Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010975.1 Kokia drynarioides strain JFW-HI SEQ_125944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2484
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35


Found at i:1279 original size:21 final size:20

Alignment explanation


    Indices: 1255--1301  Score: 51
    Period size: 20  Copynumber: 2.3  Consensus size: 20

       1245 AAGTGTTGAT

                      *           
       1255 ACATGGCTTTTAGGTATC-GAA
          1 ACATGGC-TTAAGGTATCAG-A

                *               
       1276 ACATAGCTTAAGGTATCAGA
          1 ACATGGCTTAAGGTATCAGA

                  
       1296 ACATGG
          1 ACATGG

       1302 GGATTATGTA


Statistics
Matches: 22,  Mismatches: 3, Indels: 3
        0.79            0.11        0.11

Matches are distributed among these distances:
  20   15  0.68
  21    7  0.32

ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28


Consensus pattern (20 bp):   
ACATGGCTTAAGGTATCAGA
Done.