Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010992.1 Kokia drynarioides strain JFW-HI SEQ_125962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114116
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Warning! 513 characters in sequence are not A, C, G, or T
Found at i:178 original size:48 final size:48
Alignment explanation
Indices: 117--211 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
107 TTGTGGATTT
* * *
117 GGTTTATGAATTGGTGGAGGTTGTGGTTTTGGTTCAGAGGGCAAGTTA
1 GGTTTAGGAATTGGTGGAGGTTGCGGCTTTGGTTCAGAGGGCAAGTTA
* * *
165 GGTTTAGGCATTGGTGGTGGTTGCGGCTTTGGTTCAGAGGGCGAGTT
1 GGTTTAGGAATTGGTGGAGGTTGCGGCTTTGGTTCAGAGGGCAAGTT
212 TAGTGGTGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.15, C:0.07, G:0.42, T:0.36
Consensus pattern (48 bp):
GGTTTAGGAATTGGTGGAGGTTGCGGCTTTGGTTCAGAGGGCAAGTTA
Found at i:250 original size:84 final size:83
Alignment explanation
Indices: 130--290 Score: 243
Period size: 84 Copynumber: 1.9 Consensus size: 83
120 TTATGAATTG
* * *
130 GTGGAGGTTGTGGTTTTGGTTCAGAGGGCAAGTTAGGTTTAGGCATTGGTGGTGGTTGCGGCTTT
1 GTGGAGGTTGTGGTCTTGGTTCAGAGGGCAAGTTAGGTTTAGGCACTGGTAGTGGTTGCGGCTTT
195 GGTTCAGAGGGCGAGTTTA
66 GGTTCA-AGGGCGAGTTTA
* * *
214 GTGGTGGTTGTGGTCTTGGTTCAGAGGGC-GGATTAGGTTTAGGCACTGGTAGTGGTTGCGGTTT
1 GTGGAGGTTGTGGTCTTGGTTCAGAGGGCAAG-TTAGGTTTAGGCACTGGTAGTGGTTGCGGCTT
278 TGGTTCAAGGGCG
65 TGGTTCAAGGGCG
291 GATTTGGTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
83 7 0.10
84 63 0.90
ACGTcount: A:0.13, C:0.09, G:0.43, T:0.34
Consensus pattern (83 bp):
GTGGAGGTTGTGGTCTTGGTTCAGAGGGCAAGTTAGGTTTAGGCACTGGTAGTGGTTGCGGCTTT
GGTTCAAGGGCGAGTTTA
Found at i:2780 original size:41 final size:41
Alignment explanation
Indices: 2719--2855 Score: 179
Period size: 41 Copynumber: 3.4 Consensus size: 41
2709 TTTAAATAAA
*
2719 TTAGCAGCGCTTT-TCTATAAGCGCCGCTATTGCTCTGACCT
1 TTAGCGGCGCTTTCTC-ATAAGCGCCGCTATTGCTCTGACCT
* *
2760 TTAGCGGCGCTTTCTCATAAGTGCCGCTATTGCTCTGATCT
1 TTAGCGGCGCTTTCTCATAAGCGCCGCTATTGCTCTGACCT
* * *
2801 TTAGCGGCGTTTTCCCATAAGCGCCGTTATTGCTCT-ACCT
1 TTAGCGGCGCTTTCTCATAAGCGCCGCTATTGCTCTGACCT
* *
2841 TTTGCGGCGTTTTCT
1 TTAGCGGCGCTTTCT
2856 GTCCAAACGC
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 16 0.19
41 67 0.79
42 2 0.02
ACGTcount: A:0.14, C:0.28, G:0.21, T:0.37
Consensus pattern (41 bp):
TTAGCGGCGCTTTCTCATAAGCGCCGCTATTGCTCTGACCT
Found at i:4311 original size:18 final size:19
Alignment explanation
Indices: 4277--4312 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4267 TGAATACATT
*
4277 ATAATAATGAAGTTTTTCA
1 ATAATAATGAAGGTTTTCA
4296 ATAATAA-GAAGGTTTTC
1 ATAATAATGAAGGTTTTC
4313 TTTTCCAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.39
Consensus pattern (19 bp):
ATAATAATGAAGGTTTTCA
Found at i:7109 original size:17 final size:17
Alignment explanation
Indices: 7089--7174 Score: 75
Period size: 17 Copynumber: 4.9 Consensus size: 17
7079 ATTCATTTTG
*
7089 AGTTTAAATTTGATTTA
1 AGTTTAAATTTAATTTA
**
7106 AGTTTAAACTTTTCTTTTAA
1 AGTTTAAA--TTTAATTT-A
*
7126 AGTTTAAATTTAAATTA
1 AGTTTAAATTTAATTTA
*
7143 AGTTTAAATTTAAATTGA
1 AGTTTAAATTT-AATTTA
*
7161 A-TTTAAATTAAATT
1 AGTTTAAATTTAATT
7175 AAAAAATCCA
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
16 4 0.07
17 28 0.49
18 10 0.18
19 6 0.11
20 9 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (17 bp):
AGTTTAAATTTAATTTA
Found at i:7139 original size:6 final size:6
Alignment explanation
Indices: 7121--7174 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
7111 AAACTTTTCT
* *
7121 TTTAAA GTTTAAA TTTAAA -TTAAG TTTAAA TTTAAA -TTGAA TTTAAA
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7168 -TTAAA TT
1 TTTAAA TT
7175 AAAAAATCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
5 13 0.32
6 21 0.52
7 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (6 bp):
TTTAAA
Found at i:7148 original size:11 final size:11
Alignment explanation
Indices: 7129--7177 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
7119 CTTTTAAAGT
7129 TTAAATTTAAA
1 TTAAATTTAAA
*
7140 TTAAGTTTAAA
1 TTAAATTTAAA
* *
7151 TTTAAATTGAAT
1 -TTAAATTTAAA
7163 TTAAA-TTAAA
1 TTAAATTTAAA
7173 TTAAA
1 TTAAA
7178 AAATCCAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
10 8 0.26
11 15 0.48
12 8 0.26
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:7865 original size:3 final size:3
Alignment explanation
Indices: 7857--7942 Score: 104
Period size: 3 Copynumber: 28.7 Consensus size: 3
7847 ACATTGAATG
*
7857 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT GAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * *
7903 -AT GAT AAT ATT AAT AAT AAC AAT AAT GAAT AAT -AT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
7943 ATAAAAAAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
2 4 0.06
3 63 0.88
4 5 0.07
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9104 original size:29 final size:29
Alignment explanation
Indices: 9061--9344 Score: 138
Period size: 30 Copynumber: 9.6 Consensus size: 29
9051 GAAGGTCCCT
* *
9061 AAACTATCCAAAAATT-ATGTTTTGACCCCC
1 AAACT-TCAAAAAATTCAT-TTTTGACCCCA
9091 AAACTTCAAAAAATTCCATTTTTGACCCCA
1 AAACTTCAAAAAATT-CATTTTTGACCCCA
*** *
9121 AAACTTTTGAAAATTACCA-TTTT-ACCCCT
1 AAACTTCAAAAAATT--CATTTTTGACCCCA
* * * *
9150 AAATTTCCAAAAATTCAATTTTTCACTCCA
1 AAACTTCAAAAAATTC-ATTTTTGACCCCA
**
9180 AAACTTTC-AAAAATTACCA-TTTT-ACCCTT
1 AAAC-TTCAAAAAATT--CATTTTTGACCCCA
* *
9209 AAACTTCCAAAAAATTCCA-TTTTGACCTCT
1 AAACTT-CAAAAAATT-CATTTTTGACCCCA
* * *
9239 AAACTTTC-CAAAATTCCATTCTTTTACCCCT
1 AAAC-TTCAAAAAATT-CATT-TTTGACCCCA
**
9270 AAACTTTTAAAAATTCCATTTTTGACCCCA
1 AAACTTCAAAAAATT-CATTTTTGACCCCA
* *
9300 AAACTTTC-CAAAATTACATTTTT-ACCCCC
1 AAAC-TTCAAAAAATT-CATTTTTGACCCCA
* *
9329 GAACTTCCAAAAATTC
1 AAACTTCAAAAAATTC
9345 CAATTTTACC
Statistics
Matches: 205, Mismatches: 31, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
27 1 0.00
28 7 0.03
29 67 0.33
30 93 0.45
31 36 0.18
32 1 0.00
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (29 bp):
AAACTTCAAAAAATTCATTTTTGACCCCA
Found at i:9114 original size:30 final size:29
Alignment explanation
Indices: 9057--9416 Score: 220
Period size: 29 Copynumber: 12.1 Consensus size: 29
9047 CCCTGAAGGT
9057 CCCTAAACTATCCAAAAATT--ATGTTTTGAC
1 CCCTAAACT-T-CAAAAATTCCAT-TTTTGAC
*
9087 CCCCAAACTTCAAAAAATTCCATTTTTGAC
1 CCCTAAACTTC-AAAAATTCCATTTTTGAC
* **
9117 CCCAAAACTTTTGAAAATTACCA-TTTT-AC
1 CCCTAAAC-TTCAAAAATT-CCATTTTTGAC
* * *
9146 CCCTAAATTTCCAAAAATTCAATTTTTCAC
1 CCCTAAACTT-CAAAAATTCCATTTTTGAC
* *
9176 TCCAAAACTTTCAAAAATTACCA-TTTT-AC
1 CCCTAAAC-TTCAAAAATT-CCATTTTTGAC
*
9205 CCTTAAACTTCCAAAAAATTCCA-TTTTGAC
1 CCCTAAACTT-C-AAAAATTCCATTTTTGAC
* * *
9235 CTCTAAACTTTCCAAAATTCCATTCTTTTAC
1 CCCTAAAC-TTCAAAAATTCCATT-TTTGAC
*
9266 CCCTAAACTTTTAAAAATTCCATTTTTGAC
1 CCCTAAAC-TTCAAAAATTCCATTTTTGAC
* * *
9296 CCCAAAACTTTCCAAAATTACATTTTT-AC
1 CCCTAAAC-TTCAAAAATTCCATTTTTGAC
** *
9325 CCCCGAACTTCCAAAAATTCCAATTTT-AC
1 CCCTAAACTT-CAAAAATTCCATTTTTGAC
* * *
9354 CTCGAAGCTTTCAAAAATTACCA-TTTT-AC
1 CCCTAAAC-TTCAAAAATT-CCATTTTTGAC
* ** *
9383 CCCTGGATGTTCAAAATTTCCATTTTTGATC
1 CCCT-AAACTTCAAAAATTCCATTTTTGA-C
9414 CCC
1 CCC
9417 ATTTTTCTAA
Statistics
Matches: 264, Mismatches: 43, Indels: 45
0.75 0.12 0.13
Matches are distributed among these distances:
28 12 0.05
29 106 0.40
30 103 0.39
31 43 0.16
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTCAAAAATTCCATTTTTGAC
Found at i:9162 original size:59 final size:59
Alignment explanation
Indices: 9080--9504 Score: 348
Period size: 59 Copynumber: 7.2 Consensus size: 59
9070 AAAAATTATG
* * * **
9080 TTTTGACCCCCAAACTTCAAAAAATTCCATTTTTGACCCCAAAACTTTTGAAAATTACCA
1 TTTT-ACCCCTAAATTTCCAAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
* * *
9140 TTTTACCCCTAAATTTCCAAAAATTCAATTTTTCACTCCAAAACTTTCAAAAATTACCA
1 TTTTACCCCTAAATTTCCAAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
* * * * *
9199 TTTTACCCTTAAACTTCCAAAAAATTCCA-TTTTGACCTCTAAACTTTCCAAAATT-CCA
1 TTTTACCCCTAAATTTCC-AAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
* *
9257 TTCTTTTACCCCTAAACTTT-TAAAAATTCCATTTTTGACCCCAAAACTTTCCAAAATTA-CA
1 ---TTTTACCCCTAAA-TTTCCAAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
** * * * * *
9318 TTTTTACCCCCGAACTTCCAAAAATTCCAATTTT-ACCTCGAAGCTTTCAAAAATTACCA
1 -TTTTACCCCTAAATTTCCAAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
** * ** *
9377 TTTTACCCCTGGATGTT-CAAAATTTCCATTTTTGATCCCC--ATTTTTCTAAAAATTACCG
1 TTTTACCCCTAAAT-TTCCAAAAATTCCATTTTTGA-CCCCAAAACTTTC-AAAAATTACCA
* * * * * *
9436 TTTTA-CCCTCGAATGT-CTAAAATTCCATTTTTTAACCCCTAAACTTTCCCAAAATTACCA
1 TTTTACCCCT-AAATTTCCAAAAATTCCA-TTTTTGACCCCAAAACTTT-CAAAAATTACCA
*
9496 TTTTGCCCC
1 TTTTACCCC
9505 CGATAGTCCA
Statistics
Matches: 296, Mismatches: 50, Indels: 37
0.77 0.13 0.10
Matches are distributed among these distances:
58 71 0.24
59 138 0.47
60 43 0.15
61 42 0.14
62 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (59 bp):
TTTTACCCCTAAATTTCCAAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACCA
Found at i:9524 original size:28 final size:28
Alignment explanation
Indices: 9484--9545 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
9474 CTAAACTTTC
*
9484 CCAAAATTACCATTTTGCCCCCGA-TAGT
1 CCAAAATTACCATTTAGCCCCCGAGTA-T
9512 CCAAAATTACCATTTAGCCCCCGAGTAT
1 CCAAAATTACCATTTAGCCCCCGAGTAT
9540 CCAAAA
1 CCAAAA
9546 AGTCTCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 30 0.94
29 2 0.06
ACGTcount: A:0.34, C:0.32, G:0.10, T:0.24
Consensus pattern (28 bp):
CCAAAATTACCATTTAGCCCCCGAGTAT
Found at i:9917 original size:96 final size:96
Alignment explanation
Indices: 9807--10051 Score: 391
Period size: 96 Copynumber: 2.6 Consensus size: 96
9797 AAATTTTGTG
* **
9807 CCTTAACTTACTAGGTGCAATTTTTCTTTAAATTTAAATAATCGAATACCCTTAATCGAGGCAAT
1 CCTTAACTTACTAGGTGCAATTTTTCTTCAAATCGAAATAATCGAATACCCTTAATCGAGGCAAT
*
9872 GTTTCCTTATCTCTGATTCTGAAAAATTGCA
66 GTTTCCTTATCTCCGATTCTGAAAAATTGCA
9903 CCTTAACTTACTAGGTGCAATTTTTCTTCAAATCGAAATAATCGAATACCCTTAATCGAGGCAAT
1 CCTTAACTTACTAGGTGCAATTTTTCTTCAAATCGAAATAATCGAATACCCTTAATCGAGGCAAT
* *
9968 GTTTCCTTATCTCCGATTCTGAAAATTTGCG
66 GTTTCCTTATCTCCGATTCTGAAAAATTGCA
** * * *
9999 CCTTAACTTACTAGGTGCAACCTTTCTTCAAATCGAGATAATCAAATATCCTT
1 CCTTAACTTACTAGGTGCAATTTTTCTTCAAATCGAAATAATCGAATACCCTT
10052 TTCCAAAATT
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 138 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (96 bp):
CCTTAACTTACTAGGTGCAATTTTTCTTCAAATCGAAATAATCGAATACCCTTAATCGAGGCAAT
GTTTCCTTATCTCCGATTCTGAAAAATTGCA
Found at i:23812 original size:59 final size:61
Alignment explanation
Indices: 23679--23813 Score: 161
Period size: 59 Copynumber: 2.2 Consensus size: 61
23669 ATAAATTTAG
* * * * *
23679 GTATCAAATTGAATCTTAAAAGAAAGTTTAGGTATCAAATTAAGAAAAAATGTTAAGTTTAA
1 GTATCAAATTGGATCTCAAAAGAAAGTTTAGGTATCAAATT-AGAAAAAATGTCAAATTCAA
*
23741 ATATCAAATTGGATC-CAAAA-AAAGTTTAGGTA-CTAAATT-GAAAAAAGTGTCAAATTCAA
1 GTATCAAATTGGATCTCAAAAGAAAGTTTAGGTATC-AAATTAGAAAAAA-TGTCAAATTCAA
23800 GTATCAAATTGGAT
1 GTATCAAATTGGAT
23814 AAAAAATTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
58 7 0.11
59 23 0.36
60 17 0.27
61 4 0.06
62 13 0.20
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (61 bp):
GTATCAAATTGGATCTCAAAAGAAAGTTTAGGTATCAAATTAGAAAAAATGTCAAATTCAA
Found at i:23843 original size:55 final size:57
Alignment explanation
Indices: 23714--23853 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 57
23704 GTTTAGGTAT
* * * **
23714 CAAATTAAGAAAAAATGTTAAGTTTAAATATCAAATTGGATCCAAAAAAAGTTTAGGTAC
1 CAAATTAA-AAAAAGTGTCAAGTTCAAATATCAAATTGGAT-C-AAAAAAGTTTAAATAC
* * * *
23774 TAAATTGAAAAAAGTGTCAAATTCAAGTATCAAATTGGAT-AAAAAA-TTTAAATAC
1 CAAATTAAAAAAAGTGTCAAGTTCAAATATCAAATTGGATCAAAAAAGTTTAAATAC
*
23829 CAAATTAAAAAAAGTATCAAGTTCA
1 CAAATTAAAAAAAGTGTCAAGTTCA
23854 GGGACCAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
55 28 0.42
56 6 0.09
59 27 0.40
60 6 0.09
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (57 bp):
CAAATTAAAAAAAGTGTCAAGTTCAAATATCAAATTGGATCAAAAAAGTTTAAATAC
Found at i:24269 original size:55 final size:55
Alignment explanation
