genome.fa.s10981.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010981.1 Kokia drynarioides strain JFW-HI SEQ_125951, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  467599

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626--1694	29	2.2	33	82	12	92	42	0	4	53	1.20
9160--9190	16	1.9	16	93	0	53	48	9	3	38	1.52
9237--9292	27	2.1	27	83	12	71	50	5	1	42	1.35
10209--10273	16	3.9	16	71	15	51	47	0	4	47	1.22
14066--14109	21	2.1	21	83	8	54	47	6	11	34	1.66
14578--14605	3	9.3	3	100	0	56	0	35	0	64	0.94
19817--19869	23	2.2	24	87	9	74	41	11	9	37	1.73
20374--20412	20	1.9	21	89	5	62	74	0	15	10	1.07
20376--20422	20	2.4	19	76	13	51	70	0	19	10	1.16
40841--40901	30	2.1	30	90	3	97	54	13	4	27	1.59
46500--46577	31	2.5	31	100	0	156	38	19	8	33	1.83
58570--58614	23	2.0	22	82	4	54	31	11	8	48	1.69
68841--68876	7	5.1	7	90	10	56	86	0	0	13	0.58
68841--68876	13	2.6	13	91	8	54	86	0	0	13	0.58
72944--72987	22	2.0	22	95	0	79	34	22	15	27	1.95
89205--89244	19	2.0	21	85	9	57	47	17	0	35	1.48
91214--91278	31	2.1	31	97	0	121	40	6	18	35	1.76
98043--98071	2	14.5	2	100	0	58	48	0	0	51	1.00
100833--100861	2	14.5	2	100	0	58	0	48	0	51	1.00
108938--108984	24	2.0	24	87	8	69	40	0	12	46	1.42
109028--109090	24	2.5	24	85	10	74	34	1	1	61	1.15
109035--109079	20	2.3	19	80	3	54	28	2	2	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111395--111445	22	2.3	23	83	12	63	56	0	0	43	0.99
111902--111991	31	2.9	30	77	8	101	47	5	5	41	1.50
118962--119033	27	3.1	21	78	15	56	54	0	1	44	1.08
118981--119038	27	2.2	26	87	9	82	53	1	0	44	1.10
118965--119033	25	2.8	24	75	18	70	55	0	1	43	1.08
122292--122381	47	1.9	47	81	4	110	16	18	25	38	1.92
123177--123211	16	2.2	16	94	0	61	34	0	37	28	1.58
128205--128259	24	2.3	24	81	6	67	61	5	14	18	1.51
133636--133725	47	1.9	47	88	4	137	31	10	23	35	1.88
140224--140257	5	7.0	5	86	6	52	35	0	0	64	0.94
140224--140265	14	2.9	14	85	3	57	38	0	0	61	0.96
141838--141903	34	2.0	32	82	11	80	51	0	1	46	1.10
142123--142182	31	1.9	31	83	6	77	36	5	5	53	1.45
142646--142879	115	2.0	115	98	0	450	38	4	13	43	1.65
147808--147854	15	3.4	14	80	17	53	31	4	46	17	1.67
147787--147859	6	12.7	6	78	8	53	36	2	42	17	1.64
148637--148686	22	2.2	22	82	10	57	40	6	0	54	1.25
154013--154075	31	2.0	32	84	3	83	41	12	3	42	1.59
154059--154099	21	2.0	21	90	9	66	43	21	0	34	1.53
154064--154107	21	2.1	21	83	8	54	45	22	0	31	1.53
154101--154133	12	2.8	12	95	0	57	87	3	0	9	0.63
162090--162189	23	4.3	23	77	7	103	14	23	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163224--163267	23	1.9	23	86	9	63	22	9	2	65	1.32
164026--164068	22	2.0	22	86	9	61	58	18	9	13	1.62
164029--164082	20	2.6	22	82	8	69	57	18	9	14	1.64
173324--173362	16	2.4	17	86	4	53	48	15	2	33	1.58
178901--178931	16	1.9	16	93	0	53	48	22	0	29	1.51
183111--183237	60	2.1	59	82	4	148	37	16	10	36	1.83
