Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010985.1 Kokia drynarioides strain JFW-HI SEQ_125955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10380
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:223 original size:24 final size:24

Alignment explanation


    Indices: 196--251  Score: 94
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        186 GGAGAGTTCT

                 *                  
        196 CAAGAGGAAAAAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                      *             
        220 CAAGAAGAAACAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                    
        244 CAAGAAGA
          1 CAAGAAGA

        252 TACCCATACA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.70, C:0.07, G:0.20, T:0.04


Consensus pattern (24 bp):   
CAAGAAGAAAAAGAAAATGAAAAA

Found at i:3871 original size:24 final size:24

Alignment explanation


    Indices: 3844--3899  Score: 94
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       3834 GGAGAGTTCT

                 *                  
       3844 CAAGAGGAAAAAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                      *             
       3868 CAAGAAGAAACAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                    
       3892 CAAGAAGA
          1 CAAGAAGA

       3900 TACCCATACA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.70, C:0.07, G:0.20, T:0.04


Consensus pattern (24 bp):   
CAAGAAGAAAAAGAAAATGAAAAA

Found at i:6641 original size:24 final size:24

Alignment explanation


    Indices: 6614--6669  Score: 94
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       6604 GGAGAGTTCT

                 *                  
       6614 CAAGAGGAAAAAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                      *             
       6638 CAAGAAGAAACAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                    
       6662 CAAGAAGA
          1 CAAGAAGA

       6670 TACCCATACA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.70, C:0.07, G:0.20, T:0.04


Consensus pattern (24 bp):   
CAAGAAGAAAAAGAAAATGAAAAA

Found at i:10289 original size:24 final size:24

Alignment explanation


    Indices: 10262--10317  Score: 94
    Period size: 24  Copynumber: 2.3  Consensus size: 24

      10252 GGAGAGTTCT

                 *                  
      10262 CAAGAGGAAAAAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                      *             
      10286 CAAGAAGAAACAGAAAATGAAAAA
          1 CAAGAAGAAAAAGAAAATGAAAAA

                    
      10310 CAAGAAGA
          1 CAAGAAGA

      10318 TACCCATACA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.70, C:0.07, G:0.20, T:0.04


Consensus pattern (24 bp):   
CAAGAAGAAAAAGAAAATGAAAAA
Done.