Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010996.1 Kokia drynarioides strain JFW-HI SEQ_125966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69350
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Warning! 2 characters in sequence are not A, C, G, or T
Found at i:513 original size:215 final size:212
Alignment explanation
Indices: 4--9417 Score: 6463
Period size: 216 Copynumber: 44.3 Consensus size: 212
1 GGC
* * * * * * *
4 TTCTCCCTTGGTTCTTGACTGAACTT-TCGAACATGTCAAACTTTTACGAGTTATTTTATAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTT
* * * *
68 CGGTTCCTTAAAGTATTTAAGATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCAG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-G
* * * * * * * * *
133 GAAATCGGATCATTTGGTTCAAATATTTTATCCTTTTGTAAACAACTTTCGGTCTTTCAATTAAA
128 AAAATCGCATCATTTGGTCCAAATA-GTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
*
198 ATCTTATTTATGTGAGAATAGT
192 AACTTATTTATGTGAGAAT-GT
* ** * *
220 TTCTCTCTTGGTTCTTGGTCGAACTTCCGAACTTGTCAAACTTTTTTGAGTTCTTTTATAACTTA
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * *
285 AGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCAATTTTTCGAACATTCCATTCTTCGA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTC-TCGA
* * *
350 AAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAAATTTCGGTC-TTGAATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
414 ACTTATTTAAT-TGAGAATGAT
193 ACTTATTT-ATGTGAGAATG-T
* *
435 TTCTCTCTTGGTTCTAGGCCGAACTTCTAAACTATTCAAACTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
500 GGTTCCGTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTTAAACATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* * * * *
565 AAATCGCATCATTTGGTCCAAATAATCTATCATTTTGTAAACAACTCTTGGTCTTTGGATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
*
630 ATTTATTTATGTGAGAAT-T
193 ACTTATTTATGTGAGAATGT
* * * * * *
649 GTT-TCTCTTGCTTCTTGGCCGAACTTCTGAACTTGTCAAAATTTTTTGGGTTCTCTTATAACTT
1 -TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTT
* * * * * * * ** *
713 CGATT-CTTAAAGTATTTATGACAATCGATTCCTTCGAGCAATTATCCAAACATTTAATGCTCGA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA
* * * *
777 GAAATCACATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTTAGTCTTTTAATTAAA
129 -AAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
* * *
842 AATTTATTTACGTGAGAATTAT
192 AACTTATTTATGTGAGAA-TGT
* * ** * * *
864 TTATGTCTTGGTTCTTGGCTAAACCTCTGAACTTTTCAAACTTTTTCGAGTTCTTTTATACCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * *
929 GGTTCCTTAGA-TCATCCAAGATGAT-C-TT-CTTTGAACAATTTCTCAAACATTTCATTCTCGA
65 GGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA
* * * * *
990 GAAATCGCATCATTTGATCCAAATAATCTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAA
129 -AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
* *
1055 AACTTATTTATATGAGAAATCT
192 AACTTATTTATGTGAG-AATGT
* * * * * * *
1077 TTCTCTCTTGTTTATTGGCCGAACGTCCAAAATTTTCAAAATTTTT--AGTTCTTTTACAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAAC-TTCTAAACTTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* *
1140 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCAATTCTCAGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* * * * * * * * * *
1205 ATATCGTATCATTTGGTCCAAATAATCTTTCATTTTGTAAACAGCTTTTAGTTTTTGGACTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
1270 ACTTATTTATGTGAGAATCGT
193 ACTTATTTATGTGAGAAT-GT