197821--197923	48	2.1	48	96	0	188	28	20	10	40	1.85
233272--233314	2	21.5	2	95	0	77	0	46	0	53	1.00
233314--233349	2	18.5	2	94	5	65	47	0	0	52	1.00
238134--238205	15	4.7	15	73	14	67	50	1	1	47	1.18
238152--238198	24	2.0	24	83	8	60	53	0	2	44	1.12
240820--240879	31	1.9	31	83	6	77	33	16	15	35	1.90
245304--245364	23	2.7	23	82	7	63	40	0	3	55	1.16
256241--256822	176	3.3	177	83	5	727	28	9	19	42	1.82
262330--262355	2	13.0	2	100	0	52	50	0	0	50	1.00
262562--262595	17	2.0	18	88	11	54	44	17	14	23	1.86
265805--265845	21	2.0	22	85	9	59	58	4	2	34	1.32
273142--273192	20	2.6	19	81	9	66	43	7	5	43	1.57
273146--273205	20	3.0	20	81	11	63	41	5	6	46	1.52
276943--277075	29	4.8	29	66	20	77	54	13	5	26	1.60
276939--277106	81	2.1	81	95	0	300	54	12	4	28	1.58
290558--290590	17	1.9	18	88	11	52	60	15	0	24	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297362--297395	2	17.0	2	100	0	68	0	50	0	50	1.00
304201--304450	125	2.0	125	99	0	491	40	9	12	38	1.74
311992--312024	16	2.0	17	88	5	50	51	9	0	39	1.34
313306--313455	74	2.0	74	97	0	282	24	13	14	48	1.78
313881--313931	21	2.4	21	86	0	75	29	3	11	54	1.54
318841--318888	24	2.0	25	83	4	62	56	8	0	35	1.30
326196--326230	17	2.1	17	88	0	52	51	0	0	48	1.00
335830--335918	30	2.9	30	81	5	90	64	2	4	29	1.25
337186--337235	23	2.2	22	82	13	57	60	10	0	30	1.30
355158--355229	23	3.2	22	72	7	65	51	9	8	30	1.64
355137--355242	44	2.5	44	85	3	144	52	10	8	28	1.64
355514--355549	11	3.2	11	88	4	54	44	0	2	52	1.15
360634--360671	2	19.0	2	100	0	76	50	0	0	50	1.00
362970--363030	32	1.9	32	82	0	77	49	3	6	40	1.45
363717--363746	3	10.0	3	100	0	60	33	0	0	66	0.92
364182--364263	30	2.7	30	71	16	71	40	2	4	52	1.36
367326--367374	25	2.0	25	84	8	64	61	4	0	34	1.15
367335--367387	16	3.1	18	73	13	58	54	1	0	43	1.11
367382--367410	2	15.0	2	92	7	51	48	0	0	51	1.00
368385--368428	13	3.1	14	75	12	54	34	0	4	61	1.16
372151--372256	23	4.6	23	70	6	81	12	20	22	44	1.85
374751--374780	13	2.2	13	94	5	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374751--374780	7	4.4	7	91	8	53	70	0	0	30	0.88
386418--386514	43	2.3	43	96	0	176	30	4	12	52	1.57
394241--394296	29	1.9	29	82	13	71	42	1	5	50	1.35
396006--396042	4	9.8	4	88	11	60	27	21	0	51	1.48
399566--399624	29	2.0	29	83	0	73	30	3	8	57	1.45
419764--419795	2	16.5	2	93	6	57	50	0	0	50	1.00
422088--422159	29	2.6	26	75	16	72	37	5	2	54	1.39
426697--426731	6	5.8	6	100	0	70	51	0	34	14	1.42
427778--427828	20	2.5	20	84	6	59	60	7	0	31	1.25
427793--427891	45	2.2	44	80	10	103	51	4	1	43	1.27
429789--429815	2	13.5	2	100	0	54	48	0	0	51	1.00
454295--454333	16	2.4	16	82	0	51	35	12	17	33	1.88
463275--463318	14	2.8	16	80	16	56	52	0	0	47	1.00
463492--463527	11	3.3	11	84	0	54	66	8	2	22	1.31
465120--465153	6	5.7	6	100	0	68	67	14	17	0	1.23

Tables:   1

The End!