Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001097.1 Kokia drynarioides strain JFW-HI SEQ_112369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2459
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33


Found at i:326 original size:25 final size:25

Alignment explanation


    Indices: 297--370  Score: 103
    Period size: 25  Copynumber: 3.0  Consensus size: 25

        287 TTCTAGAAAT

                   * *               
        297 TTAGCTCATGCGAGCCCAGATAGAA
          1 TTAGCTCTTACGAGCCCAGATAGAA

                              *     *
        322 TTAGCTCTTACGAGCCCAAATAGAG
          1 TTAGCTCTTACGAGCCCAGATAGAA

                       *            
        347 TTAGCTCTTACAAGCCCAGATAGA
          1 TTAGCTCTTACGAGCCCAGATAGA

        371 GTTAACCAGT


Statistics
Matches: 43,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   43  1.00

ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23


Consensus pattern (25 bp):   
TTAGCTCTTACGAGCCCAGATAGAA

Found at i:371 original size:25 final size:25

Alignment explanation


    Indices: 309--374  Score: 105
    Period size: 25  Copynumber: 2.6  Consensus size: 25

        299 AGCTCATGCG

                        *           *
        309 AGCCCAGATAGAATTAGCTCTTACG
          1 AGCCCAGATAGAGTTAGCTCTTACA

                  *                  
        334 AGCCCAAATAGAGTTAGCTCTTACA
          1 AGCCCAGATAGAGTTAGCTCTTACA

                            
        359 AGCCCAGATAGAGTTA
          1 AGCCCAGATAGAGTTA

        375 ACCAGTATAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  25   37  1.00

ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23


Consensus pattern (25 bp):   
AGCCCAGATAGAGTTAGCTCTTACA
Done.