Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010979.1 Kokia drynarioides strain JFW-HI SEQ_125949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38


Found at i:392 original size:24 final size:24

Alignment explanation


    Indices: 359--418  Score: 111
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        349 CTTTCAGTTA

                 *                  
        359 GTTTAATTGTTTCAATTAAACTCC
          1 GTTTATTTGTTTCAATTAAACTCC

                                    
        383 GTTTATTTGTTTCAATTAAACTCC
          1 GTTTATTTGTTTCAATTAAACTCC

                        
        407 GTTTATTTGTTT
          1 GTTTATTTGTTT

        419 GAGTCAAACT


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   35  1.00

ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53


Consensus pattern (24 bp):   
GTTTATTTGTTTCAATTAAACTCC

Found at i:427 original size:24 final size:24

Alignment explanation


    Indices: 359--429  Score: 97
    Period size: 24  Copynumber: 3.0  Consensus size: 24

        349 CTTTCAGTTA

                 *          *       
        359 GTTTAATTGTTTCAATTAAACTCC
          1 GTTTATTTGTTTCAATCAAACTCC

                            *       
        383 GTTTATTTGTTTCAATTAAACTCC
          1 GTTTATTTGTTTCAATCAAACTCC

                        * *        
        407 GTTTATTTGTTTGAGTCAAACTC
          1 GTTTATTTGTTTCAATCAAACTC

        430 TTATTAGTGT


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   43  1.00

ACGTcount: A:0.25, C:0.15, G:0.11, T:0.48


Consensus pattern (24 bp):   
GTTTATTTGTTTCAATCAAACTCC
Done.