGGT-TAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* ** * *
80230 CGTGAGAATTGTTTCTCTCTTGGTTTTTGGAAGAACTTTCC-AACTTGTTAGAAATTTATGATTT
65 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC-TTCCAAACTTGTTAGAAATACACGAATT
* *
80294 CTTAATAACTTCGGTTCCTGAGAATATTCAACAGGATCCATTCCTTCGACCAATTTTCCGAACAT
129 CTTTATAACTTCGGTTCCTGAGAATATTCAACACGATCCATTCCTTCGACCAATTTTCCGAACAT
* *
80359 TCCATACTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTTATTTTATAAAAATCTTTTGGTC
194 TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTTATTTTATAAAAATATTTTGGTC
** * *
80424 TTTGAATTAAATTTTTTTTTACGTGGGAATTGTATCTATCTTTTTTCTTGGACAAGCTTTCGAAC
259 TTTGAATTAAAAATTTTTTTACGTGGGAATTGTATCTATCTTTGTTCTTGGACAAACTTTCGAAC
* * **
80489 TTGTGAAACATTTACGAGTTCTTTTATTACTTCGGTT-CTTCTGAATATTCAAGATGA-TCCATT
324 TTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT-TGAATATTCAAGACAACT-CATT
* * *
80552 -CTGTCGACCAATTTTTCGAACCTTCCGTTTTCGAGAAATCACAT
387 CCT-TCGACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACAT
* * *
80596 CATTTGGTTAGAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACATT-TTT
1 CATTTGGTTA-AATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAAC-TTATTT
* * *
80660 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-AGAAGTTCCAAACTTGTCAGACATACACGAATT
64 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTTAGAAATACACGAATT
* *
80724 CTATTATAACTTCGGTTCCTGAGAATATTCAACACAATCCATTCCTTAGACCAATTTTCCGAACA
129 CT-TTATAACTTCGGTTCCTGAGAATATTCAACACGATCCATTCCTTCGACCAATTTTCCGAACA
* * * *
80789 TTCCATGCTCTAGAAATCGTATCATTTGGTCTAAATAGTTT-TTCATTTTCTTAACAA-GTTTTG
193 TTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTT-ATTTT-ATAAAAATATTTTG
* * * * * * * * * *
80852 GTCTATGAATTAAAAACTTATTTACATGAGAATTATTTCTTTCTTGGTTCTTGTACAAACTTTC-
256 GTCTTTGAATTAAAAATTTTTTTACGTGGGAATTGTATCTATCTTTGTTCTTGGACAAACTTTCG
*
80916 AATCTTCTCAAACATTTACGAGTTCTTTTATAACTTC
321 AA-CTTGTCAAACATTTACGAGTTCTTTTATAACTTC
80953 TATTCTTGAG
Statistics
Matches: 684, Mismatches: 90, Indels: 28
0.85 0.11 0.03
Matches are distributed among these distances:
429 11 0.02
430 174 0.25
431 379 0.55
432 100 0.15
433 20 0.03
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (430 bp):
CATTTGGTTAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTTAGAAATACACGAATTCT
TTATAACTTCGGTTCCTGAGAATATTCAACACGATCCATTCCTTCGACCAATTTTCCGAACATTC
CATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTTATTTTATAAAAATATTTTGGTCTT
TGAATTAAAAATTTTTTTACGTGGGAATTGTATCTATCTTTGTTCTTGGACAAACTTTCGAACTT
GTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACAACTCATTCCTT
CGACCAATTTTCCGAACCTTCCATTCTCGAGAAATCACAT
Found at i:81301 original size:355 final size:356
Alignment explanation
Indices: 80632--81307 Score: 816
Period size: 355 Copynumber: 1.9 Consensus size: 356
80622 TCTTAACAAG
*
80632 TTTTGGTCTATGAATTAAAAACATTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAAGT
1 TTTTGGTCTATGAATTAAAAACATTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACT
* *
80697 TCCAAACTTGTCAGACATACACGAATTCTATTATAACTTCGGTTCCTGAGAATATTCAACACAAT
66 TCCAAACTTGTCAAACATACACGAATTCTATTATAACTTCGGTTCATGAGAATATTCAACACAAT
* *
80762 CCATTCCTTAGACCAATTTTCCGAACATTCCATGCTCTAGAAATCGTATCATTTGGTCTAAATAG
131 CCATTCCTTAGACAAATTTTCCGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAG
*
80827 TTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACTTATTTACATGAGAATTATTTCT
196 TTTTTCATTTTCTTAACAACTTTTGGTCTATGAATTAAAAACTTATTTACATGAGAATTATTTCT
* * ** * *
80892 TTCTTGGTTCTTGTACAAACTTTCAATCTTCTCAAACATTTACGAGTTCTTTTATAACTTCTATT
261 CTCTTGGCTCTTCAACAAACTTCCAATCTTCTCAAACATTTACGAGTCCTTTTATAACTTCTATT
80957 CTTGAGAGTATTCAACACAATTGTAAAAAAC
326 CTTGAGAGTATTCAACACAATTGTAAAAAAC
* * * * *
80988 TTTT-GTCTTTGAATTACAAAC-TTATTTATGTGAGAATTTTTTCTCTCTT-TTTCTTGGATGAA
1 TTTTGGTCTATGAATTAAAAACATT-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-GAA
* * * ** * * *
81050 CTTTCGAACTTGTCAAACTTTTACGAGTTCT-TGTATAACTTTGGTTGCAT-A-AAGTATTCAAG
64 CTTCCAAACTTGTCAAACATACACGAATTCTAT-TATAACTTCGGTT-CATGAGAA-TATTCAAC
* * * * ** * *
81112 ACGATCTATTCCTTCGAGAAATTTTTTGAACATTCCATGCT-TAGGAAATTGCATCATTTGTTCT
126 ACAATCCATTCCTTAGACAAATTTTCCGAACATTCCATGCTCTA-GAAATCGCATCATTTGGTCT
* * **
81176 AAATA-TTTTGTCATTTT-GTATACAACTTTTGGTCTTTGAATTAAAAACTT-TTCTATGTGAGA
190 AAATAGTTTT-TCATTTTCTTA-ACAACTTTTGGTCTATGAATTAAAAACTTATT-TACATGAGA
* * * *
81238 ATTGTTTCTCTCTTGGCTCTTCAACGAACTTCCAGA-CTTGTCAAACATTTATGAGTCCTTTTAT
252 ATTATTTCTCTCTTGGCTCTTCAACAAACTTCCA-ATCTTCTCAAACATTTACGAGTCCTTTTAT
81302 AACTTC
316 AACTTC
81308 GCCTCTTGTG
Statistics
Matches: 269, Mismatches: 41, Indels: 21
0.81 0.12 0.06
Matches are distributed among these distances:
354 23 0.09
355 239 0.89
356 7 0.03
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (356 bp):
TTTTGGTCTATGAATTAAAAACATTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACT
TCCAAACTTGTCAAACATACACGAATTCTATTATAACTTCGGTTCATGAGAATATTCAACACAAT
CCATTCCTTAGACAAATTTTCCGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAG
TTTTTCATTTTCTTAACAACTTTTGGTCTATGAATTAAAAACTTATTTACATGAGAATTATTTCT
CTCTTGGCTCTTCAACAAACTTCCAATCTTCTCAAACATTTACGAGTCCTTTTATAACTTCTATT
CTTGAGAGTATTCAACACAATTGTAAAAAAC
Found at i:81722 original size:214 final size:213
Alignment explanation
Indices: 81369--82096 Score: 802
Period size: 214 Copynumber: 3.4 Consensus size: 213
81359 TGGCAAATTG
* * * * * * **
81369 CATCGTTTGGTCTAAACAGTTTTTGATTTTGTAAACAACATTTTGTCTTTGAATGAAAATTTTAT
1 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAAC-TTTTGTCTTTGAATTAAAAACTTAT
* * ** *
81434 TTACGTGA-AATTTGTTTCTATAGTGGTTCTAGGATGAACTTCCGAACCTGTCAAACATTTACGA
65 TTACGTGAGAA-TTGTTTCTCT--TGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGA
* *
81498 GTTCTTTTATAAATTCGATTCCTTTGAATATTTAAGACGATCCATTCCTTCGACCAATTTTTCGA
127 GTTCTTTTATAACTTCGATTCCTTTGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA
81563 ACCATCCATTCTCGGGAAATCA
192 ACCATCCATTCTCGGGAAATCA
*
81585 CATCATTTGGTCAAAATTGTTTTTCATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTT-GTCTTTGAATTAAAAACTTAT
* ** * * *
81650 TTATGTGAGAACCGTTTCTCTTGGTTCTTGGACAAACTTTCGAACTTATCAAACATTTACAAGTT
65 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTT
** * * * * *
81715 CTTTTATAACTTCGATTCCTGAGAATATTCAAGTCAATCCATTCCTTTGACAAATTTTCCGAA-C
130 CTTTTATAACTTCGATTCCTTTGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACC
* * *
81779 ATTCCATGCTCGAGAAATCT
195 A-TCCATTCTCGGGAAATCA
* * * * *
81799 CATCATTTGGTCTAAATAGTTTGTCATTTT-ATAA-AAATCTTT-TCTTTGAATTAAAAAGCTTT
1 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACT-TTTGTCTTTGAATTAAAAA-CTTA
* * * * *
81861 TTTACGTG-GTAATTGTATATCTCTTAGCTCTTGGACAAGCATCCGAACTTGTAAAACATTTACG
64 TTTACGTGAG-AATTGT-T-TCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACG
* * * * *
81925 AGTTCTTTTATAACTTCAATTCCTTTGAATATTCAAGATGACCCAATCCTTCGACCAACTTTTCG
126 AGTTCTTTTATAACTTCGATTCCTTTGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* *
81990 AACCTTCCGTTCTCGGGAAATCA
191 AACCATCCATTCTCGGGAAATCA
* * * ** *
82013 CTTCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCCATGAATTAATAACTTAT
1 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTT-GTCTTTGAATTAAAAACTTAT
*
82078 TTACGTGAGAATTATTTCT
65 TTACGTGAGAATTGTTTCT
82097 TCTCAAACAT
Statistics
Matches: 422, Mismatches: 76, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
211 16 0.04
212 17 0.04
213 9 0.02
214 269 0.64
215 12 0.03
216 84 0.20
217 15 0.04
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (213 bp):
CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTGTCTTTGAATTAAAAACTTATT
TACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTC
TTTTATAACTTCGATTCCTTTGAATATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACCA
TCCATTCTCGGGAAATCA
Found at i:82769 original size:216 final size:216
Alignment explanation
Indices: 82153--83521 Score: 1361
Period size: 216 Copynumber: 6.4 Consensus size: 216
82143 TTTAACAAAA
* * * * *
82153 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTA-TTACGTGAGAATTTTTTCTATCTT-TT
1 TTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGAT
* * * * * * *
82216 TCTTGGATGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTATAACTTCGGCTGCTTA-AA
65 TCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAA
* * * ** * * ***
82280 GTATCCAAGACGATCTATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCAGGAAATTGTATCA
130 -TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCA
* ** * *
82345 TTTCGT-TTAAATAGTTTGTCATT
194 TTTGGTCAAAAAAAATTT-TCATT
* * *
82368 TTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATCTACGTGAGAATTG-TTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * * * * * *
82432 CTTCGATC-AACTTCCGAACTTGTCAAACATTTATGAGTCCTTTTATAACTTAGGCTCCTGAGTA
66 CTTGGA-CGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAA
* ** * ** * * *
82496 TATTCAAGATGATCCATTCCTTAAACCGATTTTCCAAACATTCCATGCTCTGGAAATCGCATCGT
130 TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAT
*
82561 TTGGTCAAAAAAAATTTTGATT
195 TTGGTCAAAAAAAATTTTCATT
* * * * * *
82583 TTGTAAACAATTTTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTATATTGATT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* ** ** * *
82648 CTAGGGTGAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTAGTTCCTTTGAAT
66 CTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAAT
* * *
82713 ATTCAGGACGATCCATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATT
131 ATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATT
* **
82778 TGGTCAAAATAGTTTTTCATT
196 TGGTCAAAAAAAATTTTCATT
* * *
82799 TTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * * ** * *
82864 CTTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTTGGTTCCTAAGAAT
66 CTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAAT
* * * ** * *
82929 ATTCAAGATGATTCATTCCTTCAACCAATTTTC--AAGCATTCCATGCTTAGGAAATCATATTAT
131 ATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAA-CATTCCATGCTCGGGAAATCACATCAT
* * * *
82992 TTGATC-TAAATAGTTTGT-ATT
195 TTGGTCAAAAAAAATTT-TCATT
* * *
83013 TTGTAAA-AATCTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGAGAATTGTATCTCTCTTTG-
1 TTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGA
* * *
83076 TTCTTGGACAAACTTCCGAACTTGACAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGA
64 TTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGA
* * * *
83141 ATAATT-AAGACGACCCATTCCTTCGACCAATTTTCCGAACCTTCCATTCTCGGGAAATCACATC
129 AT-ATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATC
* ** *
83205 ATTTGGTCAAAATAGTTTTTTATT
193 ATTTGGTCAAAAAAAATTTTCATT
*
83229 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * * * * * *
83294 CTTGGACAAACTTTCC-AACTTGTTAGACAATTACGAATTCTTTTATAACTTCGGTTCCTGAGAA
66 CTTGGACGAAC-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAA
* * * * * *
83358 TATTCAACACGATCAATTCCTTCGACCAATTTT-TCGAATATTCCAAGCTCGAGAAATCGCATCA
130 TATTCAAGACGATCCATTCCTTCGACCAATTTTCT-GAACATTCCATGCTCGGGAAATCACATCA
* * *
83422 TTTGGTC-TAAATAGTTTGTCATT
194 TTTGGTCAAAAAAAATTT-TCATT
* * * * * * **
83445 TTATAAA-AATCTTTTAGTGTTTGAATTAAATACTT-TTTACGTGGGAATTGTATCTCTCTTTTT
1 TTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGAT
83508 TCTTGGACGAACTT
65 TCTTGGACGAACTT
83522 TCAACTTTCT
Statistics
Matches: 945, Mismatches: 186, Indels: 47
0.80 0.16 0.04
Matches are distributed among these distances:
213 2 0.00
214 175 0.19
215 286 0.30
216 476 0.50
217 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
CTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAGAAT
ATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATT
TGGTCAAAAAAAATTTTCATT
Found at i:83166 original size:430 final size:425
Alignment explanation
Indices: 82165--83521 Score: 1627
Period size: 430 Copynumber: 3.2 Consensus size: 425
82155 GTAAACAACT
* * * * * *