* * * *
1291 TTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTTGTGAAACTTTTTCAAGTTCTTTTGA-AACT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTT-TCAAACTTTTTCGAGTTCTTTT-ATAACT
* * * * * * * *
1354 TCGGTTCCTTAAAGCATTCAAGAGGATCGAATCCTTTGACCAATTTTTCGAACATTCCATGCTCG
63 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCG
* * * * *
1419 AGAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTTGTAAAAAATTTTTTGTCTTTGAATTAA
128 A-AAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* *
1484 AAACTTATTTACGTAAGAATGGT
191 AAACTTATTTATGTGAGAAT-GT
* ** * *
1507 TTCTCTTTTGGTTCTTGGCCGAACTTCCGAACTTTTCAAGCTTTTTCGAGTTCCTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* ** *
1572 GGTTCCTTATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* * * * * *
1637 AAATCACATCTTTTGGTCCAAATAATCTGTCATTTTGTAAAGAATTTTTGGTCTTTGGATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
*
1702 ACTTATTTATGTGAGAATTTT
193 ACTTATTTATGTGAGAA-TGT
** *
1723 TTCTCTCTTGGTTCTTGGTTGAACTT-TCGAACTTGTCAAACGTTTTT-GAGTTCTTTTATAACT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTT-TCAAAC-TTTTTCGAGTTCTTTTATAACT
* * * * * **
1786 TCGGTTCCTTAAAATATTCAAGACGATCGATTCCTCCGAGCAATTATCCAAACATTCCAGCCTCG
63 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCG
* * * * *
1851 AGAAATTGCACCATTTGG-CCAAAATAGTTTGTCCTTTTGTAAAAAAACTTTCGATCTTTGAATT
128 A-AAATCGCATCATTTGGTCC-AAATAG-TTGTCATTTTGT-AAAAAACTTTTGGTCTTTGAATT
* * *
1915 AAAAACTTATTTACGTGCGAATTCT
189 AAAAACTTATTTATGTGAGAA-TGT
* * * *
1940 TTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCGAAGTTTTTCGAGTTATTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
2005 GGTTCCTTAAAGTATTTAAGACGATTCATTTCTTCGAACAATTTTTCAAAAATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* ** * * * *
2070 AAATTGCATCATTCAGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGATCTTTGGATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* *
2135 ACTTAATTATGTGAGATTTGT
193 ACTTATTTATGTGAGA-ATGT
* * * * *
2156 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAA-TTTCCAAAATTTTTTGAGTTCTTTTACAACAT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTT
*** * * * * * * *
2220 AAATTCCTTAAAATAATAAAGACAATCCATTCCTTCGAGTAATTTTTCGAACATT-CGTTCTCGG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-G
* * * * * * *
2284 GAAATCACATCATTTGGTCAAAATAATCTGT-ATTTTTGTAAACAACTTTTAGTCTTTGGATTAA
128 AAAATCGCATCATTTGGTCCAAATAGT-TGTCA-TTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* *
2348 AAACCTATTTATGAGAGAATTGT
191 AAACTTATTTATGTGAGAA-TGT
** * *
2371 TTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTTGCAATA-TTTTTTGAGTTCTTTTAAAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTT-CAA-ACTTTTTCGAGTTCTTTTATAACTT
* * * * ** *
2435 CGGTTCCTTAAAGTATTCAAGACAATCGATTCCTTCGAGTAA-TTTTCTGAACATTTTATGCTCG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATTCTCG
* *
2499 AAAATCGCATCATTTGGTCCAAATAGTTTGTCTTTTTGTAAAAAACTTTTGGTCATTGAATTAAA
128 AAAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
** *
2564 AACTTATTTACATGAGAGTGGT
192 AACTTATTTATGTGAGAAT-GT
* * * *
2586 TTCTCTCTTGGTTCTTGGCCGAACTTCAAAACTTTTCCAACTTTTTCGAGTTCATTTATAATTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
2651 GTTTCCTTAAAGTATTCAAGGCAATCCATTCCTTCGAGCAATTTTTCAAACATTCCACTCTTGAA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGAA
* * * * *
2716 AATCACATCATTTGGTACAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAAA
130 AATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAA
2781 CTTATTTATGTGAGAATTGT
194 CTTATTTATGTGAGAA-TGT
* * *
2801 TTCT-T-TTGGTTCTTGGCCGAACTT-TCGAGCTTGTCAAACTTTCTT-GAGTTATTTTATAACT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTT-TCAAACTTT-TTCGAGTTCTTTTATAACT
* * * * * * ** *
2862 TCGGTTCCTTAAAATATTTAAGACGATCGATTCCTTCGAGCAATTTTCCAAAAATTCGAACCTTG
63 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTC-TC
* * * * **
2927 GAAAAATAGCACCATTTGGTCCAAAACAGTTGGTCCTTTTGTAAAAAACTTTCAGTCTTT--A--
127 G-AAAATCGCATCATTTGGTCC-AAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATT
*
2988 AAAAACTTATTTATGTGAGAGTTGT
189 AAAAACTTATTTATGTGAGA-ATGT
* * * * *
3013 TTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTTTTAATCTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * *
3078 GGTTCCTTAAAGTATTCAAGACGATCCATTTCGTGGAGTAATTTTTCGAACATTCGATTCTTGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTC-TCGA
* * * * * * *
3143 AAATTGCATCATTTGGTCTAAATAATCTGTTATTTTGTAAACAACTTTTGGACTTTGGATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* *
3208 ACTTATTTACGTGAGAATTAT
193 ACTTATTTATGTGAGAA-TGT
* * * *
3229 TTCTCTCTTGGTTCTTAGTCGAACTTCCAAACTTGTCAAACTTTTAT-TAGTTCTTTT-TAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTT-TCGAGTTCTTTTATAACTT
* * * * * * * *
3292 TGGTTCTTTAAAGTGTTCAAGGCAATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA
* * * *
3357 GAAATCACATCATTAGGTCCGAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 -AAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
* * *
3422 GACTTATTTACGTGAAAATTGT
192 AACTTATTTATGTGAGAA-TGT
* * * * * *
3444 CTCTCTCCTGGTTCATGGCCGAA---C---A-TGTCAAACTTTTAT-AAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTTCAAACTTTT-TCGAGTTCTTTTATAACTTC
* * * * * * * *
3501 GGTTCTTTAAAGTATTCAAGGCAATCCATTCCTTCAAGTC-ATTTTCCGAGCATTCCATACTCGA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTTCAAACATTCCATTCTCGA
* * * * * * ** *
3565 GAAATCGCATCATTTTGACCAAGTAGTTTGTTATTTTGTAAACAACTATTACTTTTTGAATTAAA
129 -AAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
*
3630 AACTTATTTAAGTGAGAATGGT
192 AACTTATTTATGTGAGAAT-GT
* * * * * * *
3652 TTCTCTCTTGGTTGTTGGTCGAACTTCCAAGCCTTCCAAACTTTTTCGAGTTCTATTATAGCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAA-ACTTTCAAACTTTTTCGAGTTCTTTTATAACTTC
** * * * * * *
3717 ATTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAAC-A--TTT----NA-TGC--TC-AGGA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGAA
* * **
3771 AATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTCAGAATTAAAAA
130 AATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAA
* *
3836 CTTATTTACGTAAGAATGGT
194 CTTATTTATGTGAGAAT-GT
* ** * * * * * *
3856 TTCTCCCTTGGTTCTTTACTGAACTTTTGAACTTGCCAAACTTTTACGAGTTATTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
3921 AGTTCCTTAAAATATTCAAGACAATCCATTCTTTCGAGCAATTTTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA-
* * * * * * * *
3986 AAAGT-GCATAATTT-TTCCCAAATATTTTATCCTTTTGTAAATAACTTTCGGTGTTTGAATTAA
129 AAA-TCGCATCATTTGGT-CCAAATA-GTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
4049 AAACTTATTTATGTGAGAATTGT
191 AAACTTATTTATGTGAGAA-TGT
* ** *
4072 TTCTCTCTTAGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
4137 GGTTCCTTAAAGTATTTAGGATGATCGATTCCTTCTAGCAATTTTCCAAACATTCCATTCTCGAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA-
* * **
4202 AAATTGCATCATTTGGTCