genome.fa.s10970.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010970.1 Kokia drynarioides strain JFW-HI SEQ_125939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184175

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142--185	20	2.3	20	84	7	56	38	0	0	61	0.96
156--203	20	2.4	21	86	6	64	31	0	2	66	1.03
168--224	29	2.0	29	82	6	71	36	0	1	61	1.07
625--672	16	2.8	17	84	9	62	33	2	0	64	1.05
627--686	27	2.3	27	85	5	79	30	1	0	68	0.99
2297--2348	22	2.4	22	100	0	104	48	5	11	34	1.63
6602--6626	4	6.2	4	100	0	50	24	0	0	76	0.80
13221--13264	14	3.0	14	77	9	52	43	0	6	50	1.29
15464--15535	35	2.0	35	83	8	90	23	9	16	50	1.75
15651--15770	58	2.1	58	92	3	197	47	20	0	31	1.51
18557--18615	27	2.1	29	81	9	68	35	1	1	61	1.16
18696--18751	26	2.2	24	87	6	76	67	5	1	25	1.21
18849--18976	42	3.0	42	88	0	193	40	15	10	32	1.82
19270--19329	18	3.2	18	70	21	59	33	8	1	56	1.39
21353--21471	39	3.1	39	97	0	220	61	5	4	29	1.36
22739--22820	28	2.9	28	98	0	155	24	9	18	47	1.78
29057--29128	31	2.3	31	85	4	92	34	6	16	41	1.75
34589--34640	21	2.5	20	81	6	59	51	3	7	36	1.49
34589--34635	20	2.3	21	85	3	60	57	4	4	34	1.38
34630--34686	20	2.8	19	75	17	53	45	5	7	42	1.53
34610--34686	40	1.9	40	84	5	102	49	3	5	41	1.43
34828--34866	19	2.0	21	85	10	55	58	12	5	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35186--35283	28	3.3	28	75	15	74	33	3	3	60	1.28
43652--43748	48	2.0	48	95	0	176	41	6	18	34	1.76
43762--43841	42	1.9	42	100	0	160	48	3	18	28	1.65
43775--43842	22	3.2	22	61	23	54	50	2	16	30	1.60
43925--43960	16	2.3	16	90	4	56	47	0	8	44	1.33
47990--48031	19	2.3	18	87	4	57	50	0	0	50	1.00
48059--48095	16	2.3	16	86	13	58	40	0	0	59	0.97
55304--55369	31	2.1	31	83	10	82	54	3	1	40	1.25
56036--56075	20	2.2	18	86	13	55	52	2	15	30	1.55
56108--56221	20	5.9	20	64	15	51	34	7	19	39	1.79
56239--56276	20	1.9	20	88	0	58	47	2	5	44	1.39
63265--63298	3	11.7	3	93	6	61	32	0	0	67	0.91
70036--70065	4	7.2	4	92	7	51	26	0	0	73	0.84
70036--70080	12	3.5	13	82	8	56	28	0	0	71	0.87
70038--70079	14	3.1	14	86	6	52	26	0	0	73	0.83
75996--76415	209	2.0	210	94	1	736	33	12	10	43	1.77
76981--77012	16	2.0	16	100	0	64	18	18	6	56	1.62
81574--81828	133	1.9	131	88	3	377	26	20	25	28	1.99
85809--85878	34	2.1	34	100	0	140	47	11	14	27	1.78
110099--110204	53	2.0	53	81	7	126	49	16	4	29	1.66
113312--113402	37	2.5	36	67	22	89	37	10	10	40	1.76
114335--114371	17	2.3	17	86	9	51	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114366--114401	17	2.1	17	94	0	63	41	2	5	50	1.40
117180--117255	23	3.4	22	79	12	84	11	23	22	42	1.87
120178--120279	23	4.4	23	77	0	105	43	23	19	13	1.87
120177--120279	46	2.2	46	80	0	125	42	23	20	13	1.87
122220--122272	24	2.2	24	82	0	61	33	24	20	20	1.97
125962--126044	37	2.2	37	82	14	100	57	2	3	36	1.29
127880--127946	23	2.9	23	73	8	73	13	8	14	62	1.53
127873--127993	47	2.6	47	79	10	131	11	7	14	66	1.42
127932--127993	23	2.7	23	80	12	81	11	4	12	70	1.30
127873--127994	46	2.6	47	76	13	126	11	7	14	66	1.44
132888--132918	15	2.0	16	93	6	55	64	0	0	35	0.94
132932--132980	24	2.0	24	100	0	98	55	4	12	28	1.55
132939--132993	24	2.3	24	84	9	69	61	5	7	25	1.44
133100--133176	21	3.5	21	73	5	64	64	18	7	9	1.45
133177--133245	19	3.5	19	81	16	86	65	23	7	4	1.36
133175--133234	23	2.8	22	85	12	81	66	21	6	5	1.34
133527--133555	14	2.1	14	100	0	58	27	6	20	44	1.77
135091--135116	12	2.2	12	100	0	52	7	7	7	76	1.15
143030--143073	18	2.5	19	85	14	67	56	2	0	40	1.11
143353--143493	63	2.2	60	73	19	142	49	9	14	26	1.74
144135--144194	27	2.4	25	83	8	77	25	0	6	68	1.14
146387--146414	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161168--161237	31	2.2	31	82	12	88	40	2	2	54	1.30
161551--161591	20	2.0	21	86	9	59	29	4	0	65	1.13
162158--162203	23	2.0	23	87	8	67	45	8	13	32	1.73
165432--165468	18	2.1	17	90	5	56	27	5	16	51	1.66
165829--165870	19	2.2	19	100	0	84	45	4	4	45	1.45
169470--169782	29	10.7	29	79	9	280	34	2	25	37	1.70
169454--169782	58	5.6	59	86	5	436	33	3	25	37	1.72

Tables:   1

The End!