Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010984.1 Kokia drynarioides strain JFW-HI SEQ_125954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2733
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Found at i:554 original size:216 final size:215
Alignment explanation
Indices: 1--2728 Score: 3004
Period size: 216 Copynumber: 12.7 Consensus size: 215
* * *
1 TCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
66 ACTTGTCAAACATTTACTA-TATCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCAT
66 ACTTGTCAAACATTTA-TAGT-TCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
* * * * * *
130 TTCTTCGACCAATTTTTCGAAAATTCCATGATTGGGATATCACATCATTTGGTCTAAATAGTTTG
129 TCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG
*
195 TCATTTTGTAAACAACTTTTGG
194 TCATTTTGTAAAAAACTTTTGG
* * ** * * *
217 TCTATGAATTAAAAACTTTTTTAC--GAGAATAGTTTCTCAATTGGTTCTTGGACAAACTTTCAA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* ** * * *
280 AGTTGTCAAACATTTATGAGTTC-TTTATTAACTTCATTTTCTGAGAGTATTTAATACGATCCAT
66 ACTTGTCAAACATTTAT-AGTTCTTTTA-TAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
** * * *
344 TCCTTCGACTTATTTTTCGAACATTTCATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTG
129 TCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG
* * *
409 GCATGTTGTAAAAAACTTTAGG
194 TCATTTTGTAAAAAACTTTTGG
* * * * * *
431 TCTTTGATTTAAAAACTATTTTATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* ** * *
496 ACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTTTGTGAGTATTCAATACGATCCATT
66 ACTTGTCAAACATTTAT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * * *
561 CCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAATGTTTGT
130 CCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGT
*
626 CATTTTGTAAAAAGCTTTTGG
195 CATTTTGTAAAAAACTTTTGG
* * * *
647 TCTTTGAATTAAAATCTTTTTTACGTGAGAATTTTTTCTCTCTTGGTTCTTAGACGAACTTCTGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
712 ACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATT
66 ACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * *
777 CCTTC-AGCCAATTTTTCAAACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTG
130 CCTTCGA-CCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG
* *
841 TCATTTTGCAAACAACTTTTGG
194 TCATTTTGTAAAAAACTTTTGG
* ** * *
863 TCTTTGAATTAAAAACTTTATTACGAAAGAATTGTTTCTCTCTTGGCTCTTGGACAAACTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * *
928 A-TTGGTTAAACATTTACAAGTTCTTTCATAACTTCGGTTCCTGAGAGGT-TTCAAGACGATCCA
66 ACTT-GTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGA-GTATTCAAGACGATCCA
* * * * * *
991 TTCCTTTGACCAATTTTCCGCATATTCCATTATCGGGAAATCGCATTATTTGGTC-AAAATAGTT
128 TTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTT
*
1055 TGTCATTTTGTAAACAACTTTTGG
192 TGTCATTTTGTAAAAAACTTTTGG
* * * *
1079 TCTTTGAATTAAATACTTTTTTACGTGAGAATTGTTGC-CTTCTT-GTAC--GGAC--A--TACG
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCCG
* * * * * * * * *
1136 AACTAGTCAAACTTTTACAAGTTCTATTATAACTTTGGTTCTTGAGCGCATTCAAGACGATCCAC
65 AACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
* * * *
1201 TCCGTT-GACCATTTTTTCGAAGATTCCATGATCGGGAAATCACATCATTTGGTCTAAAACGTTT
129 TCC-TTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTT
* *
1265 GGCATTTTGTAAAAAGCTTTTGG
193 GTCATTTTGTAAAAAACTTTTGG
* * *
1288 TCTTTGAATTAAAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
*
1353 ACTTGTCAAACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATT
66 ACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * * * * *
1418 CCTTTGACCAA-TTTTCTGAAGATTCCATTATCGAGAAATCGTATCATTTGGT-AAAAATAGTTT
130 CCTTCGACCAATTTTTC-GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTT
1481 G-CGA-TTTGTAAATAAA-TTTTGG
193 GTC-ATTTTGTAAA-AAACTTTTGG
* * ** * *
1503 TCTTTGACTTAAAAACTTTTTTAC------A-----T-T-AC---AATCTTGGACGAAGTTTCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * *
1552 ACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGGTCCCTGATAGTAGTCAAGATGATCCATT
66 ACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * * * *
1617 CCTTCGACCAATTTTTCGATCATTCCATGATCAGGAAATCGTATCATTTGGTATAAATAGTTTGT
130 CCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGT
*
1682 CATTTTGTAAACAACTTTTGG
195 CATTTTGTAAAAAACTTTTGG
* * **
1703 TCTTTGAATTAAAAACTTTTTTACGAGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTTGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * * *
1768 ACTGGTTAAACATTTACGAGTTATTTTATAACTTCGGTTCTTGAGAGTATTCAAGTCGATCCATT
66 ACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * * * *
1833 CCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTTGGTC-AAAATAGTTT
130 CCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCA-TTTGGTCTAAAA-AGTTT
* **
1897 TTCATTTTGTAATTAACTTTTGG
193 GTCATTTTGTAAAAAACTTTTGG
* * * * *
1920 TCTTTGAATTAAAAGCTTTTTTACGTTAGAATTCTTTCTTTCTTGGTTCTTGGACGAACATT-TG
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCG
* * * * *
1984 AACTTGTTAAACATTTACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCAT
65 AACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
** * * ** *
2049 TCCTTCGACTTATTTTTCAAACATTTCATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTG
129 TCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG
* *
2114 GCATGTTGTAAAAAACTTTTGG
194 TCATTTTGTAAAAAACTTTTGG
* * * * * * *
2136 TCTTTGATTTCAAAATTTTTTTACGTGACAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * *
2201 ACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATT
66 ACTTGTCAAACATTTAT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* * * *
2266 CCTTCGACCAATTTCTT-TAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAAAAGTTTG
130 CCTTCGACCAATTT-TTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG
* * * *
2330 TCATTTTATAAACAACATTTAG
194 TCATTTTGTAAAAAACTTTTGG
** * * * * *
2352 TCTTTGGTTTAAAAACTTTATTACGTGAGAATTGTTTCTCTATCGGTTCTTGGATGAAGTGT-C-
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCG
* * * * * *
2415 AAGCTTGTCAAACATTTCCTAGTTCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGATGATCCA
65 AA-CTTGTCAAACATTT-ATAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCA
* * * *
2480 TTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAACGTTT
128 TTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTT
*
2545 GTCATTTTGTAAAAAGCTTTTGG
193 GTCATTTTGTAAAAAACTTTTGG
* * * * * *
2568 TCTTTGAATTAAAATCCTTTTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTTCGA
1 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
** * * *
2633 ACTTGTCAAACATTTATTAAATCTTTTATAACTTTGGTTCCTGATAGTAGTCAAGACGATCCATT
66 ACTTGTCAAACATTTA-TAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATT
* *
2698 TCTTTGACCAATTTTTCGAACATTCCATGAT
130 CCTTCGACCAATTTTTCGAACATTCCATGAT
2729 ATGGA
Statistics
Matches: 2119, Mismatches: 328, Indels: 130
0.82 0.13 0.05
Matches are distributed among these distances:
199 124 0.06
200 46 0.02
202 1 0.00
203 1 0.00
204 1 0.00
206 1 0.00
208 1 0.00
209 162 0.08
210 11 0.01
211 2 0.00
212 4 0.00
213 10 0.00
214 171 0.08
215 65 0.03
216 1318 0.62
217 199 0.09
218 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAACATTTATAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTC
CTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTC
ATTTTGTAAAAAACTTTTGG
Found at i:1860 original size:840 final size:839
Alignment explanation
Indices: 1--2728 Score: 3263
Period size: 840 Copynumber: 3.2 Consensus size: 839
* * * *
1 TCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
66 ACTTGTCAAACATTTACTA-TATCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCAT
66 ACTGGTCAAACATTTACTAGT-TCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCAT
* * * * * *
130 TTCTTCGACCAATTTTTCGAAAATTCCATGATTGGGATATCACATCATTTGGTCTAAATAGTTTG
130 TCCTTTGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGGTCAAAATAGTTTG
* *
195 TCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTTTTTAC--GAGAATAGTTTCTCAAT
195 TCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTTTTTACGTGAGAATTGTTTC-C---
* ** * * * * * *
258 TGGTTCTTGGACAAACTTTCAAAGTTGTCAAACATTTATGAGTTCTTTATTAACTTCATTTTCTG
255 ---TTCTTGTACGGACATACGAACTTGTCAAACATTTACGAGTTCTTTA-TAACTT--TGTTCTG
323 AGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAACATTTCATGCTCGGGAAATCGCA
314 AGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAACATTTCATGCTCGGGAAATCGCA
* *
388 TCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTAGGTCTTTGATTTAAAAACTATTTT
379 TCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTTGGTCTTTGATTTAAAAACTTTTTT
453 ATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGTT
444 ATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGTT
* * *
518 CTTTTATAACTTTGGTTTTTGTGAGTATTCAATACGATCCATTCCTTTGACCAATTTTTTGAACA
509 CTTTTATAACTTTGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTCTGAACA
583 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAT-GTTTGTCATTTTGTAAAAAGC-TTTTG
574 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAAAA-CATTTTG
* * ** *
646 GTCTTTGAATTAAAATCTTTTTTACGTGAGAATTTTTTCTCTCTTGGTTCTTAGACGAA-CTTCT
638 GTCTTTGAATTAAAAACTTTTTTAC------A--TTTACAATCTT-G------GACGAAGTTTC-
*
710 GAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCA
687 GAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCA
* *
775 TTCCTTC-AGCCAATTTTTCAAACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTT
752 TTCCTTCGA-CCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
839 TGTCATTTTGCAAACAACTTTTGG
816 TGTCATTTTGTAAACAACTTTTGG
* * * *
863 TCTTTGAATTAAAAACTTTATTACGAAAGAATTGTTTCTCTCTTGGCTCTTGGACAAACTTCCGA
1 TCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * *
928 ATTGGTTAAACATTTACAAGTTCTTTCATAACTTCGGTTCCTGAGAGGT-TTCAAGACGATCCAT
66 ACTGGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGA-GTAGTCAAGACGATCCAT
* * * * *
992 TCCTTTGACCAATTTTCCGCATATTCCATTATCGGGAAATCGCATTATTTGGTCAAAATAGTTTG
130 TCCTTTGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGGTCAAAATAGTTTG
*
1057 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATACTTTTTTACGTGAGAATTGTTGCCTTCT
195 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-ACTTTTTTACGTGAGAATTGTTTCCTTCT
* * * * *
1122 TGTACGGACATACGAACTAGTCAAACTTTTACAAGTTCTATTATAACTTTGGTTCTTGAGCGCAT
259 TGTACGGACATACGAACTTGTCAAACATTTACGAGTTCT-TTATAACTTT-GTTC-TGAGAGTAT
* * * * * * * * *
1187 TCAAGACGATCCACTCCGTT-GAC-CATTTTTTCGAAGATTCCATGATCGGGAAATCACATCATT
321 TTAATACGATCCATTCC-TTCGACTTA-TTTTTCGAACATTTCATGCTCGGGAAATCGCATCACT
* * * *
1250 TGGTCTAAAACGTTTGGCATTTTGTAAAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTATGTG
384 TGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTTGGTCTTTGATTTAAAAACTTTTTTATGTG
* * ** *
1315 AGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTACT-AGTTCTTT
449 AGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTA-TGAGTTCTTT
* * *
1379 TATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTCTGAAGATTCC
513 TATAACTTTGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTCTGAACATTCC
** * * *
1444 ATTATCGAGAAATCGTATCATTTGGT-AAAAATAGTTTG-CGA-TTTGTAAATAA-ATTTTGGTC
578 ATGCTCGGGAAATCGCATCATTTGGTCTAAAATAGTTTGTC-ATTTTGTAAA-AACATTTTGGTC
*
1505 TTTGACTTAAAAACTTTTTTACA-TTACAATCTTGGACGAAGTTTCGAACTTGTCAAACATTTAC
641 TTTGAATTAAAAACTTTTTTACATTTACAATCTTGGACGAAGTTTCGAACTTGTCAAACATTTAC
* *
1569 TAGTTCTTTTACAACTTCGGTCCCTGATAGTAGTCAAGATGATCCATTCCTTCGACCAATTTTTC
706 TAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCGACCAATTTTTC
* * * *
1634 GATCATTCCATGATCAGGAAATCGTATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTT
771 GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
1699 TTGG
836 TTGG
* **
1703 TCTTTGAATTAAAAACTTTTTTACGAGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTTGA
1 TCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * * * *
1768 ACTGGTTAAACATTTACGAGTTATTTTATAACTTCGGTTCTTGAGAGTATTCAAGTCGATCCATT
66 ACTGGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATT
* * * * *
1833 CCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTTGGTCAAAATAGTTTT
131 CCTTTGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCA-TTTGGTCAAAATAGTTTG
** * * *
1898 TCATTTTGTAATTAACTTTTGGTCTTTGAATTAAAAGCTTTTTTACGTTAGAATTCTTTCTTTCT
195 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA-CTTTTTTACGTGAGAATTGTTTCCTTCT
* * *
1963 TGGTTCTTGGACGA-ACATTTGAACTTGTTAAACATTTACGAGTTCTTTTATAACTTCAGTTCCT
259 T-GTAC--GGAC-ATAC----GAACTTGTCAAACATTTACGAGTTC-TTTATAACTT-TGTT-CT
* *
2027 GAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCAAACATTTCATTCTCGGGAAATCGC
313 GAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAACATTTCATGCTCGGGAAATCGC
* *
2092 ATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTTGGTCTTTGATTTCAAAATTTTTT
378 ATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTTGGTCTTTGATTTAAAAACTTTTT
* *
2157 TACGTGACAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGT
443 TATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGT
* * *
2222 TCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCTTCGACCAA-TTTCTTTAA
508 TCTTTTATAACTTTGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTC-TGAA
* * *
2286 CATTCCATGCTTGGGAAATCACATCATTTGGTCTAAAA-AGTTTGTCATTTTATAAACAACA-TT
572 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAA-AACATTT
* ** * ** * *
2349 TAGTCTTTGGTTTAAAAACTTTATTACGTGAGAATTGTTTCTCTATCGGTTCTTGGATGAAGTGT
636 TGGTCTTTGAATTAAAAACTTT-TT---T-A-CA-----T-T-TA-C-AATCTTGGACGAAGTTT
* * *
2414 C-AAGCTTGTCAAACATTTCCTAGTTCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGATGATC
686 CGAA-CTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATC
* * *
2478 CATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-ACG
750 CATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATA-G
2542 TTTGTCATTTTGTAAA-AAGCTTTTGG
814 TTTGTCATTTTGTAAACAA-CTTTTGG
* * * * *
2568 TCTTTGAATTAAAATCCTTTTTAC-ATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTTCG
1 TCTTTGAATTAAAAACTTTTTTACGA-GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
* * ** * *
2632 AACTTGTCAAACATTTATTAAATCTTTTATAACTTTGGTTCCTGATAGTAGTCAAGACGATCCAT
65 AACTGGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCAT
* *
2697 TTCTTTGACCAATTTTTCGAACATTCCATGAT
130 TCCTTTGACCAATTTTTCGAAAATTCCATGAT
2729 ATGGA
Statistics
Matches: 1600, Mismatches: 207, Indels: 115
0.83 0.11 0.06
Matches are distributed among these distances:
839 2 0.00
840 300 0.19
841 79 0.05
842 3 0.00
844 6 0.00
845 1 0.00
846 1 0.00
847 14 0.01
848 282 0.18
849 38 0.02
850 4 0.00
853 1 0.00
854 1 0.00
855 2 0.00
856 46 0.03
857 299 0.19
858 6 0.00
861 3 0.00
862 205 0.13
863 6 0.00
864 17 0.01
865 284 0.18
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (839 bp):
TCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACTGGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATT
CCTTTGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGGTCAAAATAGTTTGT
CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTTTTTACGTGAGAATTGTTTCCTTCTTG
TACGGACATACGAACTTGTCAAACATTTACGAGTTCTTTATAACTTTGTTCTGAGAGTATTTAAT
ACGATCCATTCCTTCGACTTATTTTTCGAACATTTCATGCTCGGGAAATCGCATCACTTGGTCTA
AAAAGTTTGGCATGTTGTAAAAAACTTTTGGTCTTTGATTTAAAAACTTTTTTATGTGAGAATTG
GTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTT
TGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTCTGAACATTCCATGCTCGG
GAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAAAACATTTTGGTCTTTGAATTAA
AAACTTTTTTACATTTACAATCTTGGACGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTT
ATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCA
TGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
Done.