82165 TTTTTGTCTTTGAATTACAAACTTATTACGTGAGAATTTTTTCTATCTTT-TTCTTGGATGAACT
1 TTTTTGTCTTTGAATTAAAAACTTTTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACGAACT
* * * * * * *
82229 TCTGAACTTGTCAGACTTTTACGAGTTCTTTTATAACTTCGGCTGC-TTAAAGTATCCAAGACGA
66 TCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAA-TAT-TAAGACGA
* * ** * * * * *** * **
82293 TCTATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCAGGAAATTGTATCATTTCGTTTAAATA
129 TCCATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
* * *
82358 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATCTACGTGAGAATTG-TTC
194 GTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * *
82422 TCTCTTGGTTCTTCGATCAACTTCCGAACTTGTCAAACATTTATGAGTCCTTTTATAACTTAGGC
259 TCTCTTGGTTCTTGGA-CAACTTCC-AACTTGTCAGACATATACGAATTCTTTTATAACTTAGGT
* * * *
82487 TCCTGAGTATATTCAAGATGATCCATTCCTTAAACCGATTTTCCAAACATTCCATGCTCTGGAAA
322 TCCTGAGAATATTCAAGATGATTCATTCCTTCAACCAATTTT-C-AACATTCCATGCT-TGGAAA
* * * * *
82552 TCGCATCGTTTGGTCAAAAAAAATTT-TGATTTTGTAAACAAT-
384 TCGCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAA-AATC
* * * * **
82594 TTTTTGTCTTTGAATTAAAAATTTATTTACATGAGAATTGT-T-TCTATATTGATTCTAGGGTGA
1 TTTTTGTCTTTGAATTAAAAACTT-TTTACGTGAGAATTGTATCTCTCT-TTG-TTCTTGGACGA
* * *
82657 ACTTTTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTAGTTCCTTTGAATATTCAGGAC
63 ACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATT-AAGAC
82722 GATCCATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAA
127 GATCCATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAA
82787 TAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTT
192 TAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTT
* * *
82852 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTTG
257 TCTCTCTTGGTTCTTGGAC-AACTTCC-AACTTGTCAGACATATACGAATTCTTTTATAACTTAG
*
82917 GTTCCTAAGAATATTCAAGATGATTCATTCCTTCAACCAATTTTCAAGCATTCCATGCTTAGGAA
320 GTTCCTGAGAATATTCAAGATGATTCATTCCTTCAACCAATTTTCAA-CATTCCATGCTT-GGAA
** * *
82982 ATCATATTATTTGATCTAAATAGTTTGT-ATTTTGTAAAAATC
383 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAATC
* * *
83024 TTTTGGTCTTTAAATTAAAAACTTTTTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACAAAC
1 TTTTTGTCTTTGAATTAAAAAC-TTTTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACGAAC
* *
83089 TTCCGAACTTGACAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATAATTAAGACGA
65 TTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAAT-ATTAAGACGA
* *
83154 CCCATTCCTTCGACCAATTTTCCGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
129 TCCATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
* *
83219 GTTTTTTATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
194 GTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
83284 TCTCTTGATTCTTGGACAAACTTTCCAACTTGTTAGACA-ATTACGAATTCTTTTATAACTTCGG
259 TCTCTTGGTTCTTGGAC-AAC-TTCCAACTTGTCAGACATA-TACGAATTCTTTTATAACTTAGG
* * * * * *
83348 TTCCTGAGAATATTCAACACGA-TCAATTCCTTCGACCAATTTTTCGAATATTCCAAGCTCGAGA
321 TTCCTGAGAATATTCAAGATGATTC-ATTCCTTCAACCAA-TTTTC-AACATTCCATGCTTG-GA
*
83412 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAAAATC
382 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAATC
* * * * *
83456 TTTTAGTGTTTGAATTAAATACTTTTTACGTGGGAATTGTATCTCTCTTTTTTCTTGGACGAACT
1 TTTTTGTCTTTGAATTAAAAACTTTTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACGAACT
83521 T
66 T
83522 TCAACTTTCT
Statistics
Matches: 802, Mismatches: 103, Indels: 44
0.85 0.11 0.05
Matches are distributed among these distances:
428 3 0.00
429 31 0.04
430 342 0.43
431 293 0.37
432 133 0.17
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (425 bp):
TTTTTGTCTTTGAATTAAAAACTTTTTACGTGAGAATTGTATCTCTCTTTGTTCTTGGACGAACT
TCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATTAAGACGATC
CATTCCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGT
TTTTCATTTTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTTTCTC
TCTTGGTTCTTGGACAACTTCCAACTTGTCAGACATATACGAATTCTTTTATAACTTAGGTTCCT
GAGAATATTCAAGATGATTCATTCCTTCAACCAATTTTCAACATTCCATGCTTGGAAATCGCATC
ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAATC
Found at i:83388 original size:646 final size:645
Alignment explanation
Indices: 82153--83521 Score: 1648
Period size: 646 Copynumber: 2.1 Consensus size: 645
82143 TTTAACAAAA
* * * * *
82153 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTA-TTACGTGAGAATTTTTTCTATCTTTTT
1 TTGTTAACAAC-TTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTTT
* ** * * ** * * *
82217 CTTGGATGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTATAACTTCGGCTGCTTAAAGT
65 CTTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTCGGCTGCCTAAAAT
* * * **
82282 ATCCAAGACGATCTATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCAGGAAATTGTATCATT
130 ATCCAAGACGATCTATTCCTTCAACAAA-TTTTTCAACATTCCATGCTCAGGAAATCATATCATT
* * *
82347 TCGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATCTACGTG
194 TCGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATCTACGTG
* *
82412 AGAATTGTTCTCTCTTGGTTCTTCGATCAACTTCCGAACTTGTCAAACATTTATGAGTCCTTTTA
259 AGAATTGTTCTCTCTTGGTTCTTCGATCAACTTCCGAACTTGACAAACATTTACGAGTCCTTTTA
* * * *
82477 TAACTTAGGCTCCTGAGTATATTCAAGATGATCCATTCCTTAAACCGATTTTCCAAACATTCCAT
324 TAACTTAGGCTCCTGAATATATTCAAGACGACCCATTCCTTAAACCAATTTTCCAAACATTCCAT
* * * * *
82542 GCTCTGGAAATCGCATCGTTTGGTCAAAAAAAATTTTGATTTTGTAAACAATTTTTTGTCTTTGA
389 GCTCGGGAAATCACATCATTTGGTCAAAAAAAATTTTGATTTTGTAAACAACTTTTGGTCTTTGA
* *** **
82607 ATTAAAAATTTATTTACATGAGAATTGTTTCTATATTGATTCTAGGGTGAACTTTTGAACTTGTC
454 ATTAAAAACTTATTTACATGAGAATTGTTTCTATATTGATTCTAGGACAAACTTTCCAACTTGTC
* * * ** ** *
82672 AAACATTTACGAGTTCTTTTATAACTTTAGTTCCTTTGAATATTCAGGACGATCCATTCCTTCGA
519 AAACAATTACGAATTCTTTTATAACTTCAGTTCCTGAGAATATTCAACACGATCAATTCCTTCGA
* ** * *
82737 CCAA-TTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTCATT
584 CCAATTTTTC-GAACATTCCAAGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATT
* * *
82799 TTGTTAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-TTT
* *
82864 CTTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTTGG-TTCCTAAGAA
65 CTTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTCGGCTGCCTAA-AA
* * * * *
82928 TATTCAAGATGAT-TCATTCCTTCAACCAA-TTTTCAAGCATTCCATGCTTAGGAAATCATATTA
129 TATCCAAGACGATCT-ATTCCTTCAACAAATTTTTCAA-CATTCCATGCTCAGGAAATCATATCA
* *
82991 TTT-GATCTAAATAGTTTGT-ATTTTGTAAA-AATCTTTTGGTCTTTAAATTAAAAACTTTTTTA
192 TTTCG-TCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTAAATTAAAAACTTATCTA
* * *
83053 CGTGAGAATTGTATCTCTCTTTGTTCTTGGA-CAAACTTCCGAACTTGACAAACATTTACGAGTT
255 CGTGAGAATTGT-TCTCTCTTGGTTCTTCGATC-AACTTCCGAACTTGACAAACATTTACGAGTC
* * ** *
83117 CTTTTATAACTTTGGTTCCTTTGAATA-ATT-AAGACGACCCATTCCTTCGACCAATTTTCCGAA
318 CTTTTATAACTTAGGCTCC--TGAATATATTCAAGACGACCCATTCCTTAAACCAATTTTCCAAA
* * * ** * *
83180 CCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTTTATTTTGTTAACAACTTTTG
381 CATTCCATGCTCGGGAAATCACATCATTTGGTCAAAAAAAATTTTGATTTTGTAAACAACTTTTG
* * * *
83245 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCC
446 GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATATTGATTCTAGGACAAACTTTCC
* * *
83310 AACTTGTTAGACAATTACGAATTCTTTTATAACTTCGGTTCCTGAGAATATTCAACACGATCAAT
511 AACTTGTCAAACAATTACGAATTCTTTTATAACTTCAGTTCCTGAGAATATTCAACACGATCAAT
* * *
83375 TCCTTCGACCAATTTTTCGAATATTCCAAGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
576 TCCTTCGACCAATTTTTCGAACATTCCAAGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTG
83440 TCATT
641 TCATT
* * * * * *
83445 TT-ATAAAAATCTTTTAGTGTTTGAATTAAATACTT-TTTACGTGGGAATTGTATCTCTCTTTTT
1 TTGTTAACAA-CTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTTT
83508 TCTTGGACGAACTT
64 TCTTGGACGAACTT
83522 TCAACTTTCT
Statistics
Matches: 611, Mismatches: 98, Indels: 29
0.83 0.13 0.04
Matches are distributed among these distances:
644 2 0.00
645 119 0.19
646 407 0.67
647 78 0.13
648 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (645 bp):
TTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTTTC
TTGGACGAACTTCCAAACTTATCAGACATACACGAATTCTTTTATAACTTCGGCTGCCTAAAATA
TCCAAGACGATCTATTCCTTCAACAAATTTTTCAACATTCCATGCTCAGGAAATCATATCATTTC
GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATCTACGTGAG
AATTGTTCTCTCTTGGTTCTTCGATCAACTTCCGAACTTGACAAACATTTACGAGTCCTTTTATA
ACTTAGGCTCCTGAATATATTCAAGACGACCCATTCCTTAAACCAATTTTCCAAACATTCCATGC
TCGGGAAATCACATCATTTGGTCAAAAAAAATTTTGATTTTGTAAACAACTTTTGGTCTTTGAAT
TAAAAACTTATTTACATGAGAATTGTTTCTATATTGATTCTAGGACAAACTTTCCAACTTGTCAA
ACAATTACGAATTCTTTTATAACTTCAGTTCCTGAGAATATTCAACACGATCAATTCCTTCGACC
AATTTTTCGAACATTCCAAGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATT
Found at i:85203 original size:107 final size:107
Alignment explanation
Indices: 85017--85227 Score: 413
Period size: 107 Copynumber: 2.0 Consensus size: 107
85007 TCATCTACCT
85017 TTGCAACCCTTTGATGCCAACCCCTAGACTAGCTTATAAGTCTAAACGAGTTGTTTTATGAACTT
1 TTGCAACCCTTTGATGCCAACCCCTAGACTAGCTTATAAGTCTAAACGAGTTGTTTTATGAACTT
85082 TGAGAGAAGAATTAAGTGGTAAAAGGCATGAGAGTGGTGCGC
66 TGAGAGAAGAATTAAGTGGTAAAAGGCATGAGAGTGGTGCGC
*
85124 TTGCAACCCTTTGATGCCAACCCTTAGACTAGCTTATAAGTCTAAACGAGTTGTTTTATGAACTT
1 TTGCAACCCTTTGATGCCAACCCCTAGACTAGCTTATAAGTCTAAACGAGTTGTTTTATGAACTT
85189 TGAGAGAAGAATTAAGTGGTAAAAGGCATGAGAGTGGTG
66 TGAGAGAAGAATTAAGTGGTAAAAGGCATGAGAGTGGTG
85228 AGCTCATTAG
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (107 bp):
TTGCAACCCTTTGATGCCAACCCCTAGACTAGCTTATAAGTCTAAACGAGTTGTTTTATGAACTT
TGAGAGAAGAATTAAGTGGTAAAAGGCATGAGAGTGGTGCGC
Found at i:87085 original size:21 final size:21
Alignment explanation
Indices: 87061--87131 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
87051 AGTGAAAATG
*
87061 AAAAAGAAAAGAAAATTGAAA
1 AAAAAGAAAAGAAAAATGAAA
*
87082 AAAAAGAAAGGAAAAATGAGAGA
1 AAAAAGAAAAGAAAAATGA-A-A
*
87105 AAAAA-ACAAAG-AAAGTGAAA
1 AAAAAGA-AAAGAAAAATGAAA
*
87125 AGAAAGA
1 AAAAAGA
87132 GAGAAAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 5 0.12
21 19 0.46
22 8 0.20
23 9 0.22
ACGTcount: A:0.73, C:0.01, G:0.20, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAGAAAAATGAAA
Found at i:87138 original size:29 final size:27
Alignment explanation
Indices: 87078--87143 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
87068 AAAGAAAATT
*
87078 GAAAAAAAAGAAAGGAAAAATGAGAGA
1 GAAAAAAAAGAAAGGAAAAATAAGAGA
*
87105 AAAAAACAAAGAAAGTGAAAAGA-AAGAGA
1 GAAAAA-AAAGAAAG-GAAAA-ATAAGAGA
87134 GAAAAGAAAA
1 GAAAA-AAAA
87144 AGATGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
27 5 0.16
28 8 0.25
29 17 0.53
30 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.03
Consensus pattern (27 bp):
GAAAAAAAAGAAAGGAAAAATAAGAGA
Found at i:87139 original size:13 final size:14
Alignment explanation
Indices: 87120--87158 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
87110 ACAAAGAAAG
87120 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
87134 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
87147 TGAAAAGGAAGA
1 TGAAAAGAAAGA
87159 AAAAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:90027 original size:79 final size:79
Alignment explanation
Indices: 89907--90054 Score: 242
Period size: 79 Copynumber: 1.9 Consensus size: 79
89897 ATTTCTTTTT
* * * * *
89907 AACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTAAAAAGGTAT
1 AACTATTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGGCAT
89972 GGCAATTTTGTTTG
66 GGCAATTTTGTTTG
*
89986 AACTATTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAGGCAT
1 AACTATTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGGCAT
90051 GGCA
66 GGCA
90055 TTTCTCCTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (79 bp):
AACTATTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGGCAT
GGCAATTTTGTTTG
Found at i:90536 original size:48 final size:46
