Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010991.1 Kokia drynarioides strain JFW-HI SEQ_125961, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2633
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33


Found at i:2143 original size:20 final size:20

Alignment explanation


    Indices: 2107--2144  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2097 TTTTAATTCA

                        *       
       2107 TAAATATTCAAGTTTTGACT
          1 TAAATATTCAAGATTTGACT

                               
       2127 TAAATTATTCAA-ATTTGA
          1 TAAA-TATTCAAGATTTGA

       2145 AATAACTTGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20    9  0.56
  21    7  0.44

ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45


Consensus pattern (20 bp):   
TAAATATTCAAGATTTGACT
Done.