Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010972.1 Kokia drynarioides strain JFW-HI SEQ_125941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7970
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:5813 original size:71 final size:71

Alignment explanation


    Indices: 5699--5916  Score: 310
    Period size: 71  Copynumber: 3.1  Consensus size: 71

       5689 TTGGCTATTG

                           *              *   * *            *               
       5699 ACTTGAGTTGTTTTGAAACAACTCAAGGAACTATTGGTAGAAGTTCAGGTGAAAGGTTACCTTGG
          1 ACTTGAGTTGTTTTGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAGGTTACCTTGG

                 *
       5764 ATACTG
         66 ATACTA

                         *                                                   
       5770 ACTTGAGTTGTTTCGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAGGTTACCTTGG
          1 ACTTGAGTTGTTTTGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAGGTTACCTTGG

            *     
       5835 CTACTA
         66 ATACTA

                                       *  *    *   *         *               
       5841 ACTTGAGTTGTTTTGGAACAACTCAAGTAAGTATCAATAAAAGTTCAGGGGAAAGGTTACCTTGG
          1 ACTTGAGTTGTTTTGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAGGTTACCTTGG

            *     
       5906 TTACTA
         66 ATACTA

                 
       5912 ACTTG
          1 ACTTG

       5917 TTTTGGTAGT


Statistics
Matches: 132,  Mismatches: 15, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  71  132  1.00

ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30


Consensus pattern (71 bp):   
ACTTGAGTTGTTTTGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAGGTTACCTTGG
ATACTA

Found at i:7516 original size:45 final size:45

Alignment explanation


    Indices: 7467--7558  Score: 184
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       7457 GAGGATTGGG

                                                         
       7467 TTATTGATTTATATTTATTATAAATTGAATTGATTGTGACTATCT
          1 TTATTGATTTATATTTATTATAAATTGAATTGATTGTGACTATCT

                                                         
       7512 TTATTGATTTATATTTATTATAAATTGAATTGATTGTGACTATCT
          1 TTATTGATTTATATTTATTATAAATTGAATTGATTGTGACTATCT

              
       7557 TT
          1 TT

       7559 GTGATATTCT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   47  1.00

ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54


Consensus pattern (45 bp):   
TTATTGATTTATATTTATTATAAATTGAATTGATTGTGACTATCT
Done.