Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010967.1 Kokia drynarioides strain JFW-HI SEQ_125935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2208
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29


Found at i:1080 original size:216 final size:215

Alignment explanation


    Indices: 687--2204  Score: 1886
    Period size: 216  Copynumber: 7.0  Consensus size: 215

        677 ATGTGTCGTG

                                                    *                        
        687 TTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGA-CAAATGATGCGATTTCCCGAT
          1 TTCAAAGACCAAAAGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

                    *    *     *                 *      *    * *         *   
        751 CATGGAATATTCGGAAAATAGGTCAAAGGAATGGATCATCTTGAATACTCTTAGGAACCGATGTT
         65 CATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT

                       *                     *                *  *           
        816 ATAAAAGAATTCGTAAA-GTTTTAACAAGTTCGAAAGTTCGTCCAAGAACTAATAGAGAAACAAT
        130 ATAAAAGAATTAGTAAATG-TTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT

                *                 
        880 TCTCTCGTAAAAAAGTTTTTAA
        194 TCTCACGTAAAAAAGTTTTTAA

                *                         *                          *       
        902 TTCATAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATATCCCGAT
          1 TTCAAAGACCAAAAGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

                                    *   *                              *     
        967 CATGGAATGTTCGAAAAATTGGTCGAAGAAATGGATCGTCTTGACTACTATCAGGAACCAAAGTT
         65 CATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT

                                               *   * *                  *    
       1032 ATAAAAGAATTAGTAAATGTTTAACAAGTTCGGAACTTCATTCAAGAACCAAGAGAGAAAGAATT
        130 ATAAAAGAATTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT

                           *     
       1097 CTCACGTAAAAAAG-ATTTAA
        195 CTCACGTAAAAAAGTTTTTAA

                                                     **         *        *   
       1117 TTCAAAGACCAAAAGCTTTTTACAAAATGACAAACTATTTATTCCAAATGATACGATTTCCTGAT
          1 TTCAAAGACCAAAAG-TTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

                     *                                  *    *   *   *       
       1182 CATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAATCGAAGTT
         65 CATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT

                                      *     *  *                        **   
       1247 ATAAAAGAACTT-GTAAATGTTT-ACCAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAATTAAT
        130 ATAAAAGAA-TTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT

                *                *
       1310 TCTCTCGTAAAAAAGTTTTTAT
        194 TCTCACGTAAAAAAGTTTTTAA

                    *                                            *           
       1332 TTCAAAGATCAAAAGTTCTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAT
          1 TTCAAAGACCAAAAGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

                       *            * *     *    *                           
       1397 CATGGAATGTTTGAAAAATTGGTCGAGGGAATTGATCATCTTGACTACTATCAGGAACCGAAGTT
         65 CATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT

                     *            *        **    *             *        *    
       1462 ATAAAAGAACTAGTAAATGTTTGACAAGTTCAAAAGTACGTCCAAGAACCATGAGAGAAAGAATT
        130 ATAAAAGAATTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT

              *                  
       1527 CTAACGTAAAAAAGTTTTTAA
        195 CTCACGTAAAAAAGTTTTTAA

                  *          *                *     *   *                 *  
       1548 TTCAAATACCAAAAGCTATTTACAAAATGACAAATTATTTTGACGAAATGATGCGATTTCCCAAT
          1 TTCAAAGACCAAAAG-TTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

            *                                             *    *          *  
       1613 AATGGAATCG-TC-AGAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGTAG
         65 CATGGAAT-GTTCGA-AAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAG

                                       *  *    *            *    * **    *   
       1676 TTATAAAAGAACTT-GTAAATGTTTAAGAACTTCGAAAGTTCGTCCAATAACCTATTGAGATACA
        128 TTATAAAAGAA-TTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA

                                 *   
       1740 ATTCTCTA-GTAAAAAAGTTTCTAA
        192 ATTCTC-ACGTAAAAAAGTTTTTAA

                *                                          * *    *  *    *  
       1764 TTCATAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAATTTATGCAATATCCCAAT
          1 TTCAAAGACCAAAAGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAT

                                    *   *                                    
       1829 CATGGAATGTTCGAAAAATTGGTCGAAGAAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT
         65 CATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTT

                    *             *            *   *                         
       1894 ATAAAAGATTTAGTAAATGTTTGACAAGTTCGGAACTTCTTCCAAGAACCAAGAGAGAAACAATT
        130 ATAAAAGAATTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT

                          *      
       1959 CTCACGTAAAAAAGATTTTAA
        195 CTCACGTAAAAAAGTTTTTAA

                    *                                    *                   
       1980 TTCAAAGAACAAAAGCTTTTTACAAAATGACAAACGT-TTTAGACTAAATGATGCGATTTCCCGA
          1 TTCAAAGACCAAAAG-TTTTTACAAAATGACAAAC-TATTTAGACCAAATGATGCGATTTCCCGA

            *            *                        *   *          *           
       2044 GCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGATCATCTCGACTACTATCTGGAACCGAAGT
         64 TCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGT

                      *   *        *       *  * *   *        * *             
       2109 TATAAAAGAACTAGGAAATGTTTGACAAGTTTGGCACTTCATCCAAGAATCGAGAGAGAAACAAT
        129 TATAAAAGAATTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT

                      *           
       2174 TCTCACGTAATAAAGTTTTTAA
        194 TCTCACGTAAAAAAGTTTTTAA

             *       
       2196 TCCAAAGAC
          1 TTCAAAGAC

       2205 TAAA


Statistics
Matches: 1115,  Mismatches: 168, Indels: 39
        0.84            0.13        0.03

Matches are distributed among these distances:
 214   50  0.04
 215  315  0.28
 216  741  0.66
 217    9  0.01

ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28


Consensus pattern (215 bp):   
TTCAAAGACCAAAAGTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATC
ATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGAAGTTA
TAAAAGAATTAGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
TCACGTAAAAAAGTTTTTAA

Done.