genome.fa.s10990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010990.1 Kokia drynarioides strain JFW-HI SEQ_125960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36044

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163--216	3	18.0	3	79	7	56	37	5	0	57	1.22
814--864	17	2.9	17	91	2	75	54	1	0	43	1.11
1246--1351	39	2.7	39	85	2	133	23	20	31	24	1.98
1593--2065	49	9.6	49	70	10	329	18	26	19	35	1.95
1591--2067	98	4.9	98	88	2	652	18	26	19	35	1.95
3685--3715	15	2.1	15	100	0	62	29	0	25	45	1.54
13132--13156	12	2.1	12	100	0	50	56	8	8	28	1.57
13377--13659	59	4.8	59	83	5	299	42	2	22	32	1.66
13480--13682	29	6.9	29	82	7	198	42	1	22	33	1.63
13377--13691	59	5.3	59	81	8	279	40	2	24	33	1.67
14813--14868	3	18.3	3	78	7	51	35	5	0	58	1.21
15532--15599	17	3.9	17	86	1	82	52	2	1	42	1.25
15682--15762	28	2.9	28	81	9	85	27	28	11	33	1.91
21316--21576	59	4.4	59	80	7	255	33	23	1	40	1.66
21325--21527	29	6.9	29	81	7	198	33	22	1	42	1.63
21851--21875	12	2.1	12	100	0	50	28	8	8	56	1.57
22728--22754	2	13.5	2	100	0	54	48	0	0	51	1.00
28417--28591	96	1.8	96	84	7	239	36	14	18	29	1.91
28830--29050	59	3.8	59	79	13	188	33	3	28	34	1.73
28918--29383	29	15.9	28	75	11	346	31	2	29	35	1.70
28919--29382	59	7.9	59	85	3	535	32	2	29	35	1.71
31367--31474	55	1.9	56	86	5	155	44	1	1	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31368--31465	27	3.5	27	71	12	81	42	2	2	53	1.24
31435--31496	18	3.3	18	80	8	70	41	1	4	51	1.33
32001--32059	23	2.6	23	81	7	59	61	6	1	30	1.32
32019--32066	23	2.1	23	100	0	96	52	12	0	35	1.40

Tables:   1

The End!