genome.fa.s10989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010989.1 Kokia drynarioides strain JFW-HI SEQ_125959, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191269

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25--77	12	4.4	12	74	9	54	32	37	15	15	1.88
45--91	24	2.0	24	83	8	60	31	36	14	17	1.90
2595--2783	52	3.6	52	93	0	315	24	13	25	37	1.92
2595--2834	52	4.6	52	87	3	297	26	14	23	35	1.93
5853--5908	28	2.0	28	96	0	103	25	8	25	41	1.84
10167--10221	21	2.6	21	91	0	92	29	9	25	36	1.87
11148--11205	31	1.9	29	82	6	71	27	5	3	63	1.31
25625--25674	4	12.5	4	83	12	59	22	2	0	76	0.89
25629--25674	25	1.9	25	91	8	78	21	2	0	76	0.90
25980--26043	33	2.0	32	81	9	76	31	7	7	53	1.58
26041--26074	12	2.8	12	90	0	50	41	0	0	58	0.98
27194--27224	13	2.5	13	94	5	55	58	12	0	29	1.35
27807--27842	15	2.5	14	86	8	54	0	13	0	86	0.58
27807--27839	8	4.2	8	84	7	50	0	12	0	87	0.53
32323--32353	13	2.5	13	94	5	55	58	12	0	29	1.35
37049--37127	1	79.0	1	69	0	50	84	2	12	0	0.71
37058--37127	6	12.7	6	78	14	71	84	1	14	0	0.70
37049--37127	14	5.3	15	78	15	76	84	2	12	0	0.71
37052--37128	22	3.5	22	81	13	88	83	2	14	0	0.76
37050--37127	10	8.4	9	78	14	79	84	2	12	0	0.72
37060--37127	27	2.5	27	86	11	95	83	1	14	0	0.71
38051--38435	101	3.8	101	77	7	388	37	17	17	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38051--38511	202	2.3	201	81	6	515	37	17	17	27	1.93
39895--39938	4	11.0	4	80	9	54	20	2	2	75	1.03
40295--40342	3	16.3	3	79	12	55	35	2	0	62	1.07
40302--40384	29	2.8	29	80	7	78	26	3	4	65	1.30
40311--40359	20	2.6	19	83	6	55	24	2	4	69	1.17
46764--46828	3	21.7	3	100	0	130	67	0	0	32	0.91
49822--49854	9	3.3	10	87	12	50	51	0	0	48	1.00
50003--50037	17	2.1	17	94	0	61	80	5	5	8	1.03
56294--56377	33	2.4	33	84	9	105	52	1	0	46	1.08
56979--57046	9	7.6	9	73	18	61	45	0	0	54	0.99
56972--57068	37	2.6	38	90	3	151	49	1	0	49	1.07
56972--57070	17	5.1	21	68	19	72	50	1	0	48	1.07
56991--57070	20	4.0	21	70	15	62	51	1	0	47	1.08
57587--57657	21	3.4	21	73	7	72	22	1	30	45	1.61
58644--58747	27	3.9	27	88	0	145	42	12	25	20	1.87
61974--62037	30	2.3	29	76	12	71	35	4	6	53	1.47
62111--62152	19	2.2	19	86	0	57	38	2	0	59	1.10
62104--62144	17	2.4	18	80	12	50	31	2	0	65	1.05
62218--62354	71	1.9	72	84	1	186	40	7	8	44	1.62
65530--65572	22	2.2	20	84	16	54	67	2	11	18	1.32
65640--65888	58	4.3	57	77	9	202	38	2	22	37	1.66
65640--65888	29	8.6	29	74	12	179	38	2	22	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65776--65903	29	4.3	29	85	3	159	33	0	25	39	1.62
66998--67066	20	3.4	19	77	16	59	33	1	2	62	1.19
68173--68674	78	6.4	78	79	4	411	25	18	30	26	1.98
68190--68614	39	10.9	39	67	7	164	24	17	31	26	1.97
68190--68674	156	3.1	155	79	4	492	25	17	30	25	1.97
68178--68674	39	12.7	39	67	5	135	25	18	30	25	1.98
68659--68690	16	2.0	16	100	0	64	25	12	37	25	1.91
68581--68768	94	2.0	94	83	2	234	29	17	28	25	1.97
80067--80314	30	8.4	29	77	7	173	37	2	24	35	1.69
80095--80314	30	7.4	30	78	7	198	37	2	24	36	1.68
80062--80314	60	4.3	59	79	9	214	36	2	25	35	1.71
80242--80405	30	5.5	30	85	6	174	34	3	21	40	1.69
80210--80403	60	3.3	58	80	10	189	34	4	22	39	1.73
81924--81984	26	2.5	24	83	5	68	45	1	4	47	1.34
95066--95629	122	4.6	123	83	6	648	23	23	16	37	1.93
95066--95643	246	2.4	244	82	6	679	23	23	16	37	1.93
95861--96187	50	6.6	50	77	3	286	20	31	14	33	1.93
95859--96190	99	3.4	99	80	4	357	20	31	15	33	1.93
97140--97177	6	6.5	6	85	14	53	0	13	2	84	0.73
102313--102355	23	1.9	23	85	4	61	53	4	16	25	1.62
106369--106414	23	2.0	23	95	0	83	30	23	4	41	1.74
116828--116862	18	1.9	18	94	0	61	37	5	11	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116930--117022	45	2.1	45	89	4	143	41	7	10	39	1.68
117144--117184	22	1.9	22	90	5	66	26	19	34	19	1.96
118451--118490	16	2.4	17	87	8	64	72	12	0	15	1.12
119649--119716	29	2.4	29	76	11	72	32	11	23	32	1.91
124464--125002	138	3.9	138	88	1	774	31	14	23	30	1.94
131808--131869	27	2.4	25	76	15	63	3	32	3	61	1.28
131814--131852	14	2.5	15	88	12	53	2	33	2	61	1.23
134843--134889	22	2.1	22	100	0	94	44	10	12	31	1.77
137737--137779	18	2.4	18	88	0	59	25	18	18	37	1.94
142174--142334	52	3.1	50	78	7	162	32	24	14	27	1.95
153869--154113	52	4.7	51	78	7	235	31	24	15	28	1.96
153871--154113	104	2.3	104	81	5	276	30	24	16	28	1.96
167530--167580	21	2.8	17	74	23	50	15	9	13	60	1.58
174183--174213	15	2.1	15	100	0	62	12	19	19	48	1.81
174736--174760	2	12.5	2	100	0	50	52	48	0	0	1.00
175392--175468	14	5.3	15	75	20	67	38	6	0	54	1.26
175352--175456	25	4.1	26	74	9	90	41	5	0	52	1.25
175407--175460	27	2.0	27	85	3	72	42	7	0	50	1.30
179494--179523	14	2.1	14	93	0	51	53	30	0	16	1.44
184314--184358	22	2.0	22	83	8	56	35	4	15	44	1.67
184807--184907	36	2.8	36	92	0	166	36	15	26	20	1.93
185437--185491	21	2.4	24	88	8	80	16	10	32	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189275--189325	21	2.5	20	75	12	50	35	21	11	31	1.90
189379--189441	21	2.8	22	73	17	58	42	25	6	25	1.78
190993--191048	17	3.4	17	87	2	78	44	0	1	53	1.11
191086--191150	15	4.3	15	75	7	69	44	26	13	15	1.84
191082--191150	30	2.3	30	82	5	95	44	24	13	17	1.84

Tables:   1

The End!