Indices: 24198--24306 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
24188 AACAAAATAA
* * *
24198 AAAACATAACCATTAAATAAGAAGTTAAATATAAAATTGGTACATAAATTTATCC
1 AAAACATAACCATTAAATAAAAAATTAAATATAAAATTGATACATAAATTTATCC
* *
24253 AAAATATAACCATTAAATAAAAAATTAAATATAAAATTGATATATAAATTTATC
1 AAAACATAACCATTAAATAAAAAATTAAATATAAAATTGATACATAAATTTATC
24307 TATTTTTTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (55 bp):
AAAACATAACCATTAAATAAAAAATTAAATATAAAATTGATACATAAATTTATCC
Found at i:25683 original size:12 final size:13
Alignment explanation
Indices: 25666--25709 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
25656 GGGTTTGAAG
25666 GAAAAAAAA-AAA
1 GAAAAAAAAGAAA
25678 GAAAAAAAAGAAA
1 GAAAAAAAAGAAA
* *
25691 AAAAAAAATAGATA
1 GAAAAAAA-AGAAA
25705 GAAAA
1 GAAAA
25710 CGAGGTAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 9 0.33
13 10 0.37
14 8 0.30
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (13 bp):
GAAAAAAAAGAAA
Found at i:25684 original size:9 final size:9
Alignment explanation
Indices: 25670--25695 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
25660 TTGAAGGAAA
25670 AAAAAAAAG
1 AAAAAAAAG
25679 AAAAAAAAG
1 AAAAAAAAG
25688 AAAAAAAA
1 AAAAAAAA
25696 AAATAGATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:31906 original size:18 final size:19
Alignment explanation
Indices: 31880--31915 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
31870 TTCTTCTCGT
31880 AAATAATATAATTTTTAAA
1 AAATAATATAATTTTTAAA
31899 AAAT-ATATAATTTTTAA
1 AAATAATATAATTTTTAA
31916 TTATTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATAATATAATTTTTAAA
Found at i:33393 original size:19 final size:20
Alignment explanation
Indices: 33342--33396 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
33332 TTAATAAAGT
*
33342 ATTAATATATTATATTTAAAAC
1 ATTAATATA-AATA-TTAAAAC
* *
33364 ATTATTTTAAATATTAAAA-
1 ATTAATATAAATATTAAAAC
33383 ATTAATATAAATAT
1 ATTAATATAAATAT
33397 AAGGCGAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 6 0.21
21 3 0.11
22 7 0.25
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAATATAAATATTAAAAC
Found at i:35070 original size:22 final size:21
Alignment explanation
Indices: 35045--35086 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
35035 AATTTTCCCT
35045 TTTTATTCTTTCAAAATATTTG
1 TTTTATTCTTT-AAAATATTTG
* *
35067 TTTTTTTCTTTAAATTATTT
1 TTTTATTCTTTAAAATATTT
35087 TTTAAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTATTCTTTAAAATATTTG
Found at i:42564 original size:12 final size:12
Alignment explanation
Indices: 42547--42572 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42537 AAATATCATT
42547 AATAAATAAACG
1 AATAAATAAACG
42559 AATAAATAAACG
1 AATAAATAAACG
42571 AA
1 AA
42573 CTTGTTCGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (12 bp):
AATAAATAAACG
Found at i:44536 original size:30 final size:29
Alignment explanation
Indices: 44501--44813 Score: 258
Period size: 30 Copynumber: 10.6 Consensus size: 29
44491 GAGAATTTGA
* *
44501 GGTCAAAATGTAATTTTGGAAAAAATTAAG
1 GGTCAAAATGTAATTTTGG-AAAAGTTTAG
*
44531 GGTCAAAATGTAATTTTAAGG-AATGTTTAG
1 GGTCAAAATGTAATTTT--GGAAAAGTTTAG
*
44561 GGTCAAAATGTGATTTTAGG--AAGTTTAGG
1 GGTCAAAATGTAATTTT-GGAAAAGTTTA-G
* * * *
44590 GGTTAAAATATGATTTTGGGAAAGTTTAG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAG
*
44619 TGGTTAAAATGTAATTTTTGG-AAAGTTTAG
1 -GGTCAAAATGTAA-TTTTGGAAAAGTTTAG
* *
44649 AGGTCAAAATGCAATTTTGGAAAAGTTTGG
1 -GGTCAAAATGTAATTTTGGAAAAGTTTAG
*
44679 AGGTCAAAATGCAATTTTGGAAAAGTTTGAG
1 -GGTCAAAATGTAATTTTGGAAAAGTTT-AG
* * * * * * *
44710 AGTTAAATTTTAATTTTAGAAAAGTTCAA
1 GGTCAAAATGTAATTTTGGAAAAGTTTAG
* * *
44739 GGTTAAAATGTAGTTTTAGAAAAGTTT-G
1 GGTCAAAATGTAATTTTGGAAAAGTTTAG
* * *
44767 AGGTCAAAATGTAATTTTTGAAAGGTTTGG
1 -GGTCAAAATGTAATTTTGGAAAAGTTTAG
*
44797 GGTCAAAATGCAATTTT
1 GGTCAAAATGTAATTTT
44814 TAAGTAAATT
Statistics
Matches: 239, Mismatches: 33, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
28 8 0.03
29 88 0.37
30 134 0.56
31 7 0.03
32 2 0.01
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.36
Consensus pattern (29 bp):
GGTCAAAATGTAATTTTGGAAAAGTTTAG
Found at i:45751 original size:12 final size:12
Alignment explanation
Indices: 45720--45758 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
45710 TCCTTTTTAT
45720 TATTATTTATTA
1 TATTATTTATTA
*
45732 T-GTATTTATTA
1 TATTATTTATTA
*
45743 TATTATTTAATA
1 TATTATTTATTA
45755 TATT
1 TATT
45759 TAATGAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:46996 original size:99 final size:99
Alignment explanation
Indices: 46888--47298 Score: 486
Period size: 99 Copynumber: 4.2 Consensus size: 99
46878 TTTGTTGTTA
* ** * *
46888 CGGCCTCAACCTTTCCCTTTATATCTTCATGGTGTCAGATTCGCCGTTGCGACCTCAATCC-TTC
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGGTTCGCCATTGCGACCTCAA-CCTTTC
* * *** *
46952 CCATCACATATTCTAAAGTATTAGGTTCGTTGTTG
65 CCATCACATCTTCTAAGGTACCGGGTTCGTCGTTG
* * * * * **
46987 CGGCCTCAACCTTTACTTTCATATCTTCATGGTACCGGGTTTGTCATTGCGGGCTCAACCTTTCC
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGGTTCGCCATTGCGACCTCAACCTTTCC
* *
47052 CATCACATCTTCTAAGGTACCGGGTTCGTCATTA
66 CATCACATCTTCTAAGGTACCGGGTTCGTCGTTG
** ** * *
47086 CGGCCTCAACCTTTCCCTTCATATCTTTTTGGTACCAGGTTCATCATTGTGGCCTCAACCTTTCC
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGGTTCGCCATTGCGACCTCAACCTTTCC
* *
47151 CATCACATCTTCTAAGGTATCGGGTTCGCCGTTG
66 CATCACATCTTCTAAGGTACCGGGTTCGTCGTTG
* * *
47185 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCAGGTTCGCCGTTG-TAGCCTCAACCTTTC
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGGTTCGCCATTGCGA-CCTCAACCTTTC
*
47249 CTATCACATCTTCTAAGGTACCGGGTTCG-CAGTTG
65 CCATCACATCTTCTAAGGTACCGGGTTCGTC-GTTG
47284 CGGCCTCAACCTTTC
1 CGGCCTCAACCTTTC
47299 TGTAACACCC
Statistics
Matches: 266, Mismatches: 43, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
98 3 0.01
99 263 0.99
ACGTcount: A:0.18, C:0.31, G:0.17, T:0.35
Consensus pattern (99 bp):
CGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGGTTCGCCATTGCGACCTCAACCTTTCC
CATCACATCTTCTAAGGTACCGGGTTCGTCGTTG
Found at i:47038 original size:49 final size:50
Alignment explanation
Indices: 46934--47298 Score: 353
Period size: 50 Copynumber: 7.4 Consensus size: 50
46924 AGATTCGCCG
* * * *** **
46934 TTGCGACCTCAATCC-TTCCCATCACATATTCTAAAGTATTAGGTTCGTTG
1 TTGCGGCCTCAA-CCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
* ** * * *
46984 TTGCGGCCTCAACCTTTACTTTCATATCTTC-ATGGTACCGGGTTTGTCA
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
*
47033 TTGCGGGCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
* * * ** * *
47083 TTACGGCCTCAACCTTTCCCTTCATATCTT-TTTGGTACCAGGTTCATCA
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
* * * *
47132 TTGTGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCG
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
* * * * * * *
47182 TTGCGGCCTCAACCTTTCCCTTCATATCTTC-ATGGTATCAGGTTCGCCG
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
** *
47231 TTGTAGCCTCAACCTTTCCTATCACATCTTCTAAGGTACCGGGTTCG-CA
1 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
47280 GTTGCGGCCTCAACCTTTC
1 -TTGCGGCCTCAACCTTTC
47299 TGTAACACCC
Statistics
Matches: 254, Mismatches: 56, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
49 122 0.48
50 132 0.52
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (50 bp):
TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGTCA
Found at i:47208 original size:198 final size:198
Alignment explanation
Indices: 46884--47298 Score: 537
Period size: 198 Copynumber: 2.1 Consensus size: 198
46874 TAGGTTTGTT
* ** * *
46884 GTTACGGCCTCAACCTTTCCCTTTATATCTTCATGGTGTCAGATTCGCCGTTGCGACCTCAATCC
1 GTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGATTCACCATTGCGACCTCAATCC
* ** *
46949 TTCCCATCACATATTCTAAAGTATTAGGTTCGTTGTTGCGGCCTCAACCTTTACTTTCATATCTT
66 TTCCCATCACATATTCTAAAGTATCAGGTTCGCCGTTGCGGCCTCAACCTTTACCTTCATATCTT
* * * * *
47014 CATGGTACCGGGTTTGTCATTGCGGGCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTC
131 CATGGTACCAGGTTCGCCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTC
47079 GTCA
196 G-CA
** * * * *
47083 -TTACGGCCTCAACCTTTCCCTTCATATCTTTTTGGTACCAGGTTCATCATTGTGGCCTCAA-CC
1 GTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGATTCACCATTGCGACCTCAATCC
* * * *
47146 TTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCT
66 -TTCCCATCACATATTCTAAAGTATCAGGTTCGCCGTTGCGGCCTCAACCTTTACCTTCATATCT
* * * *
47211 TCATGGTATCAGGTTCGCCGTTGTAGCCTCAACCTTTCCTATCACATCTTCTAAGGTACCGGGTT
130 TCATGGTACCAGGTTCGCCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTT
47276 CGCA
195 CGCA
*
47280 GTTGCGGCCTCAACCTTTC
1 GTTACGGCCTCAACCTTTC
47299 TGTAACACCC
Statistics
Matches: 185, Mismatches: 29, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
197 4 0.02
198 181 0.98
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (198 bp):
GTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGATTCACCATTGCGACCTCAATCC
TTCCCATCACATATTCTAAAGTATCAGGTTCGCCGTTGCGGCCTCAACCTTTACCTTCATATCTT
CATGGTACCAGGTTCGCCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTC
GCA
Found at i:52232 original size:15 final size:15
Alignment explanation
Indices: 52212--52247 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
52202 TAGTAACAGG
52212 AGCTCCCTATGTGTA
1 AGCTCCCTATGTGTA
*
52227 AGCTCCCTGTGTGTA
1 AGCTCCCTATGTGTA
52242 AGCTCC
1 AGCTCC
52248 AAGTGAGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.31
Consensus pattern (15 bp):
AGCTCCCTATGTGTA
Found at i:54685 original size:29 final size:29
Alignment explanation
Indices: 54471--54816 Score: 267
Period size: 29 Copynumber: 11.8 Consensus size: 29
54461 TTTCGAAGAA
* *
54471 TTTGAGGTCAAAATGTAATTTTGGAAAAT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAG
* *
54500 TTTGGGAGTTAAAATGTAATTTTAAGG-AATG
1 TTTGGG-GTCAAAATGTAATTTT--GGAAAAG
* *
54531 TTTGGGGTCAAAATGTGATTTTGGAAAGG
1 TTTGGGGTCAAAATGTAATTTTGGAAAAG
* *
54560 TTTGAGAGTCAAAATGTAATTTTGG-GAAG
1 TTTG-GGGTCAAAATGTAATTTTGGAAAAG
* * * *
54589 TTCAGGTGT-TAAATATAATTTTAGG--AAG
1 TT-TGGGGTCAAAATGTAATTTT-GGAAAAG
* **
54617 TTTGAGGGTCAAAATG-CATTTTTTAGAAAG
1 TTTG-GGGTCAAAATGTAATTTTGGA-AAAG
*
54647 TTTGGAGGTTAAAATGTAATTTTGGAAAAG
1 TTTGG-GGTCAAAATGTAATTTTGGAAAAG
*
54677 TTTGGGGTTAAAATGTAATTTTGGAAAA-
1 TTTGGGGTCAAAATGTAATTTTGGAAAAG
* * * * *
54705 TTCTAGGGTTAAAATATAATTTTGAAAAAT
1 TT-TGGGGTCAAAATGTAATTTTGGAAAAG
* *
54735 TTTAGGGTCAAAATGTAGTTTTGGAAAAG
1 TTTGGGGTCAAAATGTAATTTTGGAAAAG
* * **
54764 TTTGAGAGTCAAAATATAAATTTT-TTAAAG
1 TTTG-GGGTCAAAATGT-AATTTTGGAAAAG
54794 TTTAGGGGTCAAAATGTAATTTT
1 TTT-GGGGTCAAAATGTAATTTT
54817 TGAGTAAAAT
Statistics
Matches: 256, Mismatches: 42, Indels: 38
0.76 0.12 0.11
Matches are distributed among these distances:
27 1 0.00
28 28 0.11
29 103 0.40
30 102 0.40
31 20 0.08
32 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (29 bp):
TTTGGGGTCAAAATGTAATTTTGGAAAAG
Found at i:54764 original size:117 final size:116
Alignment explanation
Indices: 54480--54816 Score: 328
Period size: 117 Copynumber: 2.9 Consensus size: 116
54470 ATTTGAGGTC
* * * * *
54480 AAAATGTAATTTTGGAAAATTTTGGGAGTTAAAATGTAATTTTAAGG-AATGTTTGG-GGTCAAA
1 AAAATATAATTTTGAAAAATTTTAGG-GTCAAAATGT-ATTTT--GGAAAAGTTTGGAGGTCAAA
* * * * *
54543 ATGTGATTTTGGAAAGGTTTGAGAGTCAAAATGTAATTTTGGGAAGTTCAGGTGTT
62 ATGTAATTTTGGAAAAGTTTG-GGGTCAAAATGTAATTTTGGAAAATTCAGGTGTT
* * * * ** *
54599 -AAATATAATTTT-AGGAAGTTTGAGGGTCAAAATGCATTTTTTAGAAAGTTTGGAGGTTAAAAT
1 AAAATATAATTTTGA-AAAATTTTAGGGTCAAAATGTATTTTGGA-AAAGTTTGGAGGTCAAAAT
*
54662 GTAATTTTGGAAAAGTTTGGGGTTAAAATGTAATTTTGGAAAATTCTAGG-GTT
64 GTAATTTTGGAAAAGTTTGGGGTCAAAATGTAATTTTGGAAAATTC-AGGTGTT
54715 AAAATATAATTTTGAAAAATTTTAGGGTCAAAATGTAGTTTTGGAAAAGTTT-GAGAGTCAAAAT
1 AAAATATAATTTTGAAAAATTTTAGGGTCAAAATGTA-TTTTGGAAAAGTTTGGAG-GTCAAAAT
* **
54779 ATAAATTTT-TTAAAGTTTAGGGGTCAAAATGTAATTTT
64 GT-AATTTTGGAAAAGTTT-GGGGTCAAAATGTAATTTT
54817 TGAGTAAAAT
Statistics
Matches: 178, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
116 42 0.24
117 88 0.49
118 48 0.27
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (116 bp):
