Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010977.1 Kokia drynarioides strain JFW-HI SEQ_125946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1825
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:1663 original size:17 final size:17

Alignment explanation


    Indices: 1636--1670  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1626 AATCAAGATT

                              
       1636 ATTTTTATTTATTCATGC
          1 ATTTTTATTTATT-ATGC

                             
       1654 ATTTTT-TTTATTATGC
          1 ATTTTTATTTATTATGC

             
       1670 A
          1 A

       1671 CATATAAAGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    5  0.29
  17    6  0.35
  18    6  0.35

ACGTcount: A:0.23, C:0.09, G:0.06, T:0.63


Consensus pattern (17 bp):   
ATTTTTATTTATTATGC
Done.