Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010969.1 Kokia drynarioides strain JFW-HI SEQ_125938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8764
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:2278 original size:15 final size:16

Alignment explanation


    Indices: 2248--2293  Score: 53
    Period size: 15  Copynumber: 3.0  Consensus size: 16

       2238 ACTTGATACA

                             
       2248 ATTTAGTCTTTT-TTTT
          1 ATTTA-TCTTTTATTTT

                            
       2264 -TTTATCTTTTATTTT
          1 ATTTATCTTTTATTTT

                  *         
       2279 ATTT-TATTTTATTTT
          1 ATTTATCTTTTATTTT

       2294 CATATTTTGT


Statistics
Matches: 27,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  14    6  0.22
  15   18  0.67
  16    3  0.11

ACGTcount: A:0.15, C:0.04, G:0.02, T:0.78


Consensus pattern (16 bp):   
ATTTATCTTTTATTTT
Done.