AAAATATAATTTTGAAAAATTTTAGGGTCAAAATGTATTTTGGAAAAGTTTGGAGGTCAAAATGT
AATTTTGGAAAAGTTTGGGGTCAAAATGTAATTTTGGAAAATTCAGGTGTT
Found at i:55761 original size:12 final size:12
Alignment explanation
Indices: 55730--55768 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
55720 TCTTTTTTAT
55730 TATTATTTATTA
1 TATTATTTATTA
*
55742 T-GTATTTATTA
1 TATTATTTATTA
*
55753 TATTATTTAATA
1 TATTATTTATTA
55765 TATT
1 TATT
55769 TAATGCATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:55839 original size:2 final size:2
Alignment explanation
Indices: 55832--55887 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
55822 TGATTAACAA
55832 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55874 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
55888 GAATATACCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57146 original size:30 final size:30
Alignment explanation
Indices: 57112--57170 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
57102 AGAGATAAAA
* * *
57112 TATTAGAAGTAACAGTTGGAGAGAAGCCTG
1 TATTAAAAGCAACAGTTGAAGAGAAGCCTG
* *
57142 TATTAAAAGCAACCGTTGAAGAGGAGCCT
1 TATTAAAAGCAACAGTTGAAGAGAAGCCT
57171 TGGAGCTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (30 bp):
TATTAAAAGCAACAGTTGAAGAGAAGCCTG
Found at i:57368 original size:22 final size:23
Alignment explanation
Indices: 57342--57385 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
57332 TGTGAAGTAA
57342 TTTAATAAAAATTAAAT-TAAAT
1 TTTAATAAAAATTAAATATAAAT
* *
57364 TTTAATATATATTAAATATAAA
1 TTTAATAAAAATTAAATATAAA
57386 CAAGTGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAAAAATTAAATATAAAT
Found at i:58673 original size:410 final size:409
Alignment explanation
Indices: 57141--61112 Score: 5091
Period size: 410 Copynumber: 9.7 Consensus size: 409
57131 AGAGAAGCCT
* * * * * * *
57141 GTATTAAAAGCAACCGTTGAAGAGGAGCCTTGGAGCTTTTAAGGGCATTAAAAAGAATATCCGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTAT-TGTT
* * ** *
57206 GGTAGAGTTGAGCATTTAACAGCAACTATATGGATTGAAAATTTTCAAATTAAAAAAAAAACTAA
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATT---AAAAAAACTAA
* *
57271 AATATTTAAAACTATAAAAGAAAAAAAAAACATGTTTATTAATTTATTAAAATTTTTAATTTGTG
127 AATATTTAAAATTATAAAAG---AAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTG
* * * * *
57336 AAGTAATTTAATAAAAATTAAATTAAATTTTAATATATATTAAATATAAACAAGTGTATAATTAA
189 AAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAA
** * * * * * * *
57401 GACTGTAAAAT-AATTAAGCTTCAACGAACAAACCATTCAATTGGGTTTGTAATCTGCAACAGTT
254 GGTTGT-AAATGAATTGAGCTTGAACTAATAAACTATT-AATTGGATTTGTAATCTGCAACTGTT
* * * * * * * *
57465 GTCATATTGATTCTCATACGTTGTTTTTTCATTCTCCAAAAAGAATCCACAAAGGAATGGAAATG
317 GTCAGATTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATG
* * *
57530 AAAGTTTCAAGAATAAAAAAGAGATAAA
382 GAAGTTCCAAGAATAAAAAGGAGATAAA
* * *
57558 GTATTAAAAGTAATTGTTGGAGAGGAGCTTTGGAACATTTAAGGGCATTAAAAAGAGTATCCGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTAT-TGTT
* * *
57623 GGTGAAGTTGAACATTTAACAGCATTTATATGGATTGAAAATTTTTAAATTAAAAAAAAAAC-AA
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATT---AAAAAAACTAA
* ** *
57687 CAATATTTAAAATTATAAAAGAAAAAAACATGTTTGTTGGTTTATTAAAAATTTTAATTTGTGAA
127 -AATATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAA
* * *
57752 GTAATTTAATTAAAATTAAATTAAATTTAAATAGATATTAAATATAGACGAGTATATAATTAAGA
191 GTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGG
* * * * *
57817 TTGTAAATGAATTGAACTTGAACGAACAAA-TCATTTAGTT-GAGTTTGTAATCTGCAACTATTG
256 TTGTAAATGAATTGAGCTTGAACTAATAAACT-A-TTAATTGGA-TTTGTAATCTGCAACTGTTG
* * * *
57880 TCAGATTTATTCCCATACATTATTTTTTCATTCTCTGAAGAGAATTCACAAAGGAATGGAAATGA
318 TCAGATTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGG
* *
57945 AAGTTCTAAGAATAAAAAAGAGATAAA
383 AAGTTCCAAGAATAAAAAGGAGATAAA
*** * * * *
57972 GTATTAAAAGTAACCCATGGTGAGGAGCCTTGAAGCATTTAAGGGCATTAAAACGAGTATTTGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTA-TTGTT
* ** * * *
58037 GGTGGAGTTGAGCATTTAACAATATTTATATGGGGTCAAATTTTTTAAATTAAAAAAAAAACTAC
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATT---AAAAAAACTAA
* ** * * * *
58102 AATATTTAAAATTATAAAAGAAAAAAA-ATGTTTGTTCGTCTATTAAAAATTATCATTTGTGAAG
127 AATATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAG
* * *
58166 TAATTTAATTAAAATTAAATTAAATTTGAATATATATTAAATATAGACGAATGTATAATTAAGAT
192 TAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGT
*
58231 TGTAAATGAATTGAGCTTGAACTAATAAATTATGTAATTGGATTTGTAATCTGCAACTGTTGTCA
257 TGTAAATGAATTGAGCTTGAACTAATAAACTAT-TAATTGGATTTGTAATCTGCAACTGTTGTCA
* * *
58296 GATTGATTCCCATGCATTATTTTTTCATTCTCCAAAGAGAATTCATAAATGAATGGAAATGGAAG
321 GATTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGGAAG
*
58361 -TCCAAAAATAAAAAGGAGATAAA
386 TTCCAAGAATAAAAAGGAGATAAA
* *
58384 GTATTAAAAGTAACGGTTGGAGAGGAGCGTTGGAGCATTTAAGGGCATTAAAAAGAGTATATGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTAT-TGTT
58449 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
** *
58514 ATTTAAAATTATAAAAGAATGAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAATAA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTAA
* *
58579 TTTACA-TAAAATTAAATTAAATTTGAATAGATATTAAATATAAACGAGTGTATAATTAGGGTTG
195 TTTA-ATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTG
* *
58643 TAAATGAATTGAGCTTGAACTAATAAATTATGTAGTTGGATTTGTAATCTGCAACTGTTGTCAGA
259 TAAATGAATTGAGCTTGAACTAATAAACTAT-TAATTGGATTTGTAATCTGCAACTGTTGTCAGA
* * * * * *
58708 TTGATTCCCATGCATTATTTTTTAATTCTCTGAAGAGAATTCATAAAGTAATAGAAATGAAAG-T
323 TTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGGAAGTT
58772 CCAAGAATAAAAAGGAGATAAA
388 CCAAGAATAAAAAGGAGATAAA
* * * *
58794 GTATTAAAAGTACCCGTTGGAGAGTAGCTTTGGAGCATTTAAGGGCAATAAAAAGAGTATTCGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATT-GTT
* * *
58859 GGTGGAGTTGAACATTTAACAGCATTTATATGGATTGAAAATTTTTAAATT-AAAAAA--AATAT
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
* * * *
58921 ATTTAAAATCATAAAAGAAAAAAACATGTTTATTCATTTGTTAAAATTTTTAATTTGTGAAGTGA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTAA
*
58986 TTTAATTAAAACTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATT-AGG--GT
195 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTGT
* * * * * *
59048 ---TG---TCAGC----A--AACAAACCATTCAATTGGGTTTGTAATCTGCAACTATTGTCATAT
260 AAATGAATTGAGCTTGAACTAATAAACTATT-AATTGGATTTGTAATCTGCAACTGTTGTCAGAT
* * *
59101 TGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATGGAAGTTT
324 TGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGGAAGTTC
*
59166 CAAGAATAAAAAGGAGAAAAA
389 CAAGAATAAAAAGGAGATAAA
* * * *
59187 ATATTAAAAGTAACGGTTGGAAAGGAACTTTGCG-GCATTTAAGGGCATT-AAAAGAGTATTGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTG-GAGCATTTAAGGGCATTAAAAAGAGTATTGTT
* * * **
59250 GGTGGAGTTGAGTATTTAACAATATTTATATGGATTGAAAAATTTTAAATTAAAAAAAGAAAAAT
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
* *
59315 ATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTAAAGTTTTTAATTTGTGAAGTAA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTAA
59380 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTGT
195 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTGT
* * * * *
59445 AAATGAATTGAGTTTGAACAAATAAACTATTTAATTGGGTTTGTAATCTGCAATTGTTGTTAGAT
260 AAATGAATTGAGCTTGAACTAATAAACTA-TTAATTGGATTTGTAATCTGCAACTGTTGTCAGAT
** * * *
59510 TGATTCCGGTATATT-GTTTTTCATTCTCCGAAGAGAATT-ATGAAAGGAATGGAAATGAAAGTT
324 TGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCAT-AAAGGAATGGAAATGGAAGTT
* *
59573 CCAAGAATAAAAAGAAAATAAA
388 CCAAGAATAAAAAGGAGATAAA
* ** * * *
59595 TTATTAAAAGTAACTGTAAGAGAGTAGCCTTGGAACATTTAAGGGCATTAAAAAGAGTATTCGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATT-GTT
* * *
59660 GGTGGAGTTAAGCATTTAATATA-ATTTATATCGATTGAAAATTTTTAAATTAAAAAAACTAAAA
65 GGTGGAGTTGAGCATTTAACA-ACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAA
* *
59724 TATTTAAAATTATAAAAGAAAAAAACATGTTT-TTCATTTATTAAAATTTTTAATTTGTGATGTA
129 TATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTA
*
59788 ATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATT-AGAATT
194 ATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAG-GTT
* * * * *
59852 ATAAATGAATTGAGCTTGAACGAACAAACTGTTCAGTT-GAGTTTGTAATCTGCAACTGTTGTCA
258 GTAAATGAATTGAGCTTGAACTAATAAACTATT-AATTGGA-TTTGTAATCTGCAACTGTTGTCA
* * * * * * ** *
59916 AATTTATTCTCATACATTATTATTTTTATTCTCTGAAGAGAATTCACAAAAAAAATAGAAATGGA
321 GATTGATTCCCATACATTATT-TTTTCATTCTCCGAAGAGAATTCA-TAAAGGAATGGAAATGGA
*
59981 AGTTCCAAGAATAAAAAGAAGATAAA
384 AGTTCCAAGAATAAAAAGGAGATAAA
* * *
60007 GTATTAAAAGTAACGGTTGGAGAAGAGCTTTGGAGAATTTAAGGGCATTAAAAAGAGTATCTGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTAT-TGTT
* * *
60072 GGTGGAGTTAAGCATTTAACAACGTTTTTATGGATTGAAAATTTTTAAATTAAAAAAA--ACAAA
65 GGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTA-AAA
**
60135 TATTTAAAATTATAAAAGAATGAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTA
129 TATTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTA
* * * * *
60200 ATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATGTAGACGAATATATAATTAGGGCTG
194 ATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTG
* * * *
60265 TAAATGAATTGAGCCTGAA-TGAATAAACTATGTAGTTAGG-TTTGTAATCTACAACTGTTGTTA
259 TAAATGAATTGAGCTTGAACT-AATAAACTAT-TAATT-GGATTTGTAATCTGCAACTGTTGTCA
* * *
60328 GATTGATTCCCATACATTGTTTTTTCATTCTCCGAAGATAATTCATAAAGGAATGAAAATGGAAG
321 GATTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGGAAG
* *
60393 TTACAAGAATAAAAAAGAGATAAA
386 TTCCAAGAATAAAAAGGAGATAAA
* * *
60417 GTATTAAAAGTAACTGTTGGAGAGGAACCTTGTAGCATTTAAGGGCATTAAAAAGAGTATTGTTG
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATTGTTG
* *
60482 GTGGAGTTGAGCATTTAACAATATTTATATGGATTGAAAATTTTTAAATTAAAAAAAATAAAATA
66 GTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAATA
* *
60547 TTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAATAAT
131 TTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTAAT
* * * * *
60612 TTAATTAAAATTAAATTAAATTTAAATAGATATTAAATATATACAAGTGTATAATTAAGGCTGAA
196 TTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTGTA
* * * *
60677 AATGAATTGAACTTGAA-TGAATAGAAC-ATTCAATT-GAGTTTGTACTCTGCAATTCTTGTCAG
261 AATGAATTGAGCTTGAACT-AATA-AACTATT-AATTGGA-TTTGTAATCTGCAACTGTTGTCAG
**
60739 ATTGATTCCCATACATTGCTTTTTCATTCTCCGAAGAGAATTC-TGAAAGGAATGGAAATGGAAG
322 ATTGATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCAT-AAAGGAATGGAAATGGAAG
*
60803 TTCCAAGAATAAAAAGGAGAAAAA
386 TTCCAAGAATAAAAAGGAGATAAA
60827 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
1 GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATT-GTT
* *
60892 GGTGCAGTTGAGCATTTAACATA-ATTTATATGTATTGAAAATTTTTAAATTAAAAAAACTAAAA
65 GGTGGAGTTGAGCATTTAACA-ACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAA
* *
60956 TATTTAAAATTATAAAAGAAAAAAAAATATTT-TTTCATTTATTAAAATTTTTAATTTGTGAAGT
129 TATTTAAAATTATAAAAGAAAAAAACATGTTTATTT-ATTTATTAAAATTTTTAATTTGTGAAGT
* ** * * * *
61020 AGTTTAATTAAAATTAAATTAAATAGGAATATATATTAAATATAGACGAGTGAAAAATTAGGGTT
193 AATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTT
*
61085 GTAAATGAATTGAACTTGAA-TAAATAAA
258 GTAAATGAATTGAGCTTGAACT-AATAAA
61113 TCTCTGTTCG
Statistics
Matches: 3142, Mismatches: 345, Indels: 143
0.87 0.10 0.04
Matches are distributed among these distances:
391 50 0.02
392 107 0.03
393 61 0.02
394 121 0.04
395 3 0.00
397 2 0.00
398 4 0.00
400 2 0.00
401 2 0.00
403 3 0.00
404 2 0.00
406 3 0.00
407 118 0.04
408 105 0.03
409 312 0.10
410 834 0.27
411 278 0.09
412 423 0.13
413 213 0.07
414 361 0.11
415 4 0.00
416 2 0.00
417 132 0.04
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (409 bp):
GTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAAGGGCATTAAAAAGAGTATTGTTG
GTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAATA
TTTAAAATTATAAAAGAAAAAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAGTAAT
TTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAAGGTTGTA
AATGAATTGAGCTTGAACTAATAAACTATTAATTGGATTTGTAATCTGCAACTGTTGTCAGATTG
ATTCCCATACATTATTTTTTCATTCTCCGAAGAGAATTCATAAAGGAATGGAAATGGAAGTTCCA