Alignment explanation
Indices: 90499--90677 Score: 198
Period size: 48 Copynumber: 3.7 Consensus size: 46
90489 CAAGGCATTT
* *
90499 AACAAAGATGCATTTAACCAACAAAACAGTTAATAATGCA-TATTACTA
1 AACAAAGATGCATTTAACAAACAAAACAATTAATAATGCAGTA-T--TA
* * *
90547 AACAAAGATGCATTTAACAAACAAAAAAATTAATAAAGCAGATTAATA
1 AACAAAGATGCATTTAACAAACAAAACAATTAATAATGCAG--TATTA
* *
90595 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACAATTAATAATGCAG--TATTA
* *
90643 AACAAAGATGCATTTAACAAAAAAGAACACTTAAT
1 AACAAAGATGCATTTAACAAACAA-AACAATTAAT
90678 GAAGCATAAA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
48 104 0.90
49 10 0.09
51 2 0.02
ACGTcount: A:0.54, C:0.14, G:0.09, T:0.23
Consensus pattern (46 bp):
AACAAAGATGCATTTAACAAACAAAACAATTAATAATGCAGTATTA
Found at i:95017 original size:12 final size:12
Alignment explanation
Indices: 95000--95035 Score: 56
Period size: 11 Copynumber: 3.0 Consensus size: 12
94990 TTTTGCAACA
95000 GAATTTTTTTTT
1 GAATTTTTTTTT
95012 GAA-TTTTTTTT
1 GAATTTTTTTTT
95023 GAAGTTTTTTTTT
1 GAA-TTTTTTTTT
95036 CAAATCAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.50
12 3 0.14
13 8 0.36
ACGTcount: A:0.17, C:0.00, G:0.11, T:0.72
Consensus pattern (12 bp):
GAATTTTTTTTT
Found at i:95798 original size:21 final size:21
Alignment explanation
Indices: 95772--95817 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
95762 GAAGAGTCTC
95772 CTATGGTCCATTAAACAACCT
1 CTATGGTCCATTAAACAACCT
95793 CTATGGTCCATTAAACAACCT
1 CTATGGTCCATTAAACAACCT
95814 CTAT
1 CTAT
95818 AGAGTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (21 bp):
CTATGGTCCATTAAACAACCT
Found at i:96156 original size:48 final size:48
Alignment explanation
Indices: 96088--96255 Score: 221
Period size: 48 Copynumber: 3.5 Consensus size: 48
96078 AATGCAAGGA
*
96088 ATTTAACAAACAAAACAGTTAATAATGCATATTCTTAAACAAAGATGC
1 ATTTAACAAACAAAACAGTTAATAATGCAGATTCTTAAACAAAGATGC
* * *
96136 ATTTAACAAACAAAATAGTTAATAATGTAGATTAC-TAAACAAAGATAC
1 ATTTAACAAACAAAACAGTTAATAATGCAGATT-CTTAAACAAAGATGC
* ** *
96184 ATTTAACAAACAAAACACTTAATGGTGCAGATTATTAAACAAAGATGC
1 ATTTAACAAACAAAACAGTTAATAATGCAGATTCTTAAACAAAGATGC
* *
96232 ATTTAACAAAAAAAAACACTTAAT
1 ATTTAAC-AAACAAAACAGTTAAT
96256 GAAGCATAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
48 89 0.85
49 16 0.15
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.26
Consensus pattern (48 bp):
ATTTAACAAACAAAACAGTTAATAATGCAGATTCTTAAACAAAGATGC
Found at i:97409 original size:39 final size:39
Alignment explanation
Indices: 97363--97469 Score: 169
Period size: 39 Copynumber: 2.7 Consensus size: 39
97353 TTAAATAGGG
*
97363 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACAAATTTAATAGTTGT
**
97402 TTTTAATGCATCTTAGTTTGATACAAATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACAAATTTAATAGTTGT
* *
97441 TTTTAATGTGTCTAAGTTTGACACAAATT
1 TTTTAATGTGTCTTAGTTTGATACAAATT
97470 AATTTCATGT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACAAATTTAATAGTTGT
Found at i:97542 original size:32 final size:32
Alignment explanation
Indices: 97506--97603 Score: 133
Period size: 32 Copynumber: 3.1 Consensus size: 32
97496 TAGTCGAAAT
* *
97506 TAATTAGCTGATTAATGTGTTTTAGGTACATG
1 TAATTAGCTGATTAATATGTTTCAGGTACATG
* * *
97538 TAATTAGTTGACTAATATGTTTCAGGCACATG
1 TAATTAGCTGATTAATATGTTTCAGGTACATG
* *
97570 CAATTAGCTGATTAATATATTTCAGGTACATG
1 TAATTAGCTGATTAATATGTTTCAGGTACATG
97602 TA
1 TA
97604 TGGATGGCTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (32 bp):
TAATTAGCTGATTAATATGTTTCAGGTACATG
Found at i:99688 original size:51 final size:50
Alignment explanation
Indices: 99625--99762 Score: 161
Period size: 50 Copynumber: 2.7 Consensus size: 50
99615 TGCATGACTT
* *
99625 GATTTAATGATGCAAAGTTTAACTAACATGGGAGTTACATAATGCATGATAG
1 GATTT-ATGATGCAAA-TTTAACTAACATGAGAGTTACATAATACATGATAG
* * * *
99677 GATTTATGATGCATATTTAACTAACATGTA-AGTTACTTAATACATGTTAT
1 GATTTATGATGCAAATTTAACTAACATG-AGAGTTACATAATACATGATAG
* *
99727 TATTTATGATGCAAACTTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACTAA-CATGAGAGTTA
99763 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
50 51 0.69
51 18 0.24
52 5 0.07
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGAGAGTTACATAATACATGATAG
Found at i:99987 original size:17 final size:17
Alignment explanation
Indices: 99956--99988 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
99946 CAAACACTTA
99956 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
99973 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
99989 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:100869 original size:216 final size:213
Alignment explanation
Indices: 100448--101162 Score: 767
Period size: 216 Copynumber: 3.3 Consensus size: 213
100438 TTTATGTGAA
* * * * * *
100448 AGTTTTTGATTTTGTAAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTC
1 AGTTTTTCATTTTGTTAATAAC-TTTTGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTT
* ** * * *
100513 CTATAGTGGTTCTAGGATAAACTTCCAAACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGG
65 CTCTCTTGGTTCTAGGATAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGG
* ** * **
100578 TTCCTTTGAATATTCAAGATGATTCATTTGTTCGACCAA-TTTTCTGAACCTTCCATTCTCTTGA
130 TTCCTTTGAATATTCAAGACG-TTCATTCCTTCGACAAATTTTTC-GAA-CTTCCATTCTCGAGA
100642 AATCACATCATTTGGTCAAAAT
192 AATCACATCATTTGGTCAAAAT
* * *
100664 TGTTTTTCATTTTGTTAATAACTTTTAGTCTTTGAATTAAAAACTTATTAACGTGAGAATTGTTT
1 AGTTTTTCATTTTGTTAATAACTTTT-GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTT
* * *
100729 CTCTCTTGGTTCTAGGACAAACTAT-CGAACTTGTCAGACATTTATGAGTTCTTTTATAACTTCG
65 CTCTCTTGGTTCTAGGATAAACT-TCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCG
** *
100793 GTTCCTGAGAATATTCAAGACGTTACATTCCTTCGACAAATTTTTCGAACATTCCATGCTCGAGA
129 GTTCCTTTGAATATTCAAGACGTT-CATTCCTTCGACAAATTTTTCGAAC-TTCCATTCTCGAGA
* *
100858 AATCGCATCATTT-GTTATAAAT
192 AATCACATCATTTGGTCA-AAAT
* * * * **
100880 AGTTTGTCATTTT-ATACA-AATCTTTTGATCTTTGAATTAAAAACTTTTTTACTTGGGAATTGT
1 AGTTTTTCATTTTGTTA-ATAA-CTTTTG-TCTTTGAATTAAAAACTTATTTACGTGAAAATTGT
* * * * *
100943 ATCTCTCTTAGTTCTTGGATGAACTTCCGAACTTTTCAAACATTTACGAGTTCTTTTATAACTTC
63 TTCTCTCTTGGTTCTAGGATAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTC
* ** * *
101008 GGTTTCTTTGAATATTCAAGACGACCCATTCCTTCGACCAACTTTTT-GAATCTTCCATTCTCGG
128 GGTTCCTTTGAATATTCAAGACG-TTCATTCCTTCGA-CAAATTTTTCGAA-CTTCCATTCTCGA
* *
101072 GAAGTCACATCATTTGATCAAAAT
190 GAAATCACATCATTTGGTCAAAAT
* * ** * *
101096 AGTTTTTCATTTTCTTAATAAGTTTTGGTCCATGAATTAAAAACTTATTCACGTGAAAATTATTT
1 AGTTTTTCATTTTGTTAATAACTTTT-GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTT
101161 CT
65 CT
101163 TCTCAAACAT
Statistics
Matches: 414, Mismatches: 68, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
215 16 0.04
216 376 0.91
217 22 0.05
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (213 bp):
AGTTTTTCATTTTGTTAATAACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTC
TCTCTTGGTTCTAGGATAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
TCCTTTGAATATTCAAGACGTTCATTCCTTCGACAAATTTTTCGAACTTCCATTCTCGAGAAATC
ACATCATTTGGTCAAAAT
Found at i:101082 original size:432 final size:418
Alignment explanation
Indices: 100122--101162 Score: 1194
Period size: 419 Copynumber: 2.5 Consensus size: 418
100112 CGCTCACATC
* * *
100122 ACTTGTAAAACATTTGCAAGTTCTTTTATTACTTCGGTTCCTTTGAATATTCAAGATGATCCATT
1 ACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATCCATT
** *
100187 CCTTCGACCAATTTTCAAAACCTTCCGTTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTT
66 CCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTT
* * * *
100252 TATTTTCTTAACAAGTCTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT
131 CATTTTCTTAATAAGTTTTGGTCTATGAATTAAAAACTTATTAACGTGAGAATTATTTCTCTCTT
* * * * *
100317 GGTTCTTGGATAAACTTTCGATCTTGTCAAACATTTACGAGTTATTTTATAACATCGGTTCTTGA
196 GGTTCTAGGACAAACTATCGAACTTGTCAAACATTTACGAGTTATTTTATAACATCGGTTCCTGA
* * * * * * ** * * *
100382 GAGTATTCAACACAATTGTAAACAACTTTTTTGTCTTTTAATTACAAACTTATTTATTTATGTGA
261 GAATATTCAACACAATTGTAAACAAATTTTTCGACATTCAATTACAAACGCATTCATTTATATAA
* * *
100447 AAGTTTTTGATTTTGTAAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTT
326 AAGTTTGTCATTTTATAAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTT
*
100512 CCTATAGTGGTTCTAGGATAAACTTCCAA
391 CCTATA-TAGTTCTAGGATAAACTTCCAA
* *
100541 ACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATTCATT
1 ACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATCCATT
** ** *
100606 TGTTCGACCAATTTTCTGAACCTTCCATTCTCTTGAAATCACATCATTTGGTCAAAATTGTTTTT
66 CCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTT
* * * * *
100671 CATTTTGTTAATAACTTTTAGTCTTTGAATTAAAAACTTATTAACGTGAGAATTGTTTCTCTCTT
131 CATTTTCTTAATAAGTTTTGGTCTATGAATTAAAAACTTATTAACGTGAGAATTATTTCTCTCTT
* * * *
100736 GGTTCTAGGACAAACTATCGAACTTGTCAGACATTTATGAGTTCTTTTATAACTTCGGTTCCTGA
196 GGTTCTAGGACAAACTATCGAACTTGTCAAACATTTACGAGTTATTTTATAACATCGGTTCCTGA
* * ** * *
100801 GAATATTCAAGACGTTACATTCCTTCGACAAATTTTTCGAACATTCCATGCTCGAGAAATCGCA-
261 GAATATTCAACAC---A-ATT--GTAAACAAATTTTTCG-ACATTCAAT--T--ACAAA-CGCAT
* * *
100865 TCATTTGTTATAAATAGTTTGTCATTTTATACAA-ATC-TTTTGATCTTTGAATTAAAAACTTT-
314 TCATTT-ATATAAA-AGTTTGTCATTTTATA-AACAACATTTTG-TCTTTGAATGAAAAA-TTTA
* ** * * * *
100927 TTTACTTGGGAATTGTATCTCTCT-TAGTTCTTGGATGAACTTCCGA
374 TTTACGTGAAAATTGT-TC-CTATATAGTTCTAGGATAAACTTCCAA
* * * * *
100973 ACTTTTCAAACATTTACGAGTTCTTTTATAACTTCGGTTTCTTTGAATATTCAAGACGACCCATT
1 ACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATCCATT
* * *
101038 CCTTCGACCAACTTTT-TGAATCTTCCATTCTCGGGAAGTCACATCATTTGATCAAAATAGTTTT
66 CCTTCGACCAA-TTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTT
* * *
101102 TCATTTTCTTAATAAGTTTTGGTCCATGAATTAAAAACTTATTCACGTGAAAATTATTTCT
130 TCATTTTCTTAATAAGTTTTGGTCTATGAATTAAAAACTTATTAACGTGAGAATTATTTCT
101163 TCTCAAACAT
Statistics
Matches: 517, Mismatches: 85, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
419 240 0.46
422 1 0.00
423 3 0.01
425 11 0.02
426 5 0.01
428 1 0.00
430 9 0.02
431 11 0.02
432 222 0.43
433 11 0.02
434 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (418 bp):
ACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATCCATT
CCTTCGACCAATTTTCTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTTTT
CATTTTCTTAATAAGTTTTGGTCTATGAATTAAAAACTTATTAACGTGAGAATTATTTCTCTCTT
GGTTCTAGGACAAACTATCGAACTTGTCAAACATTTACGAGTTATTTTATAACATCGGTTCCTGA
GAATATTCAACACAATTGTAAACAAATTTTTCGACATTCAATTACAAACGCATTCATTTATATAA
AAGTTTGTCATTTTATAAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTT
CCTATATAGTTCTAGGATAAACTTCCAA
Found at i:101609 original size:216 final size:216
Alignment explanation
Indices: 101219--101704 Score: 570
Period size: 216 Copynumber: 2.2 Consensus size: 216
101209 TTCAAGACAA
* * *
101219 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAGAATT-TTCTCTCTCTTTT
1 TTGTAAACAAC-ATTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTCTTGT
** * * * * * *
101283 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTGTATAACTTTGGTTGCTTAAAG
65 TCTTCAATGAACATCCAAACTTGTCAAACATTTACAAGTCCTTGTATAACTTTGGCTGCTTAAAG
* ** * *
101348 AATTCAAGACAATCTATTCCTTCGAGCAATATTTCGAACATTCCATGCTCGGGAAATCACATCAT
130 AATTCAAGACAATCCATTCCTTAAACCAATATTTCGAACATTCCATGCTCGAGAAATCACATCAT
*
101413 TTGGTCTAAATAGTTTGTCATT
195 TTGGTCTAAAAAGTTTGTCATT
* *
101435 TTGTAAAAAAC-TTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTT-TCTCTCTTGG
1 TTGTAAACAACATTTT-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTCTT-G
* *
101498 TTCTTCAATGAACATCCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCT-CTTGTG
64 TTCTTCAATGAACATCCAAACTTGTCAAACATTTACAAGTCCTTGTATAACTTTGGCTGC-T-TA
* * * **
101562 AA-TATTCAAGACGATCCATTCCTTAAACCAAT-TTTCCGAATATTCCATGCTCGAGAAATTGCA
127 AAGAATTCAAGACAATCCATTCCTTAAACCAATATTT-CGAACATTCCATGCTCGAGAAATCACA
** * *
101625 TTGTTTGGTCTAAAAAGTTTTTGATT
191 TCATTTGGTCTAAAAAGTTTGTCATT
* * * *
101651 TTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTC
1 TTGTAAACAACATTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTC
101705 CTTGGTCTTT
Statistics
Matches: 227, Mismatches: 35, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
214 4 0.02
215 44 0.19
216 172 0.76
217 7 0.03
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
TTGTAAACAACATTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTCTTGTT
CTTCAATGAACATCCAAACTTGTCAAACATTTACAAGTCCTTGTATAACTTTGGCTGCTTAAAGA
ATTCAAGACAATCCATTCCTTAAACCAATATTTCGAACATTCCATGCTCGAGAAATCACATCATT
TGGTCTAAAAAGTTTGTCATT
Found at i:101905 original size:258 final size:258
Alignment explanation
Indices: 101448--101964 Score: 1025
Period size: 258 Copynumber: 2.0 Consensus size: 258
101438 TAAAAAACTT
101448 TTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACAT
1 TTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACAT
101513 CCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATC
66 CCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATC
101578 CATTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGT
131 CATTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGT
101643 TTTTGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCC
196 TTTTGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCC
101706 TTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACAT
1 TTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACAT
*
101771 CCAAACTTGTCAAACATTTACTAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATC
66 CCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATC
101836 CATTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGT
131 CATTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGT
101901 TTTTGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCC
196 TTTTGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCC
101964 T
1 T
101965 ATAGTGGTTC
Statistics
Matches: 258, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
258 258 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (258 bp):
TTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACAT
CCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATC
CATTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGT
TTTTGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCC
Found at i:102108 original size:216 final size:216
Alignment explanation
Indices: 101709--102606 Score: 900
Period size: 216 Copynumber: 4.2 Consensus size: 216
101699 TTGTTCCTTG
* * *** * *
101709 GTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACATCCA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTAGGATAAACTTCCA
* * * *
101774 AACTTGTCAAACATTTACTAGTCCTTTTATAACTTTGGCT-CTTGTGAATATTCAAGACGATCCA
66 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT-TGAATATTCAAGACGATCCA
** * * ** **
101838 TTCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAA-AGTT
130 TTCCTTCGACCAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTC-AAAATAGTT
*
101902 TTTGATTTTGTTAACAACATTTT-
194 TTTCATTTTGTTAACAA-ATTTTA
* * * * **
101925 GTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCCTATAGTGGTTCTAGGATAAACTTCCA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTAGGATAAACTTCCA
* * * *
101990 AACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGATGATTCAT
66 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGATCCAT
** * * ** *
102055 TTGTTCGACCAATTTTCTGAACCTTCCATTCTCTTGAAATCACATCATTTGGTCAAAATTGTTTT
131 TCCTTCGACCAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTT
*
102120 TCATTTTGTTAACAACTTTTA
196 TCATTTTGTTAACAAATTTTA
* * * * * *
102141 GTCTTTGAATTAAAAACTTATTAATGTGAGAATCGTTTCTCTCTTCGTTCTAGGACAAACTAT-C
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTAGGATAAACT-TCC
* * * ** *
102205 GAACTTGTCAGACATTTATGAGTTCTTTTATAACTTCGGTTCCTAAGAATATTCAAGACGATACA
65 AAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGATCCA
* * ** *
102270 TTCCTTTGACAAATTTT-TCGAACATTCCATGCTCGAGAAATTGCATCTTTTGGT-ATAAATAGT
130 TTCCTTCGACCAATTTTCT-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGT
* * *
102333 TTGTCATTTT-AT-ACAAATCTTTT
193 TTTTCATTTTGTTAACAAAT-TTTA
* * * * * * *
102356 GATCTTTGAATTAAAAACTTTTTTACTTGGGAATTGTAT-CTCTCTTAGTTATTGGATGAACTTC
1 G-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGT-TCCTCTCTTGGTTCTAGGATAAACTTC
* * * * *
102420 CGAACTTTTCAAACATTTACGAGTTCTTTTATAACTTCGGTTTCTTTGAATATTCAAGATGACCC
64 CAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGATCC
* * *
102485 ATTCCTTCGAACAACTTTTC-GAATC-TTCCATTCTCGAGAAATCACGTCATTTGGTCAAAATAG
129 ATTCCTTCGACCAA-TTTTCTGAA-CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAG
* * *
102548 TTTTTCATTTTCTTAACAAGTTTTG
192 TTTTTCATTTTGTTAACAAATTTTA
** * *
102573 GTCCATGAATTAAAAACTTATTCACGTGAAAATT
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATT
102607 ATTTCTTCTC
Statistics
Matches: 553, Mismatches: 113, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
214 5 0.01
215 16 0.03
216 511 0.92
217 16 0.03
218 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTAGGATAAACTTCCA
AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGATCCAT
TCCTTCGACCAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTT
TCATTTTGTTAACAAATTTTA
Found at i:102515 original size:432 final size:430
Alignment explanation
Indices: 101709--102601 Score: 1093
Period size: 432 Copynumber: 2.1 Consensus size: 430
101699 TTGTTCCTTG
* * * **
101709 GTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCAATGAACATCCA
1 GTCTTTGAATTAAAAACTTAT-TACGTGAGAATCGTTTCTCTCTTCGTTCTACAACAAACATCCA
* * ** *
101774 AACTTGTCAAACATTTACTAGTCCTTTTATAACTTTGGCTCTTGTGAATATTCAAGACGATCCAT
65 AACTTGTCAAACATTTACTAGTCCTTTTATAACTTCGGCTCCTAAGAATATTCAAGACGATACAT
* * * *
101839 TCCTTAAACCAATTTTCCGAATATTCCATGCTCGAGAAATTGCATTGTTTGGTCTAAAAAGTTTT
130 TCCTTAAACAAATTTTCCGAACATTCCATGCTCGAGAAATTGCATTGTTTGGTATAAAAAGTTTG
* *
101904 TGATTTTGTTAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCCTATAG
195 TCATTTTGATAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCCTATA-
* *
101969 TGGTTCTAGGATAAACTTCCAAACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGGTTCCTT
259 TAGTTATAGGATAAACTTCCAAACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGGTTCCTT
** ** * **
102034 TGAATATTCAAGATGATTCATTTGTTCGACCAATTTTCTGAACCTTCCATTCTCTTGAAATCACA
324 TGAATATTCAAGATGACCCATTCCTTCGAACAATTTTCTGAACCTTCCATTCTCGAGAAATCACA
* *
102099 TCATTTGGTCAAAATTGTTTTTCATTTTGTTAACAACTTTTA
389 TCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAACTTTTA
* **
102141 GTCTTTGAATTAAAAACTTATTAATGTGAGAATCGTTTCTCTCTTCGTTCTAGGACAAACTAT-C
1 GTCTTTGAATTAAAAACTTATT-ACGTGAGAATCGTTTCTCTCTTCGTTCTACAACAAAC-ATCC
* * * *
102205 GAACTTGTCAGACATTTA-TGAGTTCTTTTATAACTTCGGTTCCTAAGAATATTCAAGACGATAC
64 AAACTTGTCAAACATTTACT-AGTCCTTTTATAACTTCGGCTCCTAAGAATATTCAAGACGATAC
** * *
102269 ATTCCTTTGACAAATTTTTCGAACATTCCATGCTCGAGAAATTGCATCT-TTTGGTATAAATAGT
128 ATTCCTTAAACAAATTTTCCGAACATTCCATGCTCGAGAAATTGCAT-TGTTTGGTATAAAAAGT
* * **
102333 TTGTCATTTT-AT-ACAA-ATCTTTTGATCTTTGAATTAAAAACTTT-TTTACTTGGGAATTGTA
192 TTGTCATTTTGATAACAACA--TTTTG-TCTTTGAATGAAAAA-TTTATTTACGTGAAAATTGT-
* * * * * * *
102394 TCTCTCT-TAGTTATTGGATGAACTTCCGAACTTTTCAAACATTTACGAGTTCTTTTATAACTTC
252 TC-CTATATAGTTATAGGATAAACTTCCAAACTTGTCAAACACTTACAAGTTCTTTTATAACTTC
* *
102458 GGTTTCTTTGAATATTCAAGATGACCCATTCCTTCGAACAACTTTTC-GAATCTTCCATTCTCGA
316 GGTTCCTTTGAATATTCAAGATGACCCATTCCTTCGAACAA-TTTTCTGAACCTTCCATTCTCGA
* * *
102522 GAAATCACGTCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAAGTTTTG
380 GAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTCTTAACAACTTTTA
**
102573 GTCCATGAATTAAAAACTTATTCACGTGA
1 GTCTTTGAATTAAAAACTTATT-ACGTGA
102602 AAATTATTTC
Statistics
Matches: 392, Mismatches: 58, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
429 1 0.00
430 4 0.01
431 8 0.02
432 363 0.93
433 13 0.03
434 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (430 bp):
GTCTTTGAATTAAAAACTTATTACGTGAGAATCGTTTCTCTCTTCGTTCTACAACAAACATCCAA
ACTTGTCAAACATTTACTAGTCCTTTTATAACTTCGGCTCCTAAGAATATTCAAGACGATACATT
CCTTAAACAAATTTTCCGAACATTCCATGCTCGAGAAATTGCATTGTTTGGTATAAAAAGTTTGT
CATTTTGATAACAACATTTTGTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTCCTATATA
GTTATAGGATAAACTTCCAAACTTGTCAAACACTTACAAGTTCTTTTATAACTTCGGTTCCTTTG
AATATTCAAGATGACCCATTCCTTCGAACAATTTTCTGAACCTTCCATTCTCGAGAAATCACATC
ATTTGGTCAAAATAGTTTTTCATTTTCTTAACAACTTTTA
Found at i:102999 original size:216 final size:215
Alignment explanation
Indices: 102669--103850 Score: 1179
Period size: 216 Copynumber: 5.5 Consensus size: 215
102659 TTCAAGACAA
* * * *
102669 TTGTAAACAACTTTTTTGTCTTTGAATTACAAGCTTATTTACGTGAGAATT-TTCTCTCTCTT-T
1 TTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGG
* * * * * *
102732 TTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTGTATAACTTTGGTTGC-TTAA
64 TTCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGA
* * * * * *
102796 AGTATTCAAGACAATCTATTCCTTCGAGCAATATTTCAAACATTCCATTCTCGGGAAATAACATC
129 A-TATTCAAGACGATCCATTCCTTCGACCAAT-TTTCAAACATTCCATGCTCGAGAAATCACATC
*
102861 ATTTGGTCTAAATAGTTTGTCATT
192 ATTTGGTCTAAATAGTTTTTCATT
*
102885 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
** * * * * * * *
102950 CTTCAACGAACATCCAAACTTGTCAAACATTTACAAGTCCTTTTATAACTTTGGCT-CTTGTGAA
66 CTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTT-TGAA
** * ** ***
103014 TATTCAAGACGATCCATTCCTTAAACCAATTTTCCAAATATTCCATGCTCGAGAAATTGCATTGC
130 TATTCAAGACGATCCATTCCTTCGACCAATTTT-CAAACATTCCATGCTCGAGAAATCACATCAT
* *
103079 TTGGTCTAAAAAGTTTTTGATT
194 TTGGTCTAAATAGTTTTTCATT
* * * * **
103101 TTGTAAACAACATTTT-GTCTTTGAATGAAAAATTTATTTACGTGAAAATTGTTTCTATAGTGGT
1 TTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* ** * *
103165 TCTAGGATGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCAGCTCCTTTGAA
65 TCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAA
* * * *
103230 TATTCAAGACGATCCATTCCTTTGACCAATTTTCCTAACCTTCCATTCTCGAGAAATCACATCAT
130 TATTCAAGACGATCCATTCCTTCGACCAATTTT-CAAACATTCCATGCTCGAGAAATCACATCAT
*
103295 TTGGTCAAAATAGTTTTTCATT
194 TTGGTCTAAATAGTTTTTCATT
* *
103317 TTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * *
103382 CTTTGATGAACTTTCGAACTTGTCAGACATCTACAAGTTCTTTTATTACTTCGGTTCC-TGGCAA
66 CTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTG-AA
* * **
103446 TATTTAAGACG-----TTCCTTCG-----------AACATTTCATGCTCGAGAAATCGTATCATT
130 TATTCAAGACGATCCATTCCTTCGACCAATTTTCAAACATTCCATGCTCGAGAAATCACATCATT
** *
103495 TGGTCTAAATAGAATGTCATT
195 TGGTCTAAATAGTTTTTCATT
* * * * * *
103516 TTATAAA-AATCTTTTGGTCTTTGAATTAAAAACTTTTTTACATGGGAATTGTATCTCTCTTAGT
1 TTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * ** * *
103580 TCTTGGACGAACTTTCGAACTTGTCAAATATTTATGAGTTTTTTTATAACTTCGATTCCTTTGAA
65 TCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAA
* * * ** * ** * *
103645 TATTCAAGATGACCCATTCCTTCGACAAATTTTTTGAACCTTCTGTGCTCGGGTAATCACATCAT
130 TATTCAAGACGATCCATTCCTTCGACCAA-TTTTCAAACATTCCATGCTCGAGAAATCACATCAT
* *
103710 TTGATCAAAATAGTTTTTCATT
194 TTGGTCTAAATAGTTTTTCATT
* * * * * *
103732 TTCTTAACAAGTTTTGGTCTATGAATTAAAAACTTATCTACGTGAGAATTATTTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * *
103797 CTTGGATGAACTTTC-AATCTTCTCAAACATTTACGAGTTTTTTTTATAACTTCG
66 CTTGGATGAACTTTCGAA-CTTGTCAAACATTTACAAG-TTCTTTTATAACTTCG
103851 ATTCTTGAGA
Statistics
Matches: 793, Mismatches: 142, Indels: 61
0.80 0.14 0.06
Matches are distributed among these distances:
198 2 0.00
199 155 0.20
200 2 0.00
204 8 0.01
211 7 0.01
215 55 0.07
216 536 0.68
217 28 0.04
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (215 bp):
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTTGAAT
ATTCAAGACGATCCATTCCTTCGACCAATTTTCAAACATTCCATGCTCGAGAAATCACATCATTT
GGTCTAAATAGTTTTTCATT
Found at i:104727 original size:216 final size:216
Alignment explanation
Indices: 103874--105517 Score: 1548
Period size: 216 Copynumber: 7.6 Consensus size: 216
103864 TTCAACACAA
* * * * * *
103874 TTGTAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAA-AATTTTTTCTCTCTT-T
1 TTGTTAACAAC-TTTTGGTCTTTTAATTAAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGG
* * * * * * *
103937 TTC-TGGAATGAAC-TTCCGAGCTTGTCAAACTTTTACAAGTTCTTGTAAAACTT-TGGTTGCT-
64 TTCTTGG-ACGAACTTTCC-AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCT-GTTCCTG
* * * * *
103998 TAAAGTATTCAAGAC-AATCTATTCCTTCAAGCAATATTTC-AAACATTCCATGCTCGGGAAATC
126 TGAA-TATTCAAGACGAA-CCATTCCTTCGACCAAT-TTTCTGAACATTCCATGCTCGGGAAATC
104061 ACATCATTTGGTCTAAATAGTT-TGTCA-T
188 ACATCATTTGGTCTAAATAGTTCT-TCATT
* * * * *
104089 TTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
** * * * *
104154 CTTCAACAAAC-TTCCAAACTTGTCAAACATTTACGAGTCCTTTTATAACTT-TGGCTCTTGTGA
66 CTTGGACGAACTTTCC-AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCT-GTTCCTGTGA
** * * ** *
104217 ATATTCAAGAC-AATCCATTCCTTAAACCAATTTTCTGAATATTCCATGCTCGAGAAATTGCATT
129 ATATTCAAGACGAA-CCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATC
* * * * *
104281 GTTTGGCCTAAAAAGTTTTTGATT
193 ATTTGGTCTAAATAGTTCTTCATT
** * * * * ** *
104305 TTGGAAACAACATTTT-GTCTTTGAA-TAAAAATTTATTTACGTGAA-AATAGTTTCTATAGTAG
1 TTGTTAACAAC-TTTTGGTCTTTTAATTAAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGG
** * * ** *
104367 TTCTAAGATGAACTTTCGAACTTGTCAGGCA-TTACGAGTTCTTTTATAACTTC-GATTCCTTTG
64 TTCTTGGACGAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTG-TTCCTGTG
* * * *
104430 AATATTTAAGACG-ACCAATTCCTTCGACCAATTTTCCGAACCCTTCCATTCTCGGGAAATCACA
128 AATATTCAAGACGAACC-ATTCCTTCGACCAATTTTCTGAA-CATTCCATGCTCGGGAAATCACA
*
104494 TCATTTGGTCAAAATAGTTCTTCATT
191 TCATTTGGTCTAAATAGTTCTTCATT
* *
104520 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
* * * * * * * *
104585 ATTGGATGAACTTTCCAACTTGTTAGACATTTGCGAATTCTTTTATAACTTTTGTTCCTGAGAAT
66 CTTGGACGAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTGTTCCTGTGAAT
* * * * * *
104650 ATTAAACACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAATCGCATCGTT
131 ATTCAAGACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATT
*
104715 TGGTCTAAATAGTTCGTCATT
196 TGGTCTAAATAGTTCTTCATT
* * * * *
104736 TT-ATAAAAATCTTTTGGTCTTTGT-ATTAAAAACTTTTTTACGTAGGAATTGTATCTCTCTAT-
1 TTGTTAACAA-CTTTTGGTCTTT-TAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCT-TG
* * * *
104798 TTTCTTGGACGAAC-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTACTTCAGTTCCTTT
63 GTTCTTGGACGAACTTTCC-AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTGTTCCTGT
* * * * * *
104862 GAATATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACCTTCCGTTCTCGGGAAATCACAT
127 GAATATTCAAGACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACAT
* *
104927 CATTTGGTCAAAATAGTTTTTCATT
192 CATTTGGTCTAAATAGTTCTTCATT
* * *
104952 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTTTTTACATAAAAATTGTTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
* * * * * *
105017 ATTGGATGAACTTTCCAACTTGT-TAACATTTGA-GAATTCTTTTATAACTTATGTTCCTGAGAA
66 CTTGGACGAACTTTCCAACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTCTGTTCCTGTGAA
* * * * * *
105080 TATT-AAAACGACCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAATCGCATCGT
130 TATTCAAGACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAT
*
105144 TTGGTCTAAATAGTTCGTCATT
195 TTGGTCTAAATAGTTCTTCATT
* * * * * *
105166 TT-ATAAAAATCTTTTGGTCTTTGT-ATTAAAAACTTTTTTGCGTACGAATTGTATCTCTCTAT-
1 TTGTTAACAA-CTTTTGGTCTTT-TAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCT-TG
* * * *
105228 TTTCTTGGACGAAC-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTACTTCGGTTCCTTT
63 GTTCTTGGACGAACTTTCC-AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTGTTCCTGT
* * * * * *
105292 GAATATTCAAGATGATCCATTCCTTCAACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACAT
127 GAATATTCAAGACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACAT
* *
105357 CATTTGGTCAAAATAGTTTTTCATT
192 CATTTGGTCTAAATAGTTCTTCATT
* * * * * * *
105382 TTCTTAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTT
1 TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
* * * * * * *
105447 CTTGGACAAACTTTCGATCTTCTCAATCATTTACGAGTTCTTTTATAACTTCTGTTCTTGAGAAT
66 CTTGGACGAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTGTTCCTGTGAAT
105512 ATTCAA
131 ATTCAA
105518 CACAATTGTA
Statistics
Matches: 1164, Mismatches: 224, Indels: 81
0.79 0.15 0.06
Matches are distributed among these distances:
213 13 0.01
214 239 0.21
215 306 0.26
216 522 0.45
217 80 0.07
218 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (216 bp):
TTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACTTTCCAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCTGTTCCTGTGAAT
ATTCAAGACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATT
TGGTCTAAATAGTTCTTCATT
Found at i:105238 original size:430 final size:428
Alignment explanation
Indices: 103886--105514 Score: 1992
Period size: 430 Copynumber: 3.8 Consensus size: 428
103876 GTAAACAACT
* * * * * * * *
103886 TTTTTGTCTTTGAATTACAAACTTATTTACGTGAAAATTTTTTCTCTCT-TTTTC-TGGAATGAA
1 TTTTGGTCTTTGTATTAAAAACTTTTTTACGT-AGAATTGTATCTCTCTATTTTCTTGG-ACGAA
* * * * * * * *
103949 CTTCCGAGCTTGTCAAACTTTTACAAGTTCTTGTAAAACTTTGGTTGC-TTAAAGTATTCAAGAC
64 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAA-TATTCAAGAC
* * * * * * * *
104013 AATCTATTCCTTCAAGCAATATTTCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
128 GATCCATTCCTTCAACCAATTTTTCGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAA
* * * * * * *
104078 TAGTTTGTCA-TTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTT
193 TAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAAAATTGTT
* ** * * *
104142 TCTCTCTTGGTTCTTCAACAAAC-TTCCAAACTTGTCAAACATTTACGAGTCCTTTTATAACTTT
258 TCTCTCTTGGTTATTGGACAAACTTTCC-AACTTGT-TAACATTTACGAATTCTTTTATAACTTT
* * * * ** * *
104206 GGCTCTTGTGAATATTCAAGAC-AATCCATTCCTTAAACCAATTTTCTGAATATTCCATGCTCGA
321 -GTTCCTGAGAATATT-AAAACGAA-CCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGA
* * * * ** * **
104270 GAAATTGCATTGTTTGGCCTAAAAAGTTTTTGATTTTGGAAACAA-C
383 GAAATCGCATCGTTTGGTCTAAATAGTTCGTCATTTTATAAA-AATC
* * * * * ** *
104316 ATTTT-GTCTTTG-AATAAAAA-TTTATTTACGTGAAAATAGT-T-TCTATAGTAGTTCTAAGAT
1 -TTTTGGTCTTTGTATTAAAAACTTT-TTTACGT-AGAATTGTATCTCTCTA-T-TTTCTTGGAC
* ** * *
104376 GAACTTTCGAACTTGTCAGGCA-TTACGAGTTCTTTTATAACTTCGATTCCTTTGAATATTTAAG
61 GAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAG
* *
104440 ACGA-CCAATTCCTTCGACCAATTTTCCGAACCCTTCCATTCTCGGGAAATCACATCATTTGGTC
126 ACGATCC-ATTCCTTCAACCAATTTTTCGAA-CCTTCCATTCTCGGGAAATCACATCATTTGGTC
* *
104504 AAAATAGTTCTTCATTTTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAAT
189 AAAATAGTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAAAAT
** *
104569 TGTTTCTCTCTTGGTTATTGGATGAACTTTCCAACTTGTTAGACATTTGCGAATTCTTTTATAAC
254 TGTTTCTCTCTTGGTTATTGGACAAACTTTCCAACTTGTTA-ACATTTACGAATTCTTTTATAAC
104634 TTTTGTTCCTGAGAATATTAAACACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTT
318 -TTTGTTCCTGAGAATATTAAA-ACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTT
104699 GAGAAATCGCATCGTTTGGTCTAAATAGTTCGTCATTTTATAAAAATC
381 GAGAAATCGCATCGTTTGGTCTAAATAGTTCGTCATTTTATAAAAATC
104747 TTTTGGTCTTTGTATTAAAAACTTTTTTACGTAGGAATTGTATCTCTCTATTTTCTTGGACGAAC
1 TTTTGGTCTTTGTATTAAAAACTTTTTTACGTA-GAATTGTATCTCTCTATTTTCTTGGACGAAC
* * *
104812 TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTACTTCAGTTCCTTTGAATATTCAAGATGA
65 TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGA
* * *
104877 TCCATTCCTTCGACCAATTTTTTGAACCTTCCGTTCTCGGGAAATCACATCATTTGGTCAAAATA
130 TCCATTCCTTCAACCAATTTTTCGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
* *
104942 GTTTTTCATTTTGTTAACAACTTTTGGTCTTTTAATTAAAAACTTTTTTACATAAAAATTGTTTC
195 GTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAAAATTGTTTC
**
105007 TCTCTTGGTTATTGGATGAACTTTCCAACTTGTTAACATTTGA-GAATTCTTTTATAACTTATGT
260 TCTCTTGGTTATTGGACAAACTTTCCAACTTGTTAACATTT-ACGAATTCTTTTATAACTT-TGT
*
105071 TCCTGAGAATATTAAAACGACCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAAT
323 TCCTGAGAATATTAAAACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAAT
105136 CGCATCGTTTGGTCTAAATAGTTCGTCATTTTATAAAAATC
388 CGCATCGTTTGGTCTAAATAGTTCGTCATTTTATAAAAATC
*
105177 TTTTGGTCTTTGTATTAAAAACTTTTTTGCGTACGAATTGTATCTCTCTATTTTCTTGGACGAAC
1 TTTTGGTCTTTGTATTAAAAACTTTTTTACGTA-GAATTGTATCTCTCTATTTTCTTGGACGAAC
* *
105242 TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTACTTCGGTTCCTTTGAATATTCAAGATGA
65 TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGA
*
105307 TCCATTCCTTCAACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
130 TCCATTCCTTCAACCAATTTTTCGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATA
* * * * * * * *
105372 GTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGTGAGAATTATTTC
195 GTTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAAAATTGTTTC
* * * * * *
105437 TCTCTTGGTTCTTGGACAAACTTTCGATCTTCTCAATCATTTACGAGTTCTTTTATAACTTCTGT
260 TCTCTTGGTTATTGGACAAACTTTCCAACTTGTTAA-CATTTACGAATTCTTTTATAACTT-TGT
*
105502 TCTTGAGAATATT
323 TCCTGAGAATATT
105515 CAACACAATT
Statistics
Matches: 1056, Mismatches: 115, Indels: 54
0.86 0.09 0.04
Matches are distributed among these distances:
427 4 0.00
428 4 0.00
429 71 0.07
430 450 0.43
431 264 0.25
432 189 0.18
433 67 0.06
434 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (428 bp):
TTTTGGTCTTTGTATTAAAAACTTTTTTACGTAGAATTGTATCTCTCTATTTTCTTGGACGAACT
TCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTGAATATTCAAGACGAT
CCATTCCTTCAACCAATTTTTCGAACCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAG
TTTTTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAAAATTGTTTCT
CTCTTGGTTATTGGACAAACTTTCCAACTTGTTAACATTTACGAATTCTTTTATAACTTTGTTCC
TGAGAATATTAAAACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAATCGC
ATCGTTTGGTCTAAATAGTTCGTCATTTTATAAAAATC
Found at i:105327 original size:646 final size:645
Alignment explanation
Indices: 103877--105523 Score: 1809
Period size: 646 Copynumber: 2.5 Consensus size: 645
103867 AACACAATTG
* * * * * * *
103877 TAAACAACTTTTTTGTCTTTGAATTACAAACTTATTTACGTGAAAATTTTTTCTCTCTTTTTC-T
1 TAAA-AAC-TTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAATTGTATCTCTCTTTTTCTT
* * * * * * *
103941 GGAATGAACTTCCGAGCTTGTCAAACTTTTACAAGTTCTTGTAAAACTTTGGTTGC-TTAAAGTA
64 GG-ATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAA-TA
* * * *
104005 TTCAAGACAATCTATTCCTTCAAGCAATATTTC-AAACATTCCATGCTCGGGAAATCACATCATT
127 TTCAAGACGATCCATTCCTTCAACCAAT-TTTCTGAACATTCCATGCTCGGGAAATCACATCATT
* *
104069 TGGTCTAAATAGTTTGTCATTTGTA-AACAACATTTGGTCTTTGAATTAAAAACTTATCTACGTG
191 TGGTCTAAATAGTTTGTCATTT-TATAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
** * *
104133 AGAATTGTTTCTCTCTTGGTTCTTCAACAAACTTCCAAACTTGTCAAACATTTACGAGTCCTTTT
255 AGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTT
** * *
104198 ATAACTTTGGCTCTTGTGAATATTCAAGACAATCCATTCCTTAAACCAATTTTCTGAATATTCCA
320 ATAACTTCAGTTCTTGTGAATATTCAAGACAATCCATTCCTTAAACCAATTTTCTGAACATTCCA
** ** *
104263 TGCTCGAGAAATTGCATTGTTTGGCCTAAAAAGTTTTTGATTTTGGAAACAACATTTTGTCTTTG
385 TGCTCGAGAAATCACATCATTTGGCCTAAAAAGTTTTTCATTTTGGAAACAACATTTTGTCTTTG
* * * *
104328 AATAAAAATTTATTTACGTGAAAATAGTTTCTATAGTAGTTCTAAGATGAACTTTCGAACTTGTC
450 AATAAAAATTTATTTACATAAAAATAGTTTCTATAGTAGTTATAAGATGAACTTTCCAACTTGTC
* * ** *
104393 AGGCATTACGAGTTCTTTTATAACTTCGATTCCTTTGAATATTTAAGACGACCAATTCCTTCGAC
515 AGACATTACGAATTCTTTTATAACTTCGATTCCTGAGAATATTTAAAACGACCAATTCCTTCGAC
* * * *
104458 CAATTTTCCGAACCCTTCCATTCTCGGGAAATCACATCATTTGGTCAAAATAGTTCTTCATTTTG
580 CAATTTTCCGAACCATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTCGTCATTTTG
*
104523 T
645 A
* * * *
104524 TAACAACTTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAATTGTTTCTCTCTTGGTTATTG
1 TAAAAACTTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAATTGTATCTCTCTT-TTTCTTG
* * * * * **
104589 GATGAACTTTCC-AACTTGTTAGACATTTGCGAATTCTTTTATAACTTTTGTTCCTGAGAATATT
65 GATGAAC-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATT
* * * * * * * *
104653 AAACACGAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTTGAGAAATCGCATCGTTTGG
129 CAAGACGATCCATTCCTTCAACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGG
* * * *
104718 TCTAAATAGTTCGTCATTTTATAAAAATCTTTTGGTCTTTGTATTAAAAACTTTTTTACGT-AGG
194 TCTAAATAGTTTGTCATTTTATAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-G
* * *
104782 AATTGTATCTCTCTAT-TTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTA
257 AATTGTTTCTCTCT-TGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTA
* ** ** * * *
104846 TTACTTCAGTTCCTT-TGAATATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACCTTCCG
321 TAACTTCAGTT-CTTGTGAATATTCAAGACAATCCATTCCTTAAACCAATTTTCTGAACATTCCA
* * * **
104910 TTCTCGGGAAATCACATCATTTGGTC-AAAATAGTTTTTCATTTTGTTAACAAC-TTTTGGTCTT
385 TGCTCGAGAAATCACATCATTTGGCCTAAAA-AGTTTTTCATTTTGGAAACAACATTTT-GTCTT
* * * ** * **
104973 TTAATTAAAAACTTT-TTTACATAAAAATTGTTTCTCTCTTGGTTATTGGATGAACTTTCCAACT
448 TGAA-TAAAAA-TTTATTTACATAAAAATAGTTTCTATAGTAGTTATAAGATGAACTTTCCAACT
* * *
105037 TGTTA-ACATTTGA-GAATTCTTTTATAACTTATG-TTCCTGAGAATA-TTAAAACGACCCATTC
511 TGTCAGACA-TT-ACGAATTCTTTTATAACTT-CGATTCCTGAGAATATTTAAAACGACCAATTC
* * * * *
105098 CTTCGACCAATTTTCTGAA-CATTCCATGCTTGAGAAATCGCATCGTTTGGTCTAAATAGTTCGT
573 CTTCGACCAATTTTCCGAACCATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTCGT
105162 CATTTT-A
638 CATTTTGA
* * * **
105169 TAAAAATCTTTTGGTCTTTGT-ATTAAAAACTTTTTTGCGTACGAATTGTATCTCTCTATTTTCT
1 TAAAAA-CTTTTGGTCTTT-TAATTAAAAACTTATTTACATAAAAATTGTATCTCTCT-TTTTCT
* * *
105233 TGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATTACTTCGGTTCCTTTGAATAT
63 TGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATAT
* * * *
105298 TCAAGATGATCCATTCCTTCAACCAATTTTTTGAACCTTCCATTCTCGGGAAATCACATCATTTG
128 TCAAGACGATCCATTCCTTCAACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * * *
105363 GTCAAAATAGTTTTTCATTTTCTTAACAAGTTTTGGTCTATGAATTAAAAACATATTTACGTGAG
193 GTCTAAATAGTTTGTCATTTT-ATAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
105428 AATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGATCTTCTCAATCATTTACGAGTTCTTTTAT
257 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTAT
* * *
105493 AACTTCTGTTCTTGAGAATATTCAACACAAT
322 AACTTCAGTTCTTGTGAATATTCAAGACAAT
105524 TGTAAACAAC
Statistics
Matches: 820, Mismatches: 155, Indels: 51
0.80 0.15 0.05
Matches are distributed among these distances:
645 63 0.08
646 439 0.54
647 233 0.28
648 80 0.10
649 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (645 bp):
TAAAAACTTTTGGTCTTTTAATTAAAAACTTATTTACATAAAAATTGTATCTCTCTTTTTCTTGG
ATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAATATTCA
AGACGATCCATTCCTTCAACCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
TAAATAGTTTGTCATTTTATAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
GTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
TCAGTTCTTGTGAATATTCAAGACAATCCATTCCTTAAACCAATTTTCTGAACATTCCATGCTCG
AGAAATCACATCATTTGGCCTAAAAAGTTTTTCATTTTGGAAACAACATTTTGTCTTTGAATAAA
AATTTATTTACATAAAAATAGTTTCTATAGTAGTTATAAGATGAACTTTCCAACTTGTCAGACAT
TACGAATTCTTTTATAACTTCGATTCCTGAGAATATTTAAAACGACCAATTCCTTCGACCAATTT
TCCGAACCATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTCGTCATTTTGA
Found at i:106112 original size:216 final size:213
Alignment explanation
Indices: 105523--106777 Score: 1197
Period size: 216 Copynumber: 5.8 Consensus size: 213
105513 TTCAACACAA
* * * * * * * *
105523 TTGTAAACAACTTTTTTGTCTTTGAACTACAAACATATTTACGTGATAATTTTTTTCTCTCTT-T
1 TTGTAAACAAC--TTTTGTCTTTGAATTAAAAACTTATTTATGTGA-AAATTGTTTCTATCTTGG
* * * * *
105587 TTCTTGGATGAACTTCTGAACTTGTCAAACTTTTATGAGTTTTTTTATAACTTCGGTTGCTTA-A
63 TTC-TAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTAGA
* * *
105651 AGTATTCAAGACGA-CTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATC
126 A-TATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATC
* * *
105715 ATTTTGTCT-AAATAGTTTGTAATT
190 ATTTGGTCTAAAAT-GTTTTTCATT
* * * * *
105739 TTGTAAACAACTTTTGGCCTTTGAATTAAAAA-TTATTTATGT-TAGATTGTTTCTTTCTTGATT
1 TTGTAAACAACTTTT-GTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTT
** * * ** *
105802 CTTAGACGAACTTCCAAAGTTGTCAAACATTTCCGAGGCCTTTTATAACTTCGGCTCTTGAGAAT
65 C-TAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTT-AGAAT
* ** * * *
105867 ATTCAAGATGATCCATTCCTTAAACCAATTTTCTGAATATTCGATGCTCGGGAAATTGCATCATT
128 ATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATT
*
105932 TGGTCTAAAATGTTTTTTTATT
193 TGGTCTAAAATG-TTTTTCATT
* * *
105954 TTGTAAACAACATTTTGTCTTTGAATGAAAAATTTATTTATGTGAAAATTGTTTCTATATTGGTT
1 TTGTAAACAAC-TTTTGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTT
* * *
106019 CTAGAATGAACTT-TCGAACTTGTCAAACATTTACGAGTTC-ATTATAACTTCGGTTCCTTTGAA
65 CTAG-ACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTAGAA
* * * * **
106082 TATTCAAGACGATCCATTTCTTCGACCAATTTTTTGAACCTTCCATTCTCGAGAAATCACATCAT
127 TATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCAT
*
106147 TT--TCTCAAAATAATTTTTCATT
192 TTGGTCT-AAAAT-GTTTTTCATT
* * * * * * * *
106169 TAGTTAACAACTTTTAGTTTTTGAATTAAAAACATATCTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTT-GTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTT
* ** * * * * *
106234 CTTCGACGAACTTCCAAACTTATCAAAAATTTACGAGTCCTTTTATAACTTCAGCTCTTGAGAAT
65 C-TAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTT-AGAAT
* ** * * *
106299 ATTCAAGACGATCCATTCCATAAAACAATTTTTTGAATATTCCATGCTCGGGAAATTGCATCGTT
128 ATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATT
* *
106364 TGGTCTAAAAAGTTTTTGATT
193 TGGTCTAAAATGTTTTTCATT
* * ** * **
106385 TAGTAAACAACATTTTGTCTTTGAATGAAAATTTTATTTATGTGAAAATAGTTTCTATAGTGGTT
1 TTGTAAACAAC-TTTTGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTT
* * * * *
106450 CTAAGATGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTTTAACTTTGGTTCCTTTGAAA
65 CT-AGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTAGAAT
* * * * * * *
106515 ATTAAAGATGATCCCTTACATCGACCAATTTTTTGAATC-TTCCATTCTCGGGAAATTTCATCAT
128 ATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAA-CATTCCATGCTCGGGAAATTGCATCAT
*
106579 CTGGTC-AAAATAGTTTTTCATT
192 TTGGTCTAAAAT-GTTTTTCATT
* * * * * *
106601 TTGTTAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTCGTT
1 TTGTAAACAAC-TTTTGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTT
* *
106666 CTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTAAAACTTCGG-T-TTAGAGAG
65 C-TAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTAGA-A-
** *
106729 TATTCAAGACGATCTGTTCTTTCGACCAATTTTTTGAACATTCCATGCT
127 TATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCT
106778 TAAGAAATCG
Statistics
Matches: 838, Mismatches: 170, Indels: 63
0.78 0.16 0.06
Matches are distributed among these distances:
212 15 0.02
213 62 0.07
214 74 0.09
215 187 0.22
216 438 0.52
217 59 0.07
218 3 0.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (213 bp):
TTGTAAACAACTTTTGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTATCTTGGTTC
TAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTAGAATATT
CAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGG
TCTAAAATGTTTTTCATT
Found at i:106338 original size:432 final size:430
Alignment explanation
Indices: 105593--106742 Score: 1531
Period size: 432 Copynumber: 2.7 Consensus size: 430
105583 CTTTTTCTTG
* * * * *
105593 GATGAACTTCTGAACTTGTCAAACTTTTATGAGTTTTTTTATAACTTCGGTTGC-TTAAAGTATT
1 GATGAACTTCTGAACTTGTCAAACATTTACGAG-TTCTTTATAACTTCGGTTCCTTTGAA-TATT
* * * * * * *
105657 CAAGACGA-CTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTTG
64 CAAGACGATCCATTACTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATTACATCATTTTG
* * * * * * * *
105721 TCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAA-TTATTTATGTTAG-
129 TCAAAATAGTTTTTCATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * *
105784 ATTGTTTCTTTCTTGATTCTTAGACGAACTTCCAAAGTTGTCAAACATTTCCGAGGCCTTTTATA
194 ATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACATTTACGAGTCCTTTTATA
* * * *
105849 ACTTCGGCTCTTGAGAATATTCAAGATGATCCATTCCTTAAACCAATTTTCTGAATATTCGATGC
259 ACTTC-GCTCTTGAGAATATTCAAGACGATCCATTCCATAAAACAATTTTCTGAATATTCCATGC
* * *
105914 TCGGGAAATTGCATCATTTGGTCTAAAATGTTTTTTTATTTTGTAAACAACATTTTGTCTTTGAA
323 TCGGGAAATTGCATCATTTGGTCTAAAAAG-TTTTTGATTTAGTAAACAACATTTTGTCTTTGAA
* *
105979 TGAAAAATTTATTTATGTGAAAATTGTTTCTATATTGGTTCT-A
387 TGAAAAATTTATTTATGTGAAAATAGTTTCTATAGTGGTTCTAA
*
106022 GAATGAACTT-TCGAACTTGTCAAACATTTACGAGTTCATTATAACTTCGGTTCCTTTGAATATT
1 G-ATGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTATAACTTCGGTTCCTTTGAATATT
* * * *
106086 CAAGACGATCCATTTCTTCGACCAATTTTTTGAACCTTCCATTCTCGAGAAATCACATCATTTTC
64 CAAGACGATCCATTACTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATTACATCATTTTG
* * * * *
106151 TCAAAATAATTTTTCATTTAGTTAACAACTTTTAGTTTTTGAATTAAAAACATATCTACGTGAGA
129 TCAAAATAGTTTTTCATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * *
106216 ATTGTTTCTCTCTTGGTTCTTCGACGAACTTCCAAACTTATCAAAAATTTACGAGTCCTTTTATA
194 ATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACATTTACGAGTCCTTTTATA
*
106281 ACTTCAGCTCTTGAGAATATTCAAGACGATCCATTCCATAAAACAATTTTTTGAATATTCCATGC
259 ACTTC-GCTCTTGAGAATATTCAAGACGATCCATTCCATAAAACAATTTTCTGAATATTCCATGC
*
106346 TCGGGAAATTGCATCGTTTGGTCTAAAAAGTTTTTGATTTAGTAAACAACATTTTGTCTTTGAAT
323 TCGGGAAATTGCATCATTTGGTCTAAAAAGTTTTTGATTTAGTAAACAACATTTTGTCTTTGAAT
*
106411 GAAAATTTTATTTATGTGAAAATAGTTTCTATAGTGGTTCTAA
388 GAAAAATTTATTTATGTGAAAATAGTTTCTATAGTGGTTCTAA
* * * *
106454 GATGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTTTAACTTTGGTTCCTTTGAAAATTA
1 GATGAACTTCTGAACTTGTCAAACATTTACGAGTTC-TTTATAACTTCGGTTCCTTTGAATATTC
* * * * * * *
106519 AAGATGATCCCTTACATCGACCAATTTTTTGAATCTTCCATTCTCGGGAAATTTCATCATCTGGT
65 AAGACGATCCATTACTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATTACATCATTTTGT
*
106584 CAAAATAGTTTTTCATTTTGTTAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAA
130 CAAAATAGTTTTTCATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * ** * *
106649 TAGTTTCTCTCTTCGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTAAAA
195 TTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACATTTACGAGTCCTTTTATAA
* *
106714 CTTCGGT-TTAGAGAGTATTCAAGACGATC
260 CTTCGCTCTT-GAGAATATTCAAGACGATC
106743 TGTTCTTTCG
Statistics
Matches: 628, Mismatches: 83, Indels: 18
0.86 0.11 0.02
Matches are distributed among these distances:
429 31 0.05
430 121 0.19
431 133 0.21
432 343 0.55
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (430 bp):
GATGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTATAACTTCGGTTCCTTTGAATATTCA
AGACGATCCATTACTTCGACCAATTTTTTGAACCTTCCATTCTCGGGAAATTACATCATTTTGTC
AAAATAGTTTTTCATTTTGTTAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACATTTACGAGTCCTTTTATAAC
TTCGCTCTTGAGAATATTCAAGACGATCCATTCCATAAAACAATTTTCTGAATATTCCATGCTCG
GGAAATTGCATCATTTGGTCTAAAAAGTTTTTGATTTAGTAAACAACATTTTGTCTTTGAATGAA
AAATTTATTTATGTGAAAATAGTTTCTATAGTGGTTCTAA
Found at i:107826 original size:216 final size:212
Alignment explanation
Indices: 107238--107911 Score: 771
Period size: 216 Copynumber: 3.1 Consensus size: 212
107228 TGTTTAAATT
* * *
107238 AAACATTTACGAGTTCTTTTATAACGTCGGTTCCTTTGAATATTCAAGACGACCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCAGTTCCTTTGAATATTCAAGACGAACCATTCCTTCGA
* * * * *
107303 CAAGTTTTTTGAACCTTCCATTCACGAGAAATCACATCATTTGGACAAAATAGTTTTTCATTTTG
66 CAA--TTTTCGAACCTTTCATTCTCGAGAAATCAGATCATTTGGTCAAAATAG-TTTTCATTTT-
* * * *
107368 TTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTGAAAATTGTTTCTCTCTTTGTTCAT
127 TTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTATTCTT
** * *
107433 GGACGAACTTTCCAATTTGTC
192 GGACGAACTTTTGAACTTGTA
* * ** * *
107454 AGACATTTACGAATTCTTTTTATAACTTCAGTTCCTGAGAATATTCAAGACGATCTATTCCTTCG
1 AAACATTTACGAGTTC-TTTTATAACTTCAGTTCCTTTGAATATTCAAGACGAACCATTCCTTCG
* * * * *
107519 TCCAATTTTCCGAACATTTCATGCTCGAGAAAT-TGCATCATTTGGTCTAAATAGTTTGTCATTT
65 -ACAATTTT-CGAACCTTTCATTCTCGAGAAATCAG-ATCATTTGGTCAAAATAGTTT-TCATTT
* * * * *
107583 TATAAAAATCTTTCGGTCTTTGAATTAAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTTTTT
126 TTTAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTTATT
107647 CTTGGACGAACTTTTGAACTTGTA
189 CTTGGACGAACTTTTGAACTTGTA
* *
107671 AAACATTTACGAGTTCTTCTATAACTTCAGTTCCTTTGAATATGCAAGACGAACCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCAGTTCCTTTGAATATTCAAGACGAACCATTCCTTCGA
* * * *
107736 GCAACTTTTCGAACCTTTCGTTCTCGAGAAATCAGATCGTTTGTTCAAAATAGACTTTCATTTTC
66 -CAA-TTTTCGAACCTTTCATTCTCGAGAAATCAGATCATTTGGTCAAAATAG-TTTTCATTTT-
* * *
107801 TTAACAACTTTTGGT-TTATGAATTAAAAACTTATTTACGTGAGAGTTATTTCTCTCTTGATTCT
127 TTAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTATTCT
* * *
107865 TGGACGAACTTTTGATCTTCTG
191 TGGACGAACTTTTGAACTTGTA
107887 AAACATTTACGAGTT-TTTTCATAAC
1 AAACATTTACGAGTTCTTTT-ATAAC
107912 ATCGGTACTT
Statistics
Matches: 384, Mismatches: 59, Indels: 30
0.81 0.12 0.06
Matches are distributed among these distances:
215 5 0.01
216 199 0.52
217 177 0.46
218 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (212 bp):
AAACATTTACGAGTTCTTTTATAACTTCAGTTCCTTTGAATATTCAAGACGAACCATTCCTTCGA
CAATTTTCGAACCTTTCATTCTCGAGAAATCAGATCATTTGGTCAAAATAGTTTTCATTTTTTAA
CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTATTCTTGGAC
GAACTTTTGAACTTGTA
Found at i:108205 original size:572 final size:574
Alignment explanation
Indices: 107381--108478 Score: 1419
Period size: 572 Copynumber: 1.9 Consensus size: 574
107371 ACAACTTTTG
* ** * *
107381 GTCTTTGAATTAAAAACTTATTTAAGTGAAAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCC
1 GTCTTTGAATTAAAAACTTATTTAAGTGAAAATTGTGTCTCTCTAGGTTCATGGACAAACTTTCA
* * *
107446 AATTTGTCAGACATTTACGAATTCTTTTTATAACTTCAGTTCCTGAGAATATTCAAGACGATCTA
66 AACTTGGCAGACATTTACGAATTCTTTTTATAACTCCAGTTCCTGAGAATATTCAAGACGATCTA
* * * * * * *
107511 TTCCTTCGTCCAATTTTCCGAACATTTCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTT
131 CTCATTCGACCAATTTTCCGAACATTCCATGATCGAGAAATCGCATCACTTGGTCTAAATAGTTT
*
107576 GTCATTTTATAAAAATCTTTCGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTC
196 GTCATTTTATAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAGGAATTGTTTCT-TC
* * *** *
107641 TTTT-TTCTTGGACGAACTTTTGAACTTGTAAAACATTTACGAGTTCTTCTATAACTTCAGTTCC
260 TTTTGTTCGTGGACAAACTTCCAAACTAGTAAAACATTTACGAGTTCTTCTATAACTTCAGTTCC
* * * * *
107705 TTTGAATATGCAAGACGAACCATTCCTTCGAGCAACTTTTCGAACCTTTCGTTCTCGAGAAATCA
325 TTTGAATATGAAAGACGAACCATTCATTCGACCAACTTTTCGAACCTTCCATTCTCGAGAAATC-
* * *
107770 G-ATCGTTTGTTCAAAATAGACTTTCATTTTCTTAACAACTTTTGGT-TTATGAATTAAAAACTT
389 GCATCATCTGGTCAAAATAGACTTTCATTTTCTTAACAACTTTTGGTCTT-TGAATTAAAAACTT
* * * *
107833 ATTTACGTGAGAGTTA-TTTCTCTCTT-GATTCTTGGACGAACTTTTGATCTTCTGAAACATTTA
453 ATTTACGTGAGA-ATAGTTTCTCTCTTCG-TTCTTGGACGAACTTCTGAACTTCTCAAACATTTA
107896 CGAGTT-TTTTCATAACATCGGTACTTGAGAGAATTCAACACAATTGTAAAAAACTTCT
516 CGAGTTCTTTTCATAACATCGGTACTTGAGAGAATTCAACACAATTGTAAAAAACTTCT
* * ** **
107954 GTCTTTGAATTACAAACTTATTTACGTGAGGATTGTGTCTCTCTAGGTTTGTGGACAAAC-TTCG
1 GTCTTTGAATTAAAAACTTATTTAAGTGAAAATTGTGTCTCTCTAGGTTCATGGACAAACTTTC-
* * * *
108018 AAACTTGGCAGAGATTTACGAGTTC-TTTTATAACTCCGGTTGC-GTA-AAGTATTCAAGACGAT
65 AAACTTGGCAGACATTTACGAATTCTTTTTATAACTCCAGTTCCTG-AGAA-TATTCAAGACGAT
* ** *
108080 CTACTCATTCGAGCAATTTTTTGAACATTCCATGATCG-GAAAATCGCATCACTTGGTTTAAATA
128 CTACTCATTCGACCAATTTTCCGAACATTCCATGATCGAG-AAATCGCATCACTTGGTCTAAATA
* *
108144 GTTTGTCATTTTATAAAAATCTTTTGGTCTTTAAATTCAAAACTTTTTTACGT-GAGAATTGTTT
192 GTTTGTCATTTTATAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAG-GAATTGTTT
* * * **
108208 CTTTTTTTGTTCGTGGACAAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTTATAACTTTGG
256 CTTCTTTTGTTCGTGGACAAACTTCCAAACTAGTAAAACATTTACGAGTTCTTCTATAACTTCAG
* * * * * *
108273 TTCCTTTGAATATTAAAGATGATCCCTTCATTCGACCAATTTTTCGAATCTTCCATTCTCGAGAA
321 TTCCTTTGAATATGAAAGACGAACCATTCATTCGACCAACTTTTCGAACCTTCCATTCTCGAGAA
** * *
108338 ATCGCATCATCTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTTGTCTTTGAATTAAAAAC
386 ATCGCATCATCTGGTCAAAATAGACTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAAC
*
108403 TTATTTACGTGAGAATAGTTTCTCTCTTCGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTA
451 TTATTTACGTGAGAATAGTTTCTCTCTTCGTTCTTGGACGAACTTCTGAACTTCTCAAACATTTA
*
108468 TGAGTTCTTTT
516 CGAGTTCTTTT
108479 AAAACTTCGG
Statistics
Matches: 447, Mismatches: 67, Indels: 22
0.83 0.12 0.04
Matches are distributed among these distances:
571 13 0.03
572 357 0.80
573 77 0.17
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (574 bp):
GTCTTTGAATTAAAAACTTATTTAAGTGAAAATTGTGTCTCTCTAGGTTCATGGACAAACTTTCA
AACTTGGCAGACATTTACGAATTCTTTTTATAACTCCAGTTCCTGAGAATATTCAAGACGATCTA
CTCATTCGACCAATTTTCCGAACATTCCATGATCGAGAAATCGCATCACTTGGTCTAAATAGTTT
GTCATTTTATAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAGGAATTGTTTCTTCT
TTTGTTCGTGGACAAACTTCCAAACTAGTAAAACATTTACGAGTTCTTCTATAACTTCAGTTCCT
TTGAATATGAAAGACGAACCATTCATTCGACCAACTTTTCGAACCTTCCATTCTCGAGAAATCGC
ATCATCTGGTCAAAATAGACTTTCATTTTCTTAACAACTTTTGGTCTTTGAATTAAAAACTTATT
TACGTGAGAATAGTTTCTCTCTTCGTTCTTGGACGAACTTCTGAACTTCTCAAACATTTACGAGT
TCTTTTCATAACATCGGTACTTGAGAGAATTCAACACAATTGTAAAAAACTTCT
Found at i:108361 original size:216 final size:215
Alignment explanation
Indices: 107944--109802 Score: 1729
Period size: 215 Copynumber: 8.6 Consensus size: 215
107934 CACAATTGTA
* * * * **
107944 AAAAACTTCT-GTCTTTGAATTACAAACTTATTTACGTGAGGATTGTGTCTCTCTAGGTT-TGTG
1 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-TG
* * * * * *
108007 GACAAACTT-CGAAACTTGGCAGAGATTTACGAGTTCTTTTATAACTCCGGTTGC-GTAAAGTAT
65 GACAAACTTCCG-AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTTGAAGTAT
* * * * * * *
108070 TCAAGACGATCTACTCATTCGAGCAATTTTTTGAACATTCCATGATCG-GAAAATCGCATCACTT
128 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTT
**
108134 GGTTTAAATAGTTTGTCATTTTAT
192 GGTCAAAATAGTTTGTCATTTTAT
* * * * * *
108158 AAAAATCTTTTGGTCTTTAAATTCAAAACTTTTTTACGTGAGAATTGTTTCTTTTTTTGTTCGTG
1 AAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * *
108223 GACAAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTTGAA-TATT
65 GACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTTGAAGTATT
* * * * * *
108287 AAAGATGATCCCTTCATTCGACCAATTTTTCGAATC-TTCCATTCTCGAGAAATCGCATCATCTG
129 CAAGACGATCCATTCCTTCGACCAATTTTTCGAA-CATTCCATGCTCGAGAAATCGCATCATTTG
* *
108351 GTCAAAATAGTTTTTCATTTTGTT
193 GTCAAAATAGTTTGTCATTTT-AT
* * * *
108375 AACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTCGTTCTTGG
1 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * *
108440 ACGAACTTCTGAACTTGTCAAACATTTATGAGTTCTTTTAAAACTTCGG-T-TTAGAGAGTATTC
66 ACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTTGA-AGTATTC
* * ** *
108503 AAGACGATCCATTCTTTCGACCAATTTTTTGAACATTCCATGCTTAAGAAATCGCATCATTTTGT
130 AAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGT
* * * * *
108568 GAAAGTAGTTTCTTATTTTGT
195 CAAAATAGTTTGTCATTTTAT
* * * * * * *
108589 AAACAACTTTTGGACTTTTAGTTAAAAAGTTATTTATGAGAGAATTGTTTCTCTCTTGGTTCTTG
1 AAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * *
108654 GACAAACTTCCGAACTTGTCAAATATTTTAAGAGTTCTTTTATAGCTTCAGG-TC-TTGAGAGTA
65 GACAAACTTCCGAACTTGTCAAACA-TTTACGAGTTCTTTTATAACTTC-GGTTCTTTGA-AGTA
* * * * * * * *
108717 TTCAACACGATTCATTCATTCGAGCAATTTTTCGACCATTTCATGCT-TAGGAAATCACATCATT
127 TTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATT
* *
108781 TGGTCTAGAA-AGTTTGTCATTTTGT
191 TGGTC-AAAATAGTTTGTCATTTTAT
* * *
108806 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTG
1 AAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
** * * * * * *
108871 GATGAACTTTCGATCTCGTTAAACATTTACGAGTTCTTTTATAACTCCAGTTC-TTGAAGTATTC
65 GACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTTGAAGTATTC
* * * *
108935 AACACAATCCATTCCTTCGACCAATTTTTCGAACATTTCACGCTCTGA-AAATCGCATCATTTGG
130 AAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGG
* * * ** *
108999 TCTAAATACTTCGTTGTTTTAC
194 TCAAAATAGTTTGTCATTTTAT
* * * * * *
109021 AAAAATCTTTTGGTGTTTAAATTAAAAACTTTTTTACGTGGGAATTGTATCTCTCTTTCTTCTTG
1 AAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
*
109086 GACAAACTTCCCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACGTCGGTTCCTTTGAA-TA
65 GACAAACTT--CCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTTGAAGTA
* * * * * * * *
109150 TTCAAGACGACCCATTCCTTCGA-AAAGTTTTTTGAACCTTCCATTCACGGGAAATCACATCATT
127 TTCAAGACGATCCATTCCTTCGACCAA-TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATT
* *
109214 TGGTCAAAATAGTTTTTCATTTTGTT
191 TGGTCAAAATAGTTTGTCATTTT-AT
* * *
109240 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTCATGG
1 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * ** *
109305 ACGAACTTTCC-AATTTGTCAGACATTTACGAATTCTTTTTATAACTTCAATTC-TTGAGAATAT
66 ACAAAC-TTCCGAACTTGTCAAACATTTACGAGTTC-TTTTATAACTTCGGTTCTTTGA-AGTAT
* * * * *
109368 TCAAGACGATCTATTCCTTCGTCCAGTTTTCCGAACATTCCATGCTCGAGAAATTGCATCATTTG
128 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG
**
109433 GTCTCAATAGTTTGTCATTTTAT
193 GTCAAAATAGTTTGTCATTTTAT
* * * *
109456 AAAAATCTTTCGGTCTTTGAATTAAAAACTTTTTTACGT-AGGAAATGTTTCTCTCTTTTTTCTT
1 AAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTTGTTCTT
** * * * *
109520 GGATGAACTTTCGAACTGGTAAAACATTTACGAGTTCTTCTATAACTTCGGTTCCTTTGAA-TAT
64 GGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTTGAAGTAT
* * * * * * * * *
109584 GCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACCTTTCGTTCTCGGGAAATCACATCAATTG
128 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG
*
109648 GTCAAAATAGATTT-TCATTTTCTT
193 GTCAAAATAG-TTTGTCATTTT-AT
* * * **
109672 AACAACTTTTGGT-TTATGAGTTAAAAACTTATTTACGTGAGAGTTACTTCTCTC-TTGATTCTT
1 AAAAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TTCTT
* ** * * * * *
109735 GGACGAACTTTTGATCTTCTGAAACATTTACGAATT-TTTTCATAACTTCGGTAC-TTGAGAGTA
64 GGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTT-ATAACTTCGGTTCTTTGA-AGTA
109798 TTCAA
127 TTCAA
109803 CACAATTGTA
Statistics
Matches: 1337, Mismatches: 261, Indels: 93
0.79 0.15 0.05
Matches are distributed among these distances:
213 8 0.01
214 23 0.02
215 416 0.31
216 378 0.28
217 370 0.28
218 131 0.10
219 11 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
ACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTTGAAGTATTCA
AGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTC
AAAATAGTTTGTCATTTTAT
Found at i:108803 original size:432 final size:430
Alignment explanation
Indices: 107954--109802 Score: 2017
Period size: 432 Copynumber: 4.3 Consensus size: 430
107944 AAAAACTTCT
* * * * * * *
107954 GTCTTTGAATTACAAACTTATTTACGTGAGGATTGTGTCTCTCTAGGTT-TGTGGACAAACTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCT-TGGACGAACTTTG
* * * * ** * *
108018 AAACTTGGCAGAGATTTACGAGTTCTTTTATAACTCCGGTTGCGTAAAGTATTCAAGACGATCTA
65 -AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTTTG-AGAGTATTCAAGACGATCCA
* * * * * * * *
108083 CTCATTCGAGCAATTTTTTGAACATTCCATGATCG-GAAAATCGCATCACTTGGTTTAAATAGTT
128 TTCCTTCGACCAATTTTTCGAACATTCCATGCTTGAG-AAATCGCATCATTTGGTCTAAATAGTT
* * * *
108147 TGTCATTTTATAAAAATCTTTTGGTCTTTAAATTCAAAACTTTTTTACGTGAGAATTGTTTCTTT
192 TCTCATTTTATAAAAATCTTTTGGTCTTTAAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCT
* * * * *
108212 TTTTGTTCGTGGACAAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCC
257 CTTTGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * * *
108277 TTTGAATATTAAAGATGATCCCTTCATTCGACCAATTTTTCGAATCTTCCATTCTCGAGAAATCG
322 TTTGAATATTCAAGACGATCCATTCATTCGAGCAATTTTTCGAACCTTTCATTCTCGGGAAATCA
* *
108342 CATCATCTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTT
387 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTG
*
108386 GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTCGTTCTTGGACGAACTTCTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTT-TG
* * *
108451 AACTTGTCAAACATTTATGAGTTCTTTTAAAACTTCGGTTTAGAGAGTATTCAAGACGATCCATT
65 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTTTGAGAGTATTCAAGACGATCCATT
* * * * *
108516 CTTTCGACCAATTTTTTGAACATTCCATGCTTAAGAAATCGCATCATTTTGT-GAAAGTAGTTTC
130 CCTTCGACCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAA-TAGTTTC
* * * * * * * *
108580 TTATTTTGTAAACAA-CTTTTGGACTTTTAGTTAAAAAGTTATTTATGAGAGAATTGTTTCTCTC
194 TCATTTTATAAA-AATCTTTTGGTCTTTAAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTC
* * * *
108644 TTGGTTCTTGGACAAACTTCCGAACTTGTCAAATATTTTAAGAGTTCTTTTATAGCTTCAGG-T-
258 TTTGTTCTTGGACAAACTTCCGAACTTGTCAAACA-TTTACGAGTTCTTTTATAACTTC-GGTTC
* * * **
108707 C-TTGAGAGTATTCAACACGATTCATTCATTCGAGCAATTTTTCG-ACCATTTCATGCTTAGGAA
321 CTTTGA-A-TATTCAAGACGATCCATTCATTCGAGCAATTTTTCGAACC-TTTCATTCTCGGGAA
* * *
108770 ATCACATCATTTGGTCTAGAA-AGTTTGTCATTTTGTAAACAACTTTTG
383 ATCACATCATTTGGTC-AAAATAGTTTTTCATTTTGTTAACAACTTTTG
* *
108818 GTCTATGAATTAAAAACTTATTTACGTGAGAATTA-TTTCTCTCTTGGTTCTTGGATGAACTTTC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAA-TAGTTTCTCTCTTGGTTCTTGGACGAACTTT-
* * * * * * *
108882 GATCTCGTTAAACATTTACGAGTTCTTTTATAACTCCAGTTCTTGA-AGTATTCAACACAATCCA
64 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-TTGAGAGTATTCAAGACGATCCA
* * *
108946 TTCCTTCGACCAATTTTTCGAACATTTCACGCTCTGA-AAATCGCATCATTTGGTCTAAATA-CT
128 TTCCTTCGACCAATTTTTCGAACATTCCATGCT-TGAGAAATCGCATCATTTGGTCTAAATAGTT
** * * * * *
109009 TCGTTGTTTTACAAAAATCTTTTGGTGTTTAAATTAAAAACTTTTTTACGTGGGAATTGTATCTC
192 TC-TCATTTTATAAAAATCTTTTGGTCTTTAAATTAAAAACTTTTTTACGAGAGAATTGTTTCTC
* *
109074 TCTTTCTTCTTGGACAAACTTCCCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACGTCGGT
256 TCTTTGTTCTTGGACAAACTT--CCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* * * * * *
109139 TCCTTTGAATATTCAAGACGACCCATTCCTTCGA-AAAGTTTTTTGAACCTTCCATTCACGGGAA
319 TCCTTTGAATATTCAAGACGATCCATTCATTCGAGCAA-TTTTTCGAACCTTTCATTCTCGGGAA
109203 ATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTG
383 ATCACATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTG
* * * * *
109251 GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTT-G
* * * ** * *
109316 AATTTGTCAGACATTTACGAATTCTTTTTATAACTTCAATTCTTGAGAATATTCAAGACGATCTA
65 AACTTGTCAAACATTTACGAGTTC-TTTTATAACTTCGGTT-TTGAGAGTATTCAAGACGATCCA
* * * * * *
109381 TTCCTTCGTCCAGTTTTCCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTCAATAGTTT
128 TTCCTTCGACCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
109446 GTCATTTTATAAAAATCTTTCGGTCTTTGAATTAAAAACTTTTTTACGTAG-GAAATGTTTCTCT
193 CTCATTTTATAAAAATCTTTTGGTCTTTAAATTAAAAACTTTTTTACG-AGAGAATTGTTTCTCT
* ** * * * *
109510 CTTTTTTCTTGGATGAACTTTCGAACTGGTAAAACATTTACGAGTTCTTCTATAACTTCGGTTCC
257 CTTTGTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
109575 TTTGAATATGCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACCTTTCGTTCTCGGGAAATCA
322 TTTGAATATTCAAGACGATCCATTCATTCGAGCAATTTTTCGAACCTTTCATTCTCGGGAAATCA
* * *
109639 CATCAATTGGTCAAAATAGATTTTCATTTTCTTAACAACTTTTG
387 CATCATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTG
* * * *
109683 GT-TTATGAGTTAAAAACTTATTTACGTGAGAGTTA-CTTCTCTCTTGATTCTTGGACGAACTTT
1 GTCTT-TGAATTAAAAACTTATTTACGTGAGA-ATAGTTTCTCTCTTGGTTCTTGGACGAAC-TT
* * * * *
109746 TGATCTTCTGAAACATTTACGAATT-TTTTCATAACTTCGGTACTTGAGAGTATTCAA
63 TGAACTTGTCAAACATTTACGAGTTCTTTT-ATAACTTCGGT-TTTGAGAGTATTCAA
109803 CACAATTGTA
Statistics
Matches: 1186, Mismatches: 193, Indels: 77
0.81 0.13 0.05
Matches are distributed among these distances:
430 11 0.01
431 181 0.15
432 543 0.46
433 268 0.23
434 43 0.04
435 137 0.12
436 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (430 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTGA
ACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTTTGAGAGTATTCAAGACGATCCATTC
CTTCGACCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTCTC
ATTTTATAAAAATCTTTTGGTCTTTAAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTT
GTTCTTGGACAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTTG
AATATTCAAGACGATCCATTCATTCGAGCAATTTTTCGAACCTTTCATTCTCGGGAAATCACATC
ATTTGGTCAAAATAGTTTTTCATTTTGTTAACAACTTTTG
Found at i:110375 original size:573 final size:571
Alignment explanation
Indices: 109251--110375 Score: 1466
Period size: 573 Copynumber: 2.0 Consensus size: 571
109241 ACAACTTTTG
* ** *
109251 GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCC
1 GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTGTCTCTCTAGGTTCATGGACAAACTTTCC
* *
109316 AATTTGTCAGACATTTACGAATTCTTTTTATAACTTCAATTCTTGAGAATATTCAAGACGATCTA
66 AACTTGTCAGAAATTTACGAATTCTTTTTATAACTTCAATTCTTGAGAATATTCAAGACGATCTA
* * * * * *
109381 TTCCTTCGTCCAGTTTTCCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTCAATAGTTT
131 TTCATTCGACCAATTTTCCGAACATTCCATGATCGAGAAATGGCATCATTTGGTCTAAATAGTTT
* *
109446 GTCATTTTATAAAAATCTTTCGGTCTTTGAATTAAAAACTTTTTTACGTAGGAAATGTTTCTCTC
196 GTCATTTTAAAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAGGAAATGTTTCTCTC
* * ** * *
109511 TTTTTTCTTGGATGAACTTTCGAACTGGTAAAACATTTACGAGTTCTTCTATAACTTCGGTTCCT
261 TTTTTTCGTCGACAAACTTCCGAACTAGTAAAACATTTACGAGTTCTTCTATAACTTCGGTTCCT
* * * *
109576 TTGAATATGCAAGACGATCCATTCCTTCGAGCAATTTTTGAACCTTTCGTTCTCGGGAAATCACA
326 TTGAATATGCAAGACGATCCATTCCTCCGACCAATTTTTGAACCTTCCATTCTCGGGAAATCACA
*
109641 TCAATTGGTCAAAATAGATTTTCATTTTCTTAACAACTTTTGGTTTATGAGTTAAAAACTTATTT
391 TCAATTGGTCAAAATAGATTTTCATTTTCTTAACAACTTTTGGTTTATGAATTAAAAACTTATTT
* * * * * *
109706 ACGTGAGAGTTACTTCTCTCTTGATTCTTGGACGAACTTTTGATCTTCTGAAACATTTACGAATT
456 ACATGAGAGATACTTCTCTCTTGATTCTTGGACGAACTGTCGAACTTCTCAAACATTTACGAATT
*
109771 TTTTCATAACTTCGGTACTTGAGAGTATTCAACACAATTGTAAAAAACTTCT
521 TTTTCAAAACTTCGGTA-TTGAGAGTATTCAACACAATTGTAAAAAACTTCT
*
109823 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTAGGTTTC-TGGACAAAC-TTC
1 GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTGTCTCTCTAGG-TTCATGGACAAACTTTC
* **
109886 CAAACTTGTCAGAAATTTACGAGTTC-TTTTATAACTTCGGTTGCTT-A-AAGTATTCAAGACGA
65 C-AACTTGTCAGAAATTTACGAATTCTTTTTATAACTTCAATT-CTTGAGAA-TATTCAAGACGA
* ** * * *
109948 TCTATTCATTCGAGCAATTTTTTGAACATTCTATGATCGAGAAAATGGCATCATTTTGTTTAAAT
127 TCTATTCATTCGACCAATTTTCCGAACATTCCATGATCGAG-AAATGGCATCATTTGGTCTAAAT
* * * *
110013 AGTTTTGTCATTTTAAAAAAATCTTTTGGTCTTTAAATTTAAAACTTTTTTACGTGGGAATTGTT
191 AG-TTTGTCATTTTAAAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAGGAAATGTT
* * * *
110078 TCTCT-TTTTGTTCGTCGACAAACTTCCGAACTAGTCAAACATTTATGAGTTCTTTTATAACTTT
255 TCTCTCTTTT-TTCGTCGACAAACTTCCGAACTAGTAAAACATTTACGAGTTCTTCTATAACTTC
* * * * *
110142 GGTTCCTTTGAATATTCGAGATGATCCCTTCCTCCGACCAATTTTTTGAATCTTCCATTCTCGGG
319 GGTTCCTTTGAATATGCAAGACGATCCATTCCTCCGACCAA-TTTTTGAACCTTCCATTCTCGGG
* * * *
110207 AAATCGCATC-ATCTGGTCAAAATAGTTTTTCATTTTTTTAACAACTTTTTGTCTT-TGAATTAA
383 AAATCACATCAAT-TGGTCAAAATAGATTTTCATTTTCTTAACAACTTTTGGT-TTATGAATTAA
* *
110270 AAACTTATTTACATGAGA-ATAGTTTCTCTCTTCG-TTCTTGGACGAACTGTCGAACTTGTCAAA
446 AAACTTATTTACATGAGAGATA-CTTCTCTCTT-GATTCTTGGACGAACTGTCGAACTTCTCAAA
110333 CATTTAC-AAGTTCTTTT-AAAACTTCGGT-TTAGAGAGTATTCAA
509 CATTTACGAA-TT-TTTTCAAAACTTCGGTATT-GAGAGTATTCAA
110376 GACGATCCAT
Statistics
Matches: 477, Mismatches: 61, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
570 2 0.00
571 64 0.13
572 102 0.21
573 161 0.34
574 141 0.30
575 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (571 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTGTCTCTCTAGGTTCATGGACAAACTTTCC
AACTTGTCAGAAATTTACGAATTCTTTTTATAACTTCAATTCTTGAGAATATTCAAGACGATCTA
TTCATTCGACCAATTTTCCGAACATTCCATGATCGAGAAATGGCATCATTTGGTCTAAATAGTTT
GTCATTTTAAAAAAATCTTTCGGTCTTTAAATTAAAAACTTTTTTACGTAGGAAATGTTTCTCTC
TTTTTTCGTCGACAAACTTCCGAACTAGTAAAACATTTACGAGTTCTTCTATAACTTCGGTTCCT
TTGAATATGCAAGACGATCCATTCCTCCGACCAATTTTTGAACCTTCCATTCTCGGGAAATCACA
TCAATTGGTCAAAATAGATTTTCATTTTCTTAACAACTTTTGGTTTATGAATTAAAAACTTATTT
ACATGAGAGATACTTCTCTCTTGATTCTTGGACGAACTGTCGAACTTCTCAAACATTTACGAATT
TTTTCAAAACTTCGGTATTGAGAGTATTCAACACAATTGTAAAAAACTTCT
Found at i:110683 original size:217 final size:215
Alignment explanation
Indices: 109808--110835 Score: 1026
Period size: 217 Copynumber: 4.7 Consensus size: 215
109798 TTCAACACAA
* * * *
109808 TTGTAAAAAACTTCT-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTAGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * *
109872 -TCTGGACAAACTTCCAAACTTGTCAGAA-ATTTACGAGTTCTTTTATAACTTCGGTTGCTT-AA
66 CT-TGGACGAACTT-CGAACTTGTCA-AACATTTAAGAGTTCTTTTATAACTTCGG-T-CTTGAG
* * * * * *
109934 AGTATTCAAGACGATCTATTCATTCGAGCAATTTTTTGAACA-TTCTATGATCGAGAAAATGGCA
126 AGTATTCAAGACGATCCATTCATTCGACCAATTTTTTGAACATTTC-ATGCT-TAGGAAATCGCA
* *
109998 TCATTTTGT-TTAAATAGTTTTGTCATT
189 TCATTTGGTCTAAAATAG-TTTGTCATT
* * * * * * * *
110025 TT-AAAAAAATCTTTTGGTCTTTAAATTTAAAACTTTTTTACGTGGGAATTGTTTCTCTTTTTGT
1 TTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * * *
110089 TCGTCGACAAACTTCCGAACTAGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTCCTTTGA-
65 TCTTGGACGAACTT-CGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGG-T-C-TTGAG
* * * * * * * **
110153 A-TATTCGAGATGATCCCTTCCTCCGACCAATTTTTTGAATC-TTCCATTCTCGGGAAATCGCAT
126 AGTATTCAAGACGATCCATTCATTCGACCAATTTTTTGAA-CATTTCATGCTTAGGAAATCGCAT
* *
110216 CATCTGGTC-AAAATAGTTTTTCATT
190 CATTTGGTCTAAAATAGTTTGTCATT
* * * * * *
110241 TTTTTAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATAGTTTCTCTCTTCGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
*
110306 CTTGGACGAACTGTCGAACTTGTCAAACATTTACA-AGTTCTTTTAAAACTTCGGT-TTAGAGAG
66 CTTGGACGAACT-TCGAACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTCTT-GAGAG
* * *
110369 TATTCAAGACGATCCATTCTTTCGACCAATTTTTTGAACATTCCATGCTTAAGAAATCGCATCAT
128 TATTCAAGACGATCCATTCATTCGACCAATTTTTTGAACATTTCATGCTTAGGAAATCGCATCAT
* *
110434 TT--TTTGAAAATAGTTTGTTATT
193 TTGGTCT-AAAATAGTTTGTCATT
* * * * *
110456 TTGTAAACAACTTTTGGACTTTTAGTTAAAAACTTATTTATGAGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
*
110521 CTTGGACGAACTTCAGAACTTGTCAAATATTTTAAGAGTTCTTTTATAACTTCAGGTCTTGAGAG
66 CTTGGACGAACTTC-GAACTTGTCAAACA-TTTAAGAGTTCTTTTATAACTTC-GGTCTTGAGAG
* * * *
110586 TATTCAAGACGATTCATTCATTCGAGCAATTTTTCGACCATTTCATGCTTAGGAAATCGCATCAT
128 TATTCAAGACGATCCATTCATTCGACCAATTTTTTGAACATTTCATGCTTAGGAAATCGCATCAT
*
110651 TTGGTCTAAAA-AATTTGTCATT
193 TTGGTCTAAAATAGTTTGTCATT
* * * *
110673 TTGTAAACAACTTTTTGTCTATGAGTTTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGT
1 TTGTAAACAACTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * * *
110738 TCTTGGATGAACTGTCGATCTCGTTAAACATTTACGAGTTCTTTTATAACTTCAGTTCTTGAGAG
65 TCTTGGACGAACT-TCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTC-GGTCTTGAGAG
* * * *
110803 TATTCAACACAATCCATTCCTTCAACCAATTTT
128 TATTCAAGACGATCCATTCATTCGACCAATTTT
Statistics
Matches: 673, Mismatches: 111, Indels: 54
0.80 0.13 0.06
Matches are distributed among these distances:
212 2 0.00
213 3 0.00
214 4 0.01
215 150 0.22
216 126 0.19
217 191 0.28
218 186 0.28
219 10 0.01
220 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTCTTGAGAGTAT
TCAAGACGATCCATTCATTCGACCAATTTTTTGAACATTTCATGCTTAGGAAATCGCATCATTTG
GTCTAAAATAGTTTGTCATT
Done.