AGAATAAAAAGGAGATAAA
Found at i:59319 original size:23 final size:22
Alignment explanation
Indices: 59286--59334 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
59276 TATATGGATT
59286 GAAAAATTTT-AAATTAAAAAAA
1 GAAAAATTTTAAAATT-AAAAAA
*
59308 GAAAAATATTTAAAATTATAAAA
1 GAAAAAT-TTTAAAATTAAAAAA
59331 GAAA
1 GAAA
59335 GAAACATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 7 0.29
23 12 0.50
24 5 0.21
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
GAAAAATTTTAAAATTAAAAAA
Found at i:60258 original size:821 final size:820
Alignment explanation
Indices: 57141--61112 Score: 5266
Period size: 821 Copynumber: 4.8 Consensus size: 820
57131 AGAGAAGCCT
* * * * * * *
57141 GTATTAAAAGCAACCGTTGAAGAGGAGCCTTGGAGCTTTTAAGGGCATTAAAAAGAATATCCGTT
1 GTATTAAAAGTAACTGTAGGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
* * *
57206 GGTAGAGTTGAGCATTTAACAGCAA-CTATATGGATTGAAAATTTTCAAATTAAAAAAAAAACTA
66 GGTGGAGTTGAGCATTTAACA--AATTTATATGGATTGAAAATTTTTAAATT---AAAAAAACTA
* *
57270 AAATATTTAAAACTATAAAAGAAAAAAAAAACATGTTTATTAATTTATTAAAATTTTTAATTTGT
126 AAATATTTAAAATTATAAAAG---AAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGT
* * * * *
57335 GAAGTAATTTAATAAAAATTAAATTAAATTTTAATATATATTAAATATAAACAAGTGTATAATTA
188 GAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATT-
* * * * *
57400 AGACTGTA-AAAT-AATTAAGCTTCAACGAACAAACCATTCAATTGGGTTTGTAATCTGCAACAG
252 AGAAT-TATAAATGAATTGAGCTTGAACGAACAAACCATTCAATTGAGTTTGTAATCTGCAACTG
* * * * * *
57463 TTGTCATATTGATTCTCATACGTTGTTTTTTCATTCTCCAAAAAGAATCCACAAAGGAATGGAAA
316 TTGTCAGATTGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAA
* * * ** *
57528 TGAAAGTTTCAAGAATAAAAAAGAGATAAAGTATTAAAAGTAATTGTTGGAGAGGAGCTTTGGAA
381 TGGAAGTTCCAAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTGGAG
* * * *
57593 CATTTAAGGGCATTAAAAAGAGTATCCGTTGGTGAAGTTGAACATTTAACAGCATTTATATGGAT
446 CATTTAAGGGCATTAAAAAGAGTAT-TGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGAT
* *
57658 TGAAAATTTTTAAATTAAAAAAAAAACAACAATATTTAAAATTATAAAAGAAAAAAACATGTTTG
510 TGAAAATTTTTAAATT--AAAAAAAACAA-AATATTTAAAATTATAAAAGAAAGAAACATGTTTA
** * *
57723 TTGGTTTATTAAAAATTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTAAATAGAT
572 TTTATTTATTAAAATTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGAT
* * * * * *
57788 ATTAAATATAGACGAGTATATAATTAAGATTGTAAATGAATTGAACTTGAACGAACAAA-TCATT
637 ATTAAATATAGACGAGTATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAACT-ATG
* * * * *
57852 TAGTTGAGTTTGTAATCTGCAACTATTGTCAGATTTATTCCCATACATTATTTTTTCATTCTCTG
701 TAGTTGGGTTTGTAATCTGCAACTGTTGTCAGATTGATTCCCATACATTAGTTTTTCATTCTCCG
* *
57917 AAGAGAATTCACAAAGGAATGGAAATGAAAGTTCTAAGAATAAAAAAGAGATAAA
766 AAGAGAATTCATAAAGGAATGGAAATGAAAGTTCCAAGAATAAAAAAGAGATAAA
** * * * *
57972 GTATTAAAAGTAAC-CCATGGTGAGGAGCCTTGAAGCATTTAAGGGCATTAAAACGAGTATTTGT
1 GTATTAAAAGTAACTGTA-GGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGT
** * *
58036 TGGTGGAGTTGAGCATTTAACAATATTTATATGGGGTCAAATTTTTTAAATTAAAAAAAAAACTA
65 TGGTGGAGTTGAGCATTTAACAA-ATTTATATGGATTGAAAATTTTTAAATT---AAAAAAACTA
* * * * * * *
58101 CAATATTTAAAATTATAAAAGAAAAAAA-ATGTTTGTTCGTCTATTAAAAATTATCATTTGTGAA
126 AAATATTTAAAATTATAAAAGAAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGTGAA
* *
58165 GTAATTTAATTAAAATTAAATTAAATTTGAATATATATTAAATATAGACGAATGTATAATTA-AG
191 GTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAGA-
* * * **
58229 ATTGTAAATGAATTGAGCTTGAACTAATAAATTATGT-AATTG-GATTTGTAATCTGCAACTGTT
255 ATTATAAATGAATTGAGCTTGAACGAACAAACCAT-TCAATTGAG-TTTGTAATCTGCAACTGTT
* * * * *
58292 GTCAGATTGATTCCCATGCATTATTTTTTCATTCTCCAAAGAGAATTCATAAATGAATGGAAATG
318 GTCAGATTGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATG
* *
58357 GAAG-TCCAAAAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCGTTGGAGCA
383 GAAGTTCCAAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTGGAGCA
58421 TTTAAGGGCATTAAAAAGAGTATATGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGATTG
448 TTTAAGGGCATTAAAAAGAGTAT-TGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGATTG
*
58486 AAAATTTTTAAATT-AAAAAAACTAAAATATTTAAAATTATAAAAGAATGAAACATGTTTATTTA
512 AAAATTTTTAAATTAAAAAAAAC-AAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTTA
*
58550 TTTATTAAAATTTTTAATTTGTGAAATAATTTACA-TAAAATTAAATTAAATTTGAATAGATATT
576 TTTATTAAAATTTTTAATTTGTGAAGTAATTTA-ATTAAAATTAAATTAAATTTGAATAGATATT
* * * *
58614 AAATATAAACGAGTGTATAATTAGGGTTGTAAATGAATTGAGCTTGAACTAATAAATTATGTAGT
640 AAATATAGACGAGTATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAACTATGTAGT
* * * * *
58679 TGGATTTGTAATCTGCAACTGTTGTCAGATTGATTCCCATGCATTATTTTTTAATTCTCTGAAGA
705 TGGGTTTGTAATCTGCAACTGTTGTCAGATTGATTCCCATACATTAGTTTTTCATTCTCCGAAGA
* * *
58744 GAATTCATAAAGTAATAGAAATGAAAG-TCCAAGAATAAAAAGGAGATAAA
770 GAATTCATAAAGGAATGGAAATGAAAGTTCCAAGAATAAAAAAGAGATAAA
* * * * * *
58794 GTATTAAAAGTACCCGTTGGAGAGTAGCTTTGGAGCATTTAAGGGCAATAAAAAGAGTATTCGTT
1 GTATTAAAAGTAACTGTAGGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
* * *
58859 GGTGGAGTTGAACATTTAACAGCATTTATATGGATTGAAAATTTTTAAATT-AAAAAA--AATAT
66 GGTGGAGTTGAGCATTTAACA-AATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
* * *
58921 ATTTAAAATCATAAAAGAAAAAAACATGTTTATTCATTTGTTAAAATTTTTAATTTGTGAAGTGA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGTGAAGTAA
* **
58986 TTTAATTAAAACTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAG---GGT
195 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAGAATTAT
* * * *
59048 ---TG---TCAGC----A--AACAAACCATTCAATTGGGTTTGTAATCTGCAACTATTGTCATAT
260 AAATGAATTGAGCTTGAACGAACAAACCATTCAATTGAGTTTGTAATCTGCAACTGTTGTCAGAT
*
59101 TGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATGGAAGTTT
325 TGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATGGAAGTTC
* * * *
59166 CAAGAATAAAAAGGAGAAAAAATATTAAAAGTAACGGTTGGAAAGGAACTTTGCG-GCATTTAAG
390 CAAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTG-GAGCATTTAAG
* * *
59230 GGCATT-AAAAGAGTATTGTTGGTGGAGTTGAGTATTTAACAATATTTATATGGATTGAAAAATT
454 GGCATTAAAAAGAGTATTGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTT
59294 TTAAATTAAAAAAAGA-AAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTA
519 TTAAATTAAAAAAA-ACAAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTA
*
59358 AAGTTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAG
583 AAATTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAG
* * * * *
59423 ACGAGTGTATAATTAAGGTTGTAAATGAATTGAGTTTGAACAAATAAACTATTTAATTGGGTTTG
648 ACGAGTATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAACTATGTAGTTGGGTTTG
* * ** *
59488 TAATCTGCAATTGTTGTTAGATTGATTCCGGTATATT-GTTTTTCATTCTCCGAAGAGAATT-AT
713 TAATCTGCAACTGTTGTCAGATTGATTCCCATACATTAGTTTTTCATTCTCCGAAGAGAATTCAT
*
59551 GAAAGGAATGGAAATGAAAGTTCCAAGAAT-AAAAAGAAAATAAA
778 -AAAGGAATGGAAATGAAAGTTCCAAGAATAAAAAAG-AGATAAA
* * * *
59595 TTATTAAAAGTAACTGTAAGAGAGTAGCCTTGGAACATTTAAGGGCATTAAAAAGAGTATTCGTT
1 GTATTAAAAGTAACTGTAGGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
* * *
59660 GGTGGAGTTAAGCATTTAATATAATTTATATCGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
66 GGTGGAGTTGAGCATTTAACA-AATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
*
59725 ATTTAAAATTATAAAAGAAAAAAACATGTTT-TTCATTTATTAAAATTTTTAATTTGTGATGTAA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGTGAAGTAA
59789 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAGAATTAT
195 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAGAATTAT
** * *
59854 AAATGAATTGAGCTTGAACGAACAAACTGTTCAGTTGAGTTTGTAATCTGCAACTGTTGTCAAAT
260 AAATGAATTGAGCTTGAACGAACAAACCATTCAATTGAGTTTGTAATCTGCAACTGTTGTCAGAT
* * * * * ** *
59919 TTATTCTCATACATTATTATTTTTATTCTCTGAAGAGAATTCACAAAAAAAATAGAAATGGAAGT
325 TGATTCCCATACATTGTT-TTTTCATTCTCCGAAGAGAATTCAC-AAAGGAATGGAAATGGAAGT
* * *
59984 TCCAAGAATAAAAAGAAGATAAAGTATTAAAAGTAACGGTTGGAGAAGAGCTTTGGAGAATTTAA
388 TCCAAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTGGAGCATTTAA
* * *
60049 GGGCATTAAAAAGAGTATCTGTTGGTGGAGTTAAGCATTTAACAACGTTTTTATGGATTGAAAAT
453 GGGCATTAAAAAGAGTAT-TGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAAT
*
60114 TTTTAAATTAAAAAAAAC-AAATATTTAAAATTATAAAAGAATGAAACATGTTTATTTATTTATT
517 TTTTAAATTAAAAAAAACAAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATT
*
60178 AAAATTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATGTA
582 AAAATTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATA
* * * ** *
60243 GACGAATATATAATTAGGGCTGTAAATGAATTGAGCCTGAATGAATAAACTATGTAGTTAGGTTT
647 GACGAGTATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAACTATGTAGTTGGGTTT
* * *
60308 GTAATCTACAACTGTTGTTAGATTGATTCCCATACATT-GTTTTTTCATTCTCCGAAGATAATTC
712 GTAATCTGCAACTGTTGTCAGATTGATTCCCATACATTAG-TTTTTCATTCTCCGAAGAGAATTC
* * *
60372 ATAAAGGAATGAAAATGGAAGTTACAAGAATAAAAAAGAGATAAA
776 ATAAAGGAATGGAAATGAAAGTTCCAAGAATAAAAAAGAGATAAA
* * *
60417 GTATTAAAAGTAACTGTTGGAGAGGAACCTTGTAGCATTTAAGGGCATTAAAAAGAGTATT-GTT
1 GTATTAAAAGTAACTGTAGGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
*
60481 GGTGGAGTTGAGCATTTAACAATATTTATATGGATTGAAAATTTTTAAATTAAAAAAAATAAAAT
66 GGTGGAGTTGAGCATTTAACAA-ATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAAT
* * *
60546 ATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTAAAATTTTTAATTTGTGAAATAA
130 ATTTAAAATTATAAAAGAAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGTGAAGTAA
* * * ** *
60611 TTTAATTAAAATTAAATTAAATTTAAATAGATATTAAATATATACAAGTGTATAATTAAGGCTGA
195 TTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATT-AGAATTA
* * * * * *
60676 -AAATGAATTGAACTTGAATGAATAGAA-CATTCAATTGAGTTTGTACTCTGCAATTCTTGTCAG
259 TAAATGAATTGAGCTTGAACGAACA-AACCATTCAATTGAGTTTGTAATCTGCAACTGTTGTCAG
* **
60739 ATTGATTCCCATACATTGCTTTTTCATTCTCCGAAGAGAATTCTGAAAGGAATGGAAATGGAAGT
323 ATTGATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATGGAAGT
* *
60804 TCCAAGAATAAAAAGGAGAAAAAGTATTAAAAGTAACTGTTGGAGAGGAGCTTTGGAGCATTTAA
388 TCCAAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTGGAGCATTTAA
* *
60869 GGGCATTAAAAAGAGTATTCGTTGGTGCAGTTGAGCATTTAACATA-ATTTATATGTATTGAAAA
453 GGGCATTAAAAAGAGTATT-GTTGGTGGAGTTGAGCATTTAACA-ACATTTATATGGATTGAAAA
* * *
60933 TTTTTAAATT-AAAAAAACTAAAATATTTAAAATTATAAAAGAAAAAAAAATATTT-TTTCATTT
516 TTTTTAAATTAAAAAAAAC-AAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTT-ATTT
* ** *
60996 ATTAAAATTTTTAATTTGTGAAGTAGTTTAATTAAAATTAAATTAAATAGGAATATATATTAAAT
579 ATTAAAATTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAAT
* * *
61061 ATAGACGAGTGA-AAAATTAGGGTTGTAAATGAATTGAACTTGAATAAATAAA
644 ATAGACGAGT-ATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAA
61113 TCTCTGTTCG
Statistics
Matches: 2769, Mismatches: 310, Indels: 134
0.86 0.10 0.04
Matches are distributed among these distances:
799 2 0.00
800 44 0.02
801 366 0.13
802 115 0.04
803 153 0.06
804 36 0.01
806 1 0.00
808 4 0.00
809 2 0.00
811 2 0.00
812 4 0.00
814 2 0.00
816 27 0.01
817 87 0.03
818 60 0.02
819 33 0.01
820 225 0.08
821 460 0.17
822 433 0.16
823 253 0.09
824 4 0.00
825 2 0.00
826 134 0.05
827 186 0.07
828 8 0.00
829 1 0.00
830 1 0.00
831 124 0.04
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (820 bp):
GTATTAAAAGTAACTGTAGGAGAGGAGCCTTGGAGCATTTAAGGGCATTAAAAAGAGTATTCGTT
GGTGGAGTTGAGCATTTAACAAATTTATATGGATTGAAAATTTTTAAATTAAAAAAACTAAAATA
TTTAAAATTATAAAAGAAAAAAACATGTTTATTCATTTATTAAAATTTTTAATTTGTGAAGTAAT
TTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACGAGTGTATAATTAGAATTATA
AATGAATTGAGCTTGAACGAACAAACCATTCAATTGAGTTTGTAATCTGCAACTGTTGTCAGATT
GATTCCCATACATTGTTTTTTCATTCTCCGAAGAGAATTCACAAAGGAATGGAAATGGAAGTTCC
AAGAATAAAAAGGAGATAAAGTATTAAAAGTAACGGTTGGAGAGGAGCTTTGGAGCATTTAAGGG
CATTAAAAAGAGTATTGTTGGTGGAGTTGAGCATTTAACAACATTTATATGGATTGAAAATTTTT
AAATTAAAAAAAACAAAATATTTAAAATTATAAAAGAAAGAAACATGTTTATTTATTTATTAAAA
TTTTTAATTTGTGAAGTAATTTAATTAAAATTAAATTAAATTTGAATAGATATTAAATATAGACG
AGTATATAATTAGGGTTGTAAATGAATTGAGCTTGAACAAATAAACTATGTAGTTGGGTTTGTAA
TCTGCAACTGTTGTCAGATTGATTCCCATACATTAGTTTTTCATTCTCCGAAGAGAATTCATAAA
GGAATGGAAATGAAAGTTCCAAGAATAAAAAAGAGATAAA
Found at i:61212 original size:28 final size:30
Alignment explanation
Indices: 61176--61239 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
61166 TTCGTTAAGG
* *
61176 ATTTCAAATT-TTT-TGTTAATGTTCGTTT
1 ATTTAAAATTATTTGTGTTAATATTCGTTT
*
61204 ATTTAAAATTATTTGTGTTCATATTCGTTT
1 ATTTAAAATTATTTGTGTTAATATTCGTTT
61234 ATTTAA
1 ATTTAA
61240 TGTTCACTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 9 0.29
29 3 0.10
30 19 0.61
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (30 bp):
ATTTAAAATTATTTGTGTTAATATTCGTTT
Found at i:61418 original size:11 final size:12
Alignment explanation
Indices: 61397--61429 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
61387 ATCATTAAGA
61397 AATAAACGAGTC
1 AATAAACGAGTC
*
61409 -ATAAATGAGTC
1 AATAAACGAGTC
61420 AATAAACGAG
1 AATAAACGAG
61430 CTTATAAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (12 bp):
AATAAACGAGTC
Found at i:61436 original size:12 final size:12
Alignment explanation
Indices: 61421--61456 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
61411 AAATGAGTCA
61421 ATAAACGAGCTT
1 ATAAACGAGCTT
*
61433 ATAAACGATCTT
1 ATAAACGAGCTT
*
61445 TTAAACGAGCTT
1 ATAAACGAGCTT
61457 GTTCGTATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:61817 original size:16 final size:17
Alignment explanation
Indices: 61772--61817 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
61762 TGGTTTCCTT
61772 ATTTCTATTATTTTGTAA
1 ATTT-TATTATTTTGTAA
*
61790 TTTTTATT-TTTT-TAA
1 ATTTTATTATTTTGTAA
*
61805 ATTTTCTTATTTT
1 ATTTTATTATTTT
61818 CCTTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 4 0.17
18 3 0.12
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (17 bp):
ATTTTATTATTTTGTAA
Found at i:62683 original size:96 final size:96
Alignment explanation
Indices: 62504--62690 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
62494 ACGAAAAGGA
* ** * *
62504 TATTTGATTATATAGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCACAATATTTCGGAATC
1 TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCGAAACC
*
62569 GAAGATAAGGAAACATTGCCTCGATTAAGAG
66 GAAGATAAAGAAACATTGCCTCGATTAAGAG
* * * *
62600 TATTCGATTATTTCGATTTGAAGAAAAATTGCACCTAGTGAGTTAAGGCGCAA-ATTTTCGAAAC
1 TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTCGAAA-
*
62664 CCGAA-ATAAA-AGAATATTGCCTCGATT
64 CCGAAGATAAAGA-AACATTGCCTCGATT
62691 TTAAAGTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
95 2 0.03
96 71 0.92
97 4 0.05
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (96 bp):
TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCGAAACC
GAAGATAAAGAAACATTGCCTCGATTAAGAG
Found at i:63127 original size:89 final size:88
Alignment explanation
Indices: 63022--63369 Score: 351
Period size: 89 Copynumber: 3.9 Consensus size: 88
63012 TTCAGGGTAA
* * *
63022 AAAATGGGATTTTTGGAAGTTTGAGGGGGT-AAAATGGTAATTTTTGGAAGGTTCG-GGGTTAAA
1 AAAATGGAATTTTTGGAAGGTT--CGGGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGG-TAAA
* *
63085 ATGG-GACTTTTGGAAGTTTGGGGGT-
63 ATGGTAATTTTTGGAAGTTT-GGGGTC
* *
63110 AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAAAATGG-GACTTTTGGAA-GTTCGAGGGTAAAA
1 AAAATGG-AATTTTTGGAAGGTTCGGGGT-AAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAA
*
63173 TGGTAATTTTTGGAAGGTTCGGGGTC
64 TGGTAATTTTTGGAA-GTTTGGGGTC
* * * * *
63199 AAAAGTGGAACTTTTGGAAGGTTCGGTGTCAAAAAT-GTAATTTTT-TAAAGTTCGAGAGTAAAA
1 AAAA-TGGAATTTTTGGAAGGTTCGGGGT-AAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAA
63262 TGGTAATTTTTGGAAGGTTTGGGGTC
64 TGGTAATTTTTGGAA-GTTTGGGGTC
*
63288 AAAAATGGAATTTTTGGAA-GTTCGAGGGT-AAAATGGTAATTTTTAGAAGGTTCG-GGGTCAAA
1 -AAAATGGAATTTTTGGAAGGTTCG-GGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGGT--AA
*
63350 AATGG-AATTTTTAGAAGTTT
62 AATGGTAATTTTTGGAAGTTT
63370 AGGGACCTCC
Statistics
Matches: 222, Mismatches: 22, Indels: 32
0.80 0.08 0.12
Matches are distributed among these distances:
87 23 0.10
88 57 0.26
89 128 0.58
90 14 0.06
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.34
Consensus pattern (88 bp):
AAAATGGAATTTTTGGAAGGTTCGGGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAATG
GTAATTTTTGGAAGTTTGGGGTC
Found at i:63193 original size:30 final size:29
Alignment explanation
Indices: 62986--63366 Score: 341
Period size: 30 Copynumber: 12.9 Consensus size: 29
62976 CAAACATTCG
* * *
62986 GGGGTAAAAGGGTATTTTTTAGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* * * *
63015 AGGGTAAAAAATGG-GATTTTTGGAAGTTTGAG
1 GGGGT--AAAATGGTAATTTTTGGAAGGTT--C
63047 GGGGTAAAATGGTAATTTTTGGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* * * *
63076 GGGGTTAAAATGG-GACTTTTGGAAGTTTG
1 GGGG-TAAAATGGTAATTTTTGGAAGGTTC
63105 GGGGTAAAATGGTAATTTTTGGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* *
63134 GGGGTAAAAAATGG-GACTTTTGGAA-GTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
63163 GAGGGTAAAATGGTAATTTTTGGAAGGTTC
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
*
63193 GGGGTCAAAAGTGG-AACTTTTGGAAGGTTC
1 GGGGT-AAAA-TGGTAATTTTTGGAAGGTTC
* * *
63223 GGTGTCAAAAAT-GTAATTTTT-TAAAGTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
* *
63252 GAGAGTAAAATGGTAATTTTTGGAAGGTTT
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
63282 GGGGTCAAAAATGG-AATTTTTGGAA-GTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
*
63311 GAGGGTAAAATGGTAATTTTTAGAAGGTTC
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
*
63341 GGGGTCAAAAATGG-AATTTTTAGAAG
1 GGGGT--AAAATGGTAATTTTTGGAAG
63367 TTTAGGGACC
Statistics
Matches: 290, Mismatches: 36, Indels: 51
0.77 0.10 0.14
Matches are distributed among these distances:
28 27 0.09
29 97 0.33
30 115 0.40
31 47 0.16
32 4 0.01
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.33
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAGGTTC
Found at i:63368 original size:59 final size:59
Alignment explanation
Indices: 62991--63366 Score: 353
Period size: 59 Copynumber: 6.3 Consensus size: 59
62981 ATTCGGGGGT
* * * * * * * *
62991 AAAAGGGTATTTTTTAGAAGGTTCAGGGTAAAAAATGGGATTTTTGGAAGTTTGAGGGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT--AAAATGGAACTTTTGGAAGGTT--CGGGGTCA
* * *
63052 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAATGGGACTTTTGGAAGTTTGGGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGG-TAAAATGGAACTTTTGGAAGGTTCGGGGTCA
*
63110 AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAAAATGGGACTTTTGGAA-GTTCGAGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT--AAAATGGAACTTTTGGAAGGTTCG-GGGTCA
*
63169 AAAATGGTAATTTTTGGAAGGTTCGGGGTCAAAAGTGGAACTTTTGGAAGGTTCGGTGTCA
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT-AAAA-TGGAACTTTTGGAAGGTTCGGGGTCA
* * * * *
63230 AAAAT-GTAATTTTT-TAAAGTTCGAGAGTAAAATGGTAATTTTTGGAAGGTTTGGGGTCA
1 AAAATGGTAATTTTTGGAAGGTTCG-GGGTAAAATGG-AACTTTTGGAAGGTTCGGGGTCA
* *
63289 AAAATGG-AATTTTTGGAA-GTTCGAGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCA
1 AAAATGGTAATTTTTGGAAGGTTCG-GGGTAAAATGG-AACTTTTGGAAGGTTCGGGGTCA
*
63348 AAAATGG-AATTTTTAGAAG
1 AAAATGGTAATTTTTGGAAG
63367 TTTAGGGACC
Statistics
Matches: 281, Mismatches: 21, Indels: 27
0.85 0.06 0.08
Matches are distributed among these distances:
57 1 0.00
58 44 0.16
59 165 0.59
60 41 0.15
61 29 0.10
62 1 0.00
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAATGGAACTTTTGGAAGGTTCGGGGTCA
Found at i:65218 original size:18 final size:17
Alignment explanation
Indices: 65197--65272 Score: 80
Period size: 17 Copynumber: 4.4 Consensus size: 17
65187 TTATAATAGT
65197 TTTAAATTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
65215 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
* *
65232 TTCAAATTCAAAATAAA
1 TTTAAATTTAAAATAAA
* *
65249 TTTAAAATTTTAAACAAA
1 TTT-AAATTTAAAATAAA
65267 TTTAAA
1 TTTAAA
65273 GGGAGTTTGG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
17 25 0.53
18 22 0.47
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.38
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:65255 original size:11 final size:11
Alignment explanation
Indices: 65199--65256 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
65189 ATAATAGTTT
65199 TAAATTTGAAAA
1 TAAATTT-AAAA
*
65211 TAAATTTAAACT
1 TAAATTTAAA-A
*
65223 TAAA-TTAAAT
1 TAAATTTAAAA
*
65233 TCAAATTCAAAA
1 T-AAATTTAAAA
65245 TAAATTTAAAA
1 TAAATTTAAAA
65256 T
1 T
65257 TTTAAACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 2 0.05
11 21 0.54
12 16 0.41
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:66074 original size:207 final size:201
Alignment explanation
Indices: 65583--66106 Score: 617
Period size: 201 Copynumber: 2.6 Consensus size: 201
65573 TTGACTTGGC
* * * * *
65583 CTTCTTCTCAGTATCTCATCAGGAAAATGACCGCGTCGTTTGTTTCAATCCGCTCCTCTGTATCT
1 CTTCTTCTCAATATCTTATCAGGAAGATGACCGCGTCGTTTGTTTCAATCTGCTTCTCTGTATCT
*
65648 CATCAAGAAGACGAATTTGGTTCACTTCTCAGTATCTCATTTGGAAGCTAACCATTTATTGCTTC
66 CATCAAGAAGACGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTATTGCTTC
* * ** * *
65713 CCCCTGCTTCTCAGTGTCTCATCGGGAAGCTGGGTTTTGAAGATTTCGCTCGTTTCGAGCCTAGT
131 CACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTCGCTCGTTTCGAGCCTAGT
65778 TTGGAT
196 TTGGAT
* *
65784 C-TCATTCTCAATGTCTTATCAGGAAGATGACCGCATCGTTTGTTTCAA-CTCGCTTCTCTGTAT
1 CTTC-TTCTCAATATCTTATCAGGAAGATGACCGCGTCGTTTGTTTCAATCT-GCTTCTCTGTAT
* * * *
65847 CTCATCAGGAAGGCGAATTTGGTTCACTTCTCAATATCTCATTAGGAAGCTAACCTTTTATTGCT
64 CTCATCAAGAAGACGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTATTGCT
* * * * * *
65912 TCGACCTGCTTTTCAGTATCTTC-TCAAGAAGCTAGGGGTTCGAAGATTTTGTTTGCTTT-GGGC
129 TCCACCTGCTTCTCAGTATC-TCATCAAGAAGCT-GGGGTTCGAAGATTTCGCTCG-TTTCGAGC
* * *
65975 GTGGGTTCGATTTGAT
191 CT-AG-T---TTGGAT
* *
65991 CTTCTTCTCAATATCTTATTAGGAAGATGATCGCGTCGTTTGTTTCAATCTGCTTCTCTGTATCT
1 CTTCTTCTCAATATCTTATCAGGAAGATGACCGCGTCGTTTGTTTCAATCTGCTTCTCTGTATCT
* * * *
66056 CATCATGAAGACGAATTTGG-TCTACTTCTCCGTATCTCATCAGGAGGCTAA
66 CATCAAGAAGACGAATTTGGTTC-ACTTCTCAGTATCTCATTAGGAAGCTAA
66107 TTATTTCGAC
Statistics
Matches: 273, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
200 3 0.01
201 135 0.49
202 22 0.08
203 4 0.01
204 1 0.00
206 2 0.01
207 102 0.37
208 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (201 bp):
CTTCTTCTCAATATCTTATCAGGAAGATGACCGCGTCGTTTGTTTCAATCTGCTTCTCTGTATCT
CATCAAGAAGACGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTATTGCTTC
CACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTCGCTCGTTTCGAGCCTAGT
TTGGAT
Found at i:66420 original size:28 final size:30
Alignment explanation
Indices: 66384--66447 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
66374 TTCGTTAAGG
* *
66384 ATTTCAAATT-TTT-TGTTAATGTTCGTTT
1 ATTTAAAATTATTTGTGTTAATATTCGTTT
*
66412 ATTTAAAATTATTTGTGTTCATATTCGTTT
1 ATTTAAAATTATTTGTGTTAATATTCGTTT
66442 ATTTAA
1 ATTTAA
66448 TGTTCACTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 9 0.29
29 3 0.10
30 19 0.61
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (30 bp):
ATTTAAAATTATTTGTGTTAATATTCGTTT
Found at i:66626 original size:11 final size:12
Alignment explanation
Indices: 66605--66637 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
66595 ATCATTAAGA
66605 AATAAACGAGTC
1 AATAAACGAGTC
*
66617 -ATAAATGAGTC
1 AATAAACGAGTC
66628 AATAAACGAG
1 AATAAACGAG
66638 CTTATAAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (12 bp):
AATAAACGAGTC
Found at i:66644 original size:12 final size:12
Alignment explanation
Indices: 66629--66664 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
66619 AAATGAGTCA
66629 ATAAACGAGCTT
1 ATAAACGAGCTT
*
66641 ATAAACGATCTT
1 ATAAACGAGCTT
*
66653 TTAAACGAGCTT
1 ATAAACGAGCTT
66665 GTTCGTATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:67025 original size:16 final size:17
Alignment explanation
Indices: 66980--67025 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
66970 TGGTTTCCTT
66980 ATTTCTATTATTTTGTAA
1 ATTT-TATTATTTTGTAA
*
66998 TTTTTATT-TTTT-TAA
1 ATTTTATTATTTTGTAA
*
67013 ATTTTCTTATTTT
1 ATTTTATTATTTT
67026 CCTTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 4 0.17
18 3 0.12
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (17 bp):
ATTTTATTATTTTGTAA
Found at i:67891 original size:96 final size:96
Alignment explanation
Indices: 67712--67898 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
67702 ACGAAAAGGA
* ** * *
67712 TATTTGATTATATAGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCACAATATTTCGGAATC
1 TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCGAAACC
*
67777 GAAGATAAGGAAACATTGCCTCGATTAAGAG
66 GAAGATAAAGAAACATTGCCTCGATTAAGAG
* * * *
67808 TATTCGATTATTTCGATTTGAAGAAAAATTGCACCTAGTGAGTTAAGGCGCAA-ATTTTCGAAAC
1 TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTCGAAA-
*
67872 CCGAA-ATAAA-AGAATATTGCCTCGATT
64 CCGAAGATAAAGA-AACATTGCCTCGATT
67899 TTAAAGTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
95 2 0.03
96 71 0.92
97 4 0.05
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (96 bp):
TATTCGATTATATAGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCGAAACC
GAAGATAAAGAAACATTGCCTCGATTAAGAG
Found at i:68335 original size:89 final size:88
Alignment explanation
Indices: 68230--68577 Score: 351
Period size: 89 Copynumber: 3.9 Consensus size: 88
68220 TTCAGGGTAA
* * *
68230 AAAATGGGATTTTTGGAAGTTTGAGGGGGT-AAAATGGTAATTTTTGGAAGGTTCG-GGGTTAAA
1 AAAATGGAATTTTTGGAAGGTT--CGGGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGG-TAAA
* *
68293 ATGG-GACTTTTGGAAGTTTGGGGGT-
63 ATGGTAATTTTTGGAAGTTT-GGGGTC
* *
68318 AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAAAATGG-GACTTTTGGAA-GTTCGAGGGTAAAA
1 AAAATGG-AATTTTTGGAAGGTTCGGGGT-AAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAA
*
68381 TGGTAATTTTTGGAAGGTTCGGGGTC
64 TGGTAATTTTTGGAA-GTTTGGGGTC
* * * * *
68407 AAAAGTGGAACTTTTGGAAGGTTCGGTGTCAAAAAT-GTAATTTTT-TAAAGTTCGAGAGTAAAA
1 AAAA-TGGAATTTTTGGAAGGTTCGGGGT-AAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAA
68470 TGGTAATTTTTGGAAGGTTTGGGGTC
64 TGGTAATTTTTGGAA-GTTTGGGGTC
*
68496 AAAAATGGAATTTTTGGAA-GTTCGAGGGT-AAAATGGTAATTTTTAGAAGGTTCG-GGGTCAAA
1 -AAAATGGAATTTTTGGAAGGTTCG-GGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGGT--AA
*
68558 AATGG-AATTTTTAGAAGTTT
62 AATGGTAATTTTTGGAAGTTT
68578 AGGGACCTCC
Statistics
Matches: 222, Mismatches: 22, Indels: 32
0.80 0.08 0.12
Matches are distributed among these distances:
87 23 0.10
88 57 0.26
89 128 0.58
90 14 0.06
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.34
Consensus pattern (88 bp):
AAAATGGAATTTTTGGAAGGTTCGGGGTAAAAATGGTAATTTTTGGAAGGTTCGAGGGTAAAATG
GTAATTTTTGGAAGTTTGGGGTC
Found at i:68401 original size:30 final size:29
Alignment explanation
Indices: 68194--68574 Score: 341
Period size: 30 Copynumber: 12.9 Consensus size: 29
68184 CAAACATTCG
* * *
68194 GGGGTAAAAGGGTATTTTTTAGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* * * *
68223 AGGGTAAAAAATGG-GATTTTTGGAAGTTTGAG
1 GGGGT--AAAATGGTAATTTTTGGAAGGTT--C
68255 GGGGTAAAATGGTAATTTTTGGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* * * *
68284 GGGGTTAAAATGG-GACTTTTGGAAGTTTG
1 GGGG-TAAAATGGTAATTTTTGGAAGGTTC
68313 GGGGTAAAATGGTAATTTTTGGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC
* *
68342 GGGGTAAAAAATGG-GACTTTTGGAA-GTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
68371 GAGGGTAAAATGGTAATTTTTGGAAGGTTC
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
*
68401 GGGGTCAAAAGTGG-AACTTTTGGAAGGTTC
1 GGGGT-AAAA-TGGTAATTTTTGGAAGGTTC
* * *
68431 GGTGTCAAAAAT-GTAATTTTT-TAAAGTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
* *
68460 GAGAGTAAAATGGTAATTTTTGGAAGGTTT
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
68490 GGGGTCAAAAATGG-AATTTTTGGAA-GTTC
1 GGGGT--AAAATGGTAATTTTTGGAAGGTTC
*
68519 GAGGGTAAAATGGTAATTTTTAGAAGGTTC
1 G-GGGTAAAATGGTAATTTTTGGAAGGTTC
*
68549 GGGGTCAAAAATGG-AATTTTTAGAAG
1 GGGGT--AAAATGGTAATTTTTGGAAG
68575 TTTAGGGACC
Statistics
Matches: 290, Mismatches: 36, Indels: 51
0.77 0.10 0.14
Matches are distributed among these distances:
28 27 0.09
29 97 0.33
30 115 0.40
31 47 0.16
32 4 0.01
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.33
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAGGTTC
Found at i:68576 original size:59 final size:59
Alignment explanation
Indices: 68199--68574 Score: 353
Period size: 59 Copynumber: 6.3 Consensus size: 59
68189 ATTCGGGGGT
* * * * * * * *
68199 AAAAGGGTATTTTTTAGAAGGTTCAGGGTAAAAAATGGGATTTTTGGAAGTTTGAGGGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT--AAAATGGAACTTTTGGAAGGTT--CGGGGTCA
* * *
68260 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAATGGGACTTTTGGAAGTTTGGGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGG-TAAAATGGAACTTTTGGAAGGTTCGGGGTCA
*
68318 AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAAAATGGGACTTTTGGAA-GTTCGAGGGT--
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT--AAAATGGAACTTTTGGAAGGTTCG-GGGTCA
*
68377 AAAATGGTAATTTTTGGAAGGTTCGGGGTCAAAAGTGGAACTTTTGGAAGGTTCGGTGTCA
1 AAAATGGTAATTTTTGGAAGGTTCGGGGT-AAAA-TGGAACTTTTGGAAGGTTCGGGGTCA
* * * * *
68438 AAAAT-GTAATTTTT-TAAAGTTCGAGAGTAAAATGGTAATTTTTGGAAGGTTTGGGGTCA
1 AAAATGGTAATTTTTGGAAGGTTCG-GGGTAAAATGG-AACTTTTGGAAGGTTCGGGGTCA
* *
68497 AAAATGG-AATTTTTGGAA-GTTCGAGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCA
1 AAAATGGTAATTTTTGGAAGGTTCG-GGGTAAAATGG-AACTTTTGGAAGGTTCGGGGTCA
*
68556 AAAATGG-AATTTTTAGAAG
1 AAAATGGTAATTTTTGGAAG
68575 TTTAGGGACC
Statistics
Matches: 281, Mismatches: 21, Indels: 27
0.85 0.06 0.08
Matches are distributed among these distances:
57 1 0.00
58 44 0.16
59 165 0.59
60 41 0.15
61 29 0.10
62 1 0.00
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGAAGGTTCGGGGTAAAATGGAACTTTTGGAAGGTTCGGGGTCA
Found at i:70426 original size:18 final size:17
Alignment explanation
Indices: 70405--70480 Score: 80
Period size: 17 Copynumber: 4.4 Consensus size: 17
70395 TTATAATAGT
70405 TTTAAATTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
70423 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
* *
70440 TTCAAATTCAAAATAAA
1 TTTAAATTTAAAATAAA
* *
70457 TTTAAAATTTTAAACAAA
1 TTT-AAATTTAAAATAAA
70475 TTTAAA
1 TTTAAA
70481 GGGAGTTTGG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
17 25 0.53
18 22 0.47
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.38
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:70463 original size:11 final size:11
Alignment explanation
Indices: 70407--70464 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
70397 ATAATAGTTT
70407 TAAATTTGAAAA
1 TAAATTT-AAAA
*
70419 TAAATTTAAACT
1 TAAATTTAAA-A
*
70431 TAAA-TTAAAT
1 TAAATTTAAAA
*
70441 TCAAATTCAAAA
1 T-AAATTTAAAA
70453 TAAATTTAAAA
1 TAAATTTAAAA
70464 T
1 T
70465 TTTAAACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 2 0.05
11 21 0.54
12 16 0.41
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:71455 original size:198 final size:198
Alignment explanation
Indices: 70786--71739 Score: 1022
Period size: 198 Copynumber: 4.8 Consensus size: 198
70776 TTTCCTTGAC
* * *
70786 TTGGCCTTCTTCTCAGTATCTCATCAGGAAAATGACCGCGTCGTTTGTTTCAATCCGCTCCTCTG
1 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTG
* ** *
70851 TATCTCATCAAGAAGACGAATTTGGT-TCACTTCTCAGTATCTCATTTGGAAGCTAACCATTTAT
66 TATCTCATCAAGAAGACGAATTTGGTCT-ACTTCTCCGTATCTCATCAGGAGGCT-A--A-TTA-
* * * * * * *
70915 TGCTTC-CCCCTGCTTCTCAGTGTCTCATC-GGGAAGCTG-GGTTTTGAAGATTTCGCTCGTTTC
125 T--TTCGACAC-GCTTCTCAGTATCTCATCAAGG-AGCTGTGG-TTCGAAGATTT-GCTCATGTC
*
70977 GAGCCT-AGTTT-G-
184 GAGCATGAGTTTGGT
* * * * *
70989 --GATC-TCATTCTCAATGTCTTATCAGGAAGATGACCGCATCGTTTGTTTCAA-CTCGCTTCTC
1 TTGGTCTTC-TTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATC-CGCTTCTC
* * ** * *
71050 TGTATCTCATCAGGAAGGCGAATTTGGT-TCACTTCTCAATATCTCATTAGGAAGCTAACCTTTT
64 TGTATCTCATCAAGAAGACGAATTTGGTCT-ACTTCTCCGTATCTCATCAGGAGGCTAA----TT
* * * *
71114 ATTGCTTCGAC-CTGCTTTTCAGTATCTTC-TCAAGAAGCTAGGGGTTCGAAGATTTTG-T-TTG
124 A-T--TTCGACAC-GCTTCTCAGTATC-TCATCAAGGAGCT-GTGGTTCGAAGA-TTTGCTCATG
* * * * * *
71175 CTTTGGGCGTGGGTTCGAT
182 --TCGAGCATGAGTTTGGT
* * * * * *
71194 TTGATCTTCTTCTCAATATCTTATTAGGAAGATGATCGCGTCGTTTGTTTCAATCTGCTTCTCTG
1 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTG
*
71259 TATCTCATCATGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
66 TATCTCATCAAGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
* * *
71324 CACGCTTTTCAGTATCTCATCAAGGAGCTGTGGTTCGAAGATTTTCTCATGTCAAGCATGAGTTT
131 CACGCTTCTCAGTATCTCATCAAGGAGCTGTGGTTCGAAGATTTGCTCATGTCGAGCATGAGTTT
71389 GGT
196 GGT
*
71392 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTG
1 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTG
* * *
71457 TATCTCATTAAGAAGACGAATTTGGTCTACTTTTCCGTATCTCATCAAGAGGCTAATTATTTCGA
66 TATCTCATCAAGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
* *
71522 CACGCTTCTCAGTATCTCATCAGGGAGCTGTGGTTCGAAGATTTGCTCATGTCGAGCATGGGTTT
131 CACGCTTCTCAGTATCTCATCAAGGAGCTGTGGTTCGAAGATTTGCTCATGTCGAGCATGAGTTT
71587 GGT
196 GGT
* * **
71590 TTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGATCGCGTCGTTTGTTTCAATCTACTTCTCTG
1 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTG
* *
71655 TATCTTATCAGGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
66 TATCTCATCAAGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
71720 CACGCTTCTCAGTATCTCAT
131 CACGCTTCTCAGTATCTCAT
71740 TAGGGNNNNN
Statistics
Matches: 652, Mismatches: 74, Indels: 55
0.83 0.09 0.07
Matches are distributed among these distances:
198 336 0.52
199 14 0.02
200 35 0.05
201 132 0.20
202 19 0.03
203 11 0.02
207 101 0.15
208 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (198 bp):
TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTG
TATCTCATCAAGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGGAGGCTAATTATTTCGA
CACGCTTCTCAGTATCTCATCAAGGAGCTGTGGTTCGAAGATTTGCTCATGTCGAGCATGAGTTT
GGT
Found at i:73347 original size:205 final size:198
Alignment explanation
Indices: 72832--73363 Score: 656
Period size: 198 Copynumber: 2.6 Consensus size: 198
72822 AAATTTATTG
*
72832 TAATTATTTCGACACGCTTCTCAGTATCTCATCAGGTAGCTGTGGTTCGAAGATTTGCTCATGTC
1 TAATTATTTCGACACGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAGATTTGCTCATGTC
* * * ** *
72897 GAGCACGGGTTTGGTTTGATCTTCTTCTTAGTATCTCATCAATAAGATGA-TCGCGTCGTTTGTT
66 GAGCATGGGTTTGGTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACT-GCGTCTTTTGTT
* * * * *
72961 TCAATCTACTTCTCTGTGTCTCATCAGGAAGACGAATTTGGTCTACTTCTCCGTATCTCATCAGG
130 TCAATCCACTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCTACTTATCCGTATCTAATCAGG
***
73026 AGGC
195 AAAA
* *
73030 TAATTATTTCGACACGCTTCTCAGTATCTCATTAGGGAGCTGTGGTTCGAAGATTTGCTCATGTC
1 TAATTATTTCGACACGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAGATTTGCTCATGTC
* * *
73095 GAACATAGGTTTGGTTTGGTCTTCTTCTCAGTATCTCATCTGGAAGATGACTGCGTCTTTTGTTT
66 GAGCATGGGTTTGGTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCGTCTTTTGTTT
* *
73160 CAATCCGCTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCTACTTATCTGTATCTAATCAGGA
131 CAATCCACTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCTACTTATCCGTATCTAATCAGGA
73225 AAA
196 AAA
* * * * *
73228 TAACCGTTTATTACTCCGATC-TGCTTCTCGGTGTGTCATCAGGAAGCTG-GGATTCGAAGACTT
1 TAA----TTATT--T-CGA-CACGCTTCTCAGTATCTCATCAGGAAGCTGTGG-TTCGAAGATTT
* * * * *
73291 GCTCATATCGTGCGTGGGTTTGGTTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGCGT
57 GCTCATGTCGAGCATGGGTTTGGTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCGT
73356 CATTTTGT
122 C-TTTTGT
73364 GGATAATCGT
Statistics
Matches: 287, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
198 178 0.62
199 1 0.00
202 5 0.02
204 3 0.01
205 93 0.32
206 7 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (198 bp):
TAATTATTTCGACACGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAGATTTGCTCATGTC
GAGCATGGGTTTGGTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCGTCTTTTGTTT
CAATCCACTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCTACTTATCCGTATCTAATCAGGA
AAA
Found at i:84912 original size:96 final size:96
Alignment explanation
Indices: 84728--84919 Score: 228
Period size: 96 Copynumber: 2.0 Consensus size: 96
84718 CTTTTGCGAA
** * *
84728 AAGGATATTTGATTATCTCGATTTGAAGAAAGGTTGCATCTAGTAAGTTAAGGTGCAATATTTCG
1 AAGGATATTTGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCGCAATATTTCG
* * *
84793 GAATCGAAGATAAGGAAACATTGCCTCGATT
66 AAACCGAAGATAAAGAAACATTGCCTCGATT
* * * *
84824 AAGGGTATTTGATTATTTCGATTTGAAGAAAAATTGCACCTAGTGAGTTAATGCGCAA-ATTTTC
1 AAGGATATTTGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCGCAATA-TTTC
*
84888 GAAACCCGAA-ATAAA-AGAATATTGCCTCGATT
65 GAAA-CCGAAGATAAAGA-AACATTGCCTCGATT
84920 TTAAAGTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
95 2 0.02
96 75 0.93
97 4 0.05
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (96 bp):
AAGGATATTTGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCGCAATATTTCG
AAACCGAAGATAAAGAAACATTGCCTCGATT
Found at i:85265 original size:30 final size:29
Alignment explanation
Indices: 85215--85536 Score: 261
Period size: 30 Copynumber: 10.9 Consensus size: 29
85205 CAAACATTCG
85215 AGGGT-AAAATGGTAATTTTTGGAAGGTTC
1 AGGGTAAAAATGG-AATTTTTGGAAGGTTC
*
85244 AGGGTAAAAAATGGGATTTTTGGAA-GTTC
1 AGGGT-AAAAATGGAATTTTTGGAAGGTTC
*
85273 GGGGGGT-AAAATGGTAATTTTTGGAAGGTTC
1 --AGGGTAAAAATGG-AATTTTTGGAAGGTTC
*
85304 AGGGTTAAAAAT-GAGACTTTTGGAA-GTTC
1 AGGG-TAAAAATGGA-ATTTTTGGAAGGTTC
* *
85333 GAGTGT-AAAATGATAATTTTTGGAAGGTTC
1 -AGGGTAAAAATG-GAATTTTTGGAAGGTTC
* * *
85363 GGGGTCAAAAGTGGAACTTTTGGAAGGTTC
1 AGGGT-AAAAATGGAATTTTTGGAAGGTTC
*
85393 GGGGTCAAAAATGGAATTTTTGGAA-GTTC
1 AGGGT-AAAAATGGAATTTTTGGAAGGTTC
*
85422 GAGAGT-AAAATGGTAATTTTTGGAAGGTTC
1 -AGGGTAAAAATGG-AATTTTTGGAAGGTTC
**
85452 -GAGGTCAAAAATAAAATTTTTGGAA-GTTC
1 AG-GGT-AAAAATGGAATTTTTGGAAGGTTC
* * *
85481 GGGGGT-AAAATGGTAATTATTGGATGGTTC
1 -AGGGTAAAAATGG-AATTTTTGGAAGGTTC
*
85511 GAGGTTAAAAATGGAATTTTTGGAAG
1 -AGGGTAAAAATGGAATTTTTGGAAG
85537 TTTAAGGACC
Statistics
Matches: 239, Mismatches: 28, Indels: 51
0.75 0.09 0.16
Matches are distributed among these distances:
28 18 0.08
29 67 0.28
30 116 0.49
31 38 0.16
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (29 bp):
AGGGTAAAAATGGAATTTTTGGAAGGTTC
Found at i:85382 original size:59 final size:59
Alignment explanation
Indices: 85211--85536 Score: 282
Period size: 59 Copynumber: 5.5 Consensus size: 59
85201 ATTTCAAACA
* * * *
85211 TTCGAGGGTAAAATGGTAATTTTTGGAAGGTTCAGGGTAAAAAATGGGATTTTTGGAA-G
1 TTCGAGGGTAAAATGATAATTTTTGGAAGGTTCGGGGT-AAAAATGGAACTTTTGGAAGG
* * *
85270 TTCGGGGGGTAAAATGGTAATTTTTGGAAGGTTCAGGGTTAAAAAT-GAGACTTTTGGAA-G
1 TTC-GAGGGTAAAATGATAATTTTTGGAAGGTTC-GGGGTAAAAATGGA-ACTTTTGGAAGG
* *
85330 TTCGAGTGTAAAATGATAATTTTTGGAAGGTTCGGGGTCAAAAGTGGAACTTTTGGAAGG
1 TTCGAGGGTAAAATGATAATTTTTGGAAGGTTCGGGGT-AAAAATGGAACTTTTGGAAGG
* * *
85390 TTCG-GGGTCAAAAATG-GAATTTTTGGAA-GTTCGAGAGT-AAAATGGTAATTTTTGGAAGG
1 TTCGAGGGT--AAAATGATAATTTTTGGAAGGTTCG-GGGTAAAAATGG-AACTTTTGGAAGG
* *
85449 TTCGA-GGTCAAAAAT-AAAATTTTTGGAA-GTTCGGGGGT-AAAATGGTAA-TTATTGGATGG
1 TTCGAGGGT--AAAATGATAATTTTTGGAAGGTTC-GGGGTAAAAATGG-AACTT-TTGGAAGG
* *
85508 TTCGAGGTTAAAAATG-GAATTTTTGGAAG
1 TTCGAGGGT-AAAATGATAATTTTTGGAAG
85537 TTTAAGGACC
Statistics
Matches: 230, Mismatches: 20, Indels: 33
0.81 0.07 0.12
Matches are distributed among these distances:
58 12 0.05
59 137 0.60
60 72 0.31
61 9 0.04
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (59 bp):
TTCGAGGGTAAAATGATAATTTTTGGAAGGTTCGGGGTAAAAATGGAACTTTTGGAAGG
Found at i:85473 original size:89 final size:87
Alignment explanation
Indices: 85211--85536 Score: 290
Period size: 89 Copynumber: 3.6 Consensus size: 87
85201 ATTTCAAACA
*
85211 TTCGAGGGT-AAAATGGTAATTTTTGGAAGGTTC-AGGGTAAAAAATGG-GATTTTTGGAA-GTT
1 TTCG-GGGTAAAAATGG-AATTTTTGGAA-GTTCGA-GGT--AAAATGGTAATTTTTGGAAGGTT
* *** **
85272 CGGGGGGTAAAATGGTAATTTTTGGAAGG
60 CGAGGTCAAAAAT-AAAATTTTTGGAAGG
* * * *
85301 TTCAGGGTTAAAAAT-GAGACTTTTGGAAGTTCGAGTGTAAAATGATAATTTTTGGAAGGTTCGG
1 TTC-GGGGTAAAAATGGA-ATTTTTGGAAGTTCGAG-GTAAAATGGTAATTTTTGGAAGGTTCGA
* ** *
85365 GGTCAAAAGTGGAACTTTTGGAAGG
63 GGTCAAAAATAAAATTTTTGGAAGG
85390 TTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAGGTTCGAG
1 TTCGGGGT-AAAAATGGAATTTTTGGAAGTTCGAG-GTAAAATGGTAATTTTTGGAAGGTTCGAG
85455 GTCAAAAATAAAATTTTTGGAA-G
64 GTCAAAAATAAAATTTTTGGAAGG
* *
85478 TTCGGGGGT-AAAATGGTAATTATTGGATGGTTCGAGGTTAAAAATGG-AATTTTTGGAAG
1 TTC-GGGGTAAAAATGG-AATTTTTGGA-AGTTCGAGG-T-AAAATGGTAATTTTTGGAAG
85537 TTTAAGGACC
Statistics
Matches: 201, Mismatches: 21, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
87 7 0.03
88 24 0.12
89 124 0.62
90 40 0.20
91 6 0.03
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (87 bp):
TTCGGGGTAAAAATGGAATTTTTGGAAGTTCGAGGTAAAATGGTAATTTTTGGAAGGTTCGAGGT
CAAAAATAAAATTTTTGGAAGG
Found at i:86652 original size:12 final size:13
Alignment explanation
Indices: 86635--86668 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
86625 TTATTAACCA
86635 TTAATAATATT-T
1 TTAATAATATTCT
86647 TTAATAATATTCT
1 TTAATAATATTCT
86660 TTAATAATA
1 TTAATAATA
86669 ATAAAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATAATATTCT
Found at i:87407 original size:17 final size:16
Alignment explanation
Indices: 87381--87436 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
87371 TTTAATTTTG
87381 AAAATAAATTTAAACTT
1 AAAATAAATTTAAA-TT
* *
87398 AAATTAAATTCAAATT
1 AAAATAAATTTAAATT
87414 CAAAATAAATTTAAATTT
1 -AAAATAAATTTAAA-TT
87432 AAAAT
1 AAAAT
87437 TTTAAACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.06
17 29 0.88
18 2 0.06
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATAAATTTAAATT
Found at i:87412 original size:11 final size:11
Alignment explanation
Indices: 87385--87452 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
87375 ATTTTGAAAA
87385 TAAATTTAAACT
1 TAAATTTAAA-T
87397 TAAA-TTAAAT
1 TAAATTTAAAT
* *
87407 TCAAATTCAAAA
1 T-AAATTTAAAT
87419 TAAATTTAAATT
1 TAAATTTAAA-T
87431 TAAAATTTTAAA-
1 T-AAA-TTTAAAT
*
87443 CAAATTTAAA
1 TAAATTTAAA
87453 GGGAGTTTGG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
10 8 0.17
11 19 0.41
12 10 0.22
13 3 0.07
14 6 0.13
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAATTTAAAT
Found at i:87438 original size:7 final size:6
Alignment explanation
Indices: 87385--87434 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
87375 ATTTTGAAAA
* * * *
87385 TAAATT TAAACT TAAA-T TAAATT CAAATT CAAA-A TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
87431 TAAA
1 TAAA
87435 ATTTTAAACA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
5 8 0.22
6 29 0.78
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (6 bp):
TAAATT
Found at i:87860 original size:9 final size:8
Alignment explanation
Indices: 87846--87927 Score: 51
Period size: 9 Copynumber: 9.9 Consensus size: 8
87836 ATAATGTGTT
87846 AAAAAATAC
1 AAAAAAT-C
87855 AAAAAAT-
1 AAAAAATC
*
87862 -AAAAATAA
1 AAAAAAT-C
*
87870 AAAAAATA
1 AAAAAATC
87878 AAAAAATC
1 AAAAAATC
*
87886 ATAAAATC
1 AAAAAATC
*
87894 ATAAAATTCC
1 A-AAAAAT-C
*
87904 AAAAAATT
1 AAAAAATC
*
87912 AGAAAATC
1 AAAAAATC
87920 ATAAAAAT
1 A-AAAAAT
87928 TATAAAAACT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
6 6 0.10
8 23 0.40
9 27 0.47
10 2 0.03
ACGTcount: A:0.73, C:0.07, G:0.01, T:0.18
Consensus pattern (8 bp):
AAAAAATC
Found at i:87867 original size:15 final size:15
Alignment explanation
Indices: 87847--87881 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
87837 TAATGTGTTA
*
87847 AAAAATACAAAAAAT
1 AAAAATAAAAAAAAT
87862 AAAAATAAAAAAAAT
1 AAAAATAAAAAAAAT
87877 AAAAA
1 AAAAA
87882 AATCATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:87899 original size:26 final size:24
Alignment explanation
Indices: 87845--87942 Score: 74
Period size: 26 Copynumber: 3.9 Consensus size: 24
87835 TATAATGTGT
87845 TAAAAAATACAAAAAATAAAAAT-A
1 TAAAAAATA-AAAAAATAAAAATCA
*
87869 AAAAAAATAAAAAAATCATAAAATCA
1 TAAAAAATAAAAAAAT-A-AAAATCA
* *
87895 T-AAAATTCCAAAAAATTAGAAAATCA
1 TAAAAAAT--AAAAAAATA-AAAATCA
* *
87921 TAAAAATTATAAAAACTAAAAA
1 TAAAAAATA-AAAAAATAAAAA
87943 ACTATAATCT
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
23 7 0.11
24 9 0.15
25 15 0.25
26 17 0.28
27 13 0.21
ACGTcount: A:0.72, C:0.07, G:0.01, T:0.19
Consensus pattern (24 bp):
TAAAAAATAAAAAAATAAAAATCA
Found at i:91672 original size:31 final size:29
Alignment explanation
Indices: 91627--91685 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
91617 GTAAAAATCG
91627 ATATAATAATAATTTTAGCTCTTAATTTTAT
1 ATATAATAATAA-TTTAGCTC-TAATTTTAT
* * *
91658 ATATTATATTAATTTAGTTCTAATTTTA
1 ATATAATAATAATTTAGCTCTAATTTTA
91686 AAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.32
30 7 0.28
31 10 0.40
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (29 bp):
ATATAATAATAATTTAGCTCTAATTTTAT
Found at i:91774 original size:19 final size:19
Alignment explanation
Indices: 91731--91790 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
91721 TTTAATCTTA
* *
91731 ATTAAAAA-ATATATATAT
1 ATTAAAAATACATAAATAT
91749 A-TAAAAATACATAAATAT
1 ATTAAAAATACATAAATAT
* *
91767 TTTAAAAATATATAAATAT
1 ATTAAAAATACATAAATAT
91786 ATTAA
1 ATTAA
91791 TATTAAATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 6 0.17
18 9 0.26
19 20 0.57
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAAAATACATAAATAT
Found at i:94607 original size:15 final size:16
Alignment explanation
Indices: 94568--94618 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
94558 TGCTATTTAT
* *
94568 TTTTATTTCGATTTTC
1 TTTTAATTCTATTTTC
94584 TTATT--TTCTA-TTTC
1 TT-TTAATTCTATTTTC
94598 TTTTAATTCTATTTTC
1 TTTTAATTCTATTTTC
94614 TTTTA
1 TTTTA
94619 TTTTTAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
13 2 0.07
14 6 0.20
15 9 0.30
16 11 0.37
17 2 0.07
ACGTcount: A:0.16, C:0.12, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTAATTCTATTTTC
Found at i:94612 original size:22 final size:22
Alignment explanation
Indices: 94585--94644 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
94575 TCGATTTTCT
94585 TATTTTCTATTT-CTTTTAATTC
1 TATTTTCT-TTTACTTTTAATTC
*
94607 TATTTTCTTTTATTTTTAA-T-
1 TATTTTCTTTTACTTTTAATTC
*
94627 TATGTTTCTTTTATTTTT
1 TAT-TTTCTTTTACTTTT
94645 CTTTAGATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.51
22 14 0.40
ACGTcount: A:0.17, C:0.08, G:0.02, T:0.73
Consensus pattern (22 bp):
TATTTTCTTTTACTTTTAATTC
Found at i:94615 original size:16 final size:15
Alignment explanation
Indices: 94553--94620 Score: 61
Period size: 15 Copynumber: 4.5 Consensus size: 15
94543 AACTTATTTA
*
94553 TTTTATGCTATTTAT-
1 TTTTATTCTATTT-TC
*
94568 TTTTATTTCGATTTTC
1 TTTTA-TTCTATTTTC
94584 TTATT-TTCTA-TTTC
1 TT-TTATTCTATTTTC
94598 TTTTAATTCTATTTTC
1 TTTT-ATTCTATTTTC
94614 TTTTATT
1 TTTTATT
94621 TTTAATTATG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.05
14 6 0.14
15 18 0.41
16 16 0.36
17 2 0.05
ACGTcount: A:0.16, C:0.10, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTATTCTATTTTC
Found at i:97650 original size:22 final size:23
Alignment explanation
Indices: 97613--97655 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
97603 AATTGTCAAT
*
97613 TTAATTTTTAGGTTTTGATCTAA
1 TTAATTTTTAGATTTTGATCTAA
97636 TTAA-TTTTAGATTTTGATCT
1 TTAATTTTTAGATTTTGATCT
97656 TATCTGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.58
Consensus pattern (23 bp):
TTAATTTTTAGATTTTGATCTAA
Found at i:98383 original size:15 final size:15
Alignment explanation
Indices: 98365--98410 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
98355 ATTATACCAC
98365 ATAAATATATAAAAT
1 ATAAATATATAAAAT
98380 ATAAAT-TAATAAATAAT
1 ATAAATAT-AT-AA-AAT
98397 ATAAATATA-AAAAT
1 ATAAATATATAAAAT
98411 GACTTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.15
15 10 0.37
16 2 0.07
17 10 0.37
18 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATATATAAAAT
Found at i:98857 original size:27 final size:28
Alignment explanation
Indices: 98827--98881 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
98817 ATAATATATC
*
98827 AAATACTCTTAAAA-ACATTAAAAAAAT
1 AAATAATCTTAAAATACATTAAAAAAAT
*
98854 AAATAATTTTAAAATACATTAAAAAAAT
1 AAATAATCTTAAAATACATTAAAAAAAT
98882 TTATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (28 bp):
AAATAATCTTAAAATACATTAAAAAAAT
Found at i:98890 original size:25 final size:26
Alignment explanation
Indices: 98835--98894 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
98825 TCAAATACTC
*
98835 TTAAAA-ACATTAAAAAAATAAATAATT
1 TTAAAATACATTAAAAAAAT--ATAATA
*
98862 TTAAAATACATTAAAAAAAT-TTATA
1 TTAAAATACATTAAAAAAATATAATA
98887 TTAAAATA
1 TTAAAATA
98895 GTTGCAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 11 0.37
27 6 0.20
28 13 0.43
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (26 bp):
TTAAAATACATTAAAAAAATATAATA
Found at i:99043 original size:19 final size:18
Alignment explanation
Indices: 99010--99054 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
99000 ACATTAAAAT
99010 AACAA-AAATAACAACCAA
1 AACAACAAATAACAA-CAA
*
99028 AACAACAAATAGCAACAA
1 AACAACAAATAACAACAA
99046 AACCAACAA
1 AA-CAACAA
99055 CAAAAGCAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.69, C:0.24, G:0.02, T:0.04
Consensus pattern (18 bp):
AACAACAAATAACAACAA
Found at i:100765 original size:20 final size:19
Alignment explanation
Indices: 100742--100795 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
100732 CTTTTCTATT
100742 GATACAACTACAGTTCTACC
1 GATACAACTA-AGTTCTACC
* *
100762 GATACAAGTATGCTTCTACC
1 GATACAACTAAG-TTCTACC
*
100782 GAAACAACTAAGTT
1 GATACAACTAAGTT
100796 GCAGACTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (19 bp):
GATACAACTAAGTTCTACC
Found at i:102428 original size:27 final size:28
Alignment explanation
Indices: 102404--102465 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
102394 TGTCTATATG
102404 TATTAAAAATAAAAATA-AATTTATAAA
1 TATTAAAAATAAAAATATAATTTATAAA
* *
102431 TTTTAAAAATAAAAATATAA-TTAAAAA
1 TATTAAAAATAAAAATATAATTTATAAA
*
102458 TTTTAAAA
1 TATTAAAA
102466 GTTACCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
TATTAAAAATAAAAATATAATTTATAAA
Found at i:103406 original size:22 final size:20
Alignment explanation
Indices: 103374--103437 Score: 110
Period size: 20 Copynumber: 3.1 Consensus size: 20
103364 TAAGTTTGAA
103374 ATAAATAGAAAAGTTCAACT
1 ATAAATAGAAAAGTTCAACT
103394 ATAAATGTAGAAAAGTTCAACT
1 ATAAA--TAGAAAAGTTCAACT
103416 ATAAATAGAAAAGTTCAACT
1 ATAAATAGAAAAGTTCAACT
103436 AT
1 AT
103438 CTTATCTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
20 22 0.52
22 20 0.48
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (20 bp):
ATAAATAGAAAAGTTCAACT
Found at i:104040 original size:25 final size:26
Alignment explanation
Indices: 104011--104094 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 26
104001 AACAAAAATA
*
104011 ATTTTAT-TAATATTTA-AATTATTTT
1 ATTTTATATAAT-TTTAGAATGATTTT
104036 ATTTT-TATAATTTTAGAATGATTTT
1 ATTTTATATAATTTTAGAATGATTTT
* * *
104061 GTTTTACATTTAATTTTTAAAAATGATTTT
1 ATTTT--ATATAA-TTTT-AGAATGATTTT
104091 ATTT
1 ATTT
104095 ATTTTTAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
24 5 0.11
25 21 0.45
28 4 0.09
29 4 0.09
30 13 0.28
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (26 bp):
ATTTTATATAATTTTAGAATGATTTT
Found at i:104626 original size:83 final size:85
Alignment explanation
Indices: 104527--104698 Score: 294
Period size: 83 Copynumber: 2.0 Consensus size: 85
104517 TTTAATTATA
104527 TAAAAAAATTAATGAATAATAAATATATAAAATTATTAAATA-T-TAAAATAAAATAAAATAAAT
1 TAAAAAAATTAATGAATAATAAATATATAAAATTATTAAATATTATAAAATAAAATAAAATAAAT
104590 ATTTCATAAAAGATATTTTT
66 ATTTCATAAAAGATATTTTT
*
104610 TAAATAAATTAATGAATAATAAATATATAAAATTATTAAATATTAAAATAAAATAAAATAAAATA
1 TAAAAAAATTAATGAATAATAAATATATAAAATTATTAAATATT---ATAAAATAAAATAAAATA
104675 AATATTTCATAAAAGATATTTTT
63 AATATTTCATAAAAGATATTTTT
104698 T
1 T
104699 TTAAATAATA
Statistics
Matches: 83, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
83 41 0.49
84 1 0.01
88 41 0.49
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (85 bp):
TAAAAAAATTAATGAATAATAAATATATAAAATTATTAAATATTATAAAATAAAATAAAATAAAT
ATTTCATAAAAGATATTTTT
Found at i:104633 original size:44 final size:43
Alignment explanation
Indices: 104570--104698 Score: 124
Period size: 44 Copynumber: 2.9 Consensus size: 43
104560 TATTAAATAT
104570 TAAAATAAAATAAAATAAATATTTCATAAAAGATATTTTTTAAA
1 TAAAATAAAAT-AAATAAATATTTCATAAAAGATATTTTTTAAA
* * *
104614 TAAATTAATGAAT-AATAAATA--T-ATAAAA-TTATTAAATATTAAAA
1 TAAAATAA--AATAAATAAATATTTCATAAAAGATATT---T-TTTAAA
104658 TAAAATAAAATAAAATAAATATTTCATAAAAGATATTTTTT
1 TAAAATAAAAT-AAATAAATATTTCATAAAAGATATTTTTT
104699 TTAAATAATA
Statistics
Matches: 67, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
40 4 0.06
41 6 0.09
42 4 0.06
43 1 0.01
44 37 0.55
45 1 0.01
46 4 0.06
47 6 0.09
48 4 0.06
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (43 bp):
TAAAATAAAATAAATAAATATTTCATAAAAGATATTTTTTAAA
Found at i:105175 original size:66 final size:65
Alignment explanation
Indices: 105007--105206 Score: 224
Period size: 66 Copynumber: 3.0 Consensus size: 65
104997 ACTTTTCAAG
* * * *
105007 GAGCCGTTATTACATTTCAAAATTTGAGATCTCATATTCTTTTTCTAAATTTAACGATTACTTTT
1 GAGCCGTTGTTACATTTCAAAATTTGAAATCTCAT-CTCTTTTTTTAAATTTAACGATTACTTTT
105072 T
65 T
** **
105073 GAGGAGCTTTTGTTACATTTTTAAATTTGAAATCTCATCTCCTTTTTTTTAAATTTAACGATTAC
1 ---GAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCT-C-TTTTTTTAAATTTAACGATTAC
105138 TTTTT
61 TTTTT
* *
105143 -CGCCGTTGTTACATTTCAAAATTTGAAATCTCATCTCATTTATTTAAATTTAACGGA-TACTTT
1 GAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCTC-TTTTTTTAAATTTAAC-GATTACTTT
105206 T
64 T
105207 CAAGTAACCT
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
65 23 0.20
66 33 0.29
68 1 0.01
69 30 0.27
70 26 0.23
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.47
Consensus pattern (65 bp):
GAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCTCTTTTTTTAAATTTAACGATTACTTTTT
Found at i:105242 original size:69 final size:67
Alignment explanation
Indices: 104997--105254 Score: 242
Period size: 69 Copynumber: 3.8 Consensus size: 67
104987 ATAACAACTA
* * *
104997 ACTTTTCAAGGAGCCGTTATTACATTTCAAAATTTGAGATCTCATATTCTTTTTCTAAATTTAAC
1 ACTTTTCAAGGAGCCGTTGTTACATTTCAAAATTTGAAATCTCAT-CTCTTTTT-TAAATTTAAC
105062 GATT
64 GATT
** ** **
105066 ACTTTTTGAGGAGCTTTTGTTACATTTTTAAATTTGAAATCTCATCTCCTTTTTTTTAAATTTAA
1 ACTTTTCAAGGAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCT-C--TTTTTTAAATTTAA
105131 CGATT
63 CGATT
105136 ACTTTTTC-----GCCGTTGTTACATTTCAAAATTTGAAATCTCATCTCATTTATTTAAATTTAA
1 AC-TTTTCAAGGAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCTC-TTT-TTTAAATTTAA
105196 CGGA-T
63 C-GATT
* * * * * *
105201 ACTTTTCAAGTAACCTTTGTTATATTTCAAAATTT-AGAATCTTATCCCTTTTTT
1 ACTTTTCAAGGAGCCGTTGTTACATTTCAAAATTTGA-AATCTCATCTCTTTTTT
105255 CTATCGGCTA
Statistics
Matches: 157, Mismatches: 20, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
64 8 0.05
65 16 0.10
66 33 0.21
67 3 0.02
68 5 0.03
69 67 0.43
70 16 0.10
71 9 0.06
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (67 bp):
ACTTTTCAAGGAGCCGTTGTTACATTTCAAAATTTGAAATCTCATCTCTTTTTTAAATTTAACGA
TT
Found at i:105254 original size:135 final size:135
Alignment explanation
Indices: 105009--105254 Score: 313
Period size: 135 Copynumber: 1.8 Consensus size: 135
104999 TTTTCAAGGA
* * **
105009 GCCGTTATTACATTTCAAAATTTGAGATCTCATATTCTTTTTCTAAATTTAACGATTACTTTTTG
1 GCCGTTATTACATTTCAAAATTTGAAATCTCATACTCTTTTTCTAAATTTAACGATTACTTTTCA
* * **
105074 AGGAGCTTTTGTTACATTTTTAAATTTGAAATCTCATCTCCTTTTTTTTAAATTTAACGATTACT
66 AGGAACCTTTGTTACATTTCAAAATTTGAAATCTCATCTCCTTTTTTTTAAATTTAACGATTACT
105139 TTTTC
131 TTTTC
*
105144 GCCGTTGTTACATTTCAAAATTTGAAATCTCAT-CTCATTTATT-TAAATTTAACGGA-TACTTT
1 GCCGTTATTACATTTCAAAATTTGAAATCTCATACTC-TTT-TTCTAAATTTAAC-GATTACTTT
* * *
105206 TCAAGTAACCTTTGTTATATTTCAAAATTT-AGAATCTTATC-CCTTTTTT
63 TCAAGGAACCTTTGTTACATTTCAAAATTTGA-AATCTCATCTCCTTTTTT
105255 CTATCGGCTA
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
134 11 0.12
135 80 0.84
136 4 0.04
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.48
Consensus pattern (135 bp):
GCCGTTATTACATTTCAAAATTTGAAATCTCATACTCTTTTTCTAAATTTAACGATTACTTTTCA
AGGAACCTTTGTTACATTTCAAAATTTGAAATCTCATCTCCTTTTTTTTAAATTTAACGATTACT
TTTTC
Found at i:105284 original size:55 final size:55
Alignment explanation
Indices: 105217--105369 Score: 229
Period size: 55 Copynumber: 2.8 Consensus size: 55
105207 CAAGTAACCT
* * *
105217 TTGTTATATTTCAAAATTTAGAATCTTATCCCTTTTTTCTATCGGCTACTTTTGG
1 TTGTTAGATTTCAAAATTTAGAATCTCATCCCTTTTTTCTAACGGCTACTTTTGG
*
105272 TTGTTAGATTTCAAAATTTAAAATCTCATTCCC-TTTTTCTAACGGCTACTTTTGG
1 TTGTTAGATTTCAAAATTTAGAATCTCA-TCCCTTTTTTCTAACGGCTACTTTTGG
105327 TTGTTAGATTTCAAAATTT-GAAATCTCATCCCCTTTTTTCTAA
1 TTGTTAGATTTCAAAATTTAG-AATCTCAT-CCCTTTTTTCTAA
105370 ATTTGTCTTT
Statistics
Matches: 89, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
54 1 0.01
55 75 0.84
56 13 0.15
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.48
Consensus pattern (55 bp):
TTGTTAGATTTCAAAATTTAGAATCTCATCCCTTTTTTCTAACGGCTACTTTTGG
Found at i:112491 original size:349 final size:349
Alignment explanation
Indices: 111840--112886 Score: 1896
Period size: 349 Copynumber: 3.0 Consensus size: 349
111830 GATGCAATGA
111840 TATTGGGAAGACACATTCAGCTTACTATATAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
1 TATTGGGAAGACACATTCAGCTTACTATATAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
*
111905 TGAAACCAGCAAATGATACTCAATCTTGGAACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
66 TGAAACCAGCAAATGATACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
* *
111970 TGATGGAAGAGATGATTTGATTCAACTGATACTGAAGTGCATTGCGTTTTATGTTAAAACATGTT
131 TGATGGAAAAGATGATTTGATTCAACTGATACTGAAGTGCATTTCGTTTTATGTTAAAACATGTT
112035 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
196 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
*
112100 TACATTGGTTGATCTAATTAAGCTTTCCTGAAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
261 TACATTGGTTGATCTAATTAAGCTTTCCTGCAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
112165 GGGATGCATACAAGAAATTTCTTG
326 GGGATGCATACAAGAAATTTCTTG
* * * *
112189 TATTTGGATGATACATTCAGCTTACTATATAGCATATGCTTTGCACATTGAGTCCAAGTCTAAGA
1 TATTGGGAAGACACATTCAGCTTACTATATAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
*
112254 TGAAACCAGCAAATGAAACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
66 TGAAACCAGCAAATGATACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
* * * *
112319 TGAAGAAAAAGATGATTTGATTCAACTGATACTGAAGTGCATTTTGTTTTACGTTAAAACATGTT
131 TGATGGAAAAGATGATTTGATTCAACTGATACTGAAGTGCATTTCGTTTTATGTTAAAACATGTT
112384 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
196 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
*
112449 TACATTGGTTGATCTAATTAAGCTTTTCTGCAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
261 TACATTGGTTGATCTAATTAAGCTTTCCTGCAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
*
112514 GGGATGCACACAAGAAATTTCTTG
326 GGGATGCATACAAGAAATTTCTTG
*
112538 TATTGGGAAGACACATTCAGCTTACTATTTAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
1 TATTGGGAAGACACATTCAGCTTACTATATAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
*
112603 TGAAACCAGCAAATGATACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTAT
66 TGAAACCAGCAAATGATACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
*
112668 TGATGGAAAAGATGATTTGATTCAACTGATACTGAAGTACATTTCGTTTTATGTTAAAACATGTT
131 TGATGGAAAAGATGATTTGATTCAACTGATACTGAAGTGCATTTCGTTTTATGTTAAAACATGTT
* *
112733 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCTTTTATATTTGTTGTGAATT
196 TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
* *
112798 TACATTGATTGATCTAATTAAGCTTTCCTGCAAATGTAGTAATGCTCAACCAATAGAGAAGTTGA
261 TACATTGGTTGATCTAATTAAGCTTTCCTGCAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
112863 GGGATGCATACAAGAAATTTCTTG
326 GGGATGCATACAAGAAATTTCTTG
112887 CTCGCTCAAT
Statistics
Matches: 665, Mismatches: 33, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
349 665 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (349 bp):
TATTGGGAAGACACATTCAGCTTACTATATAGCATATGCTTTGCACATGGAGTCCAAGTCTAAGA
TGAAACCAGCAAATGATACTCAATCTTGGGACATCTAGGTAAAAGCTGTCTTCCATATTTAGTTT
TGATGGAAAAGATGATTTGATTCAACTGATACTGAAGTGCATTTCGTTTTATGTTAAAACATGTT
TTTTCTCTCAAGGTTTACTTGGTTGATGTGTAGATTTTTTGATCCATTTATACTTGTTGTGAATT
TACATTGGTTGATCTAATTAAGCTTTCCTGCAAATGTAGTAATGCTTAACCAATAGAGAAGTTGA
GGGATGCATACAAGAAATTTCTTG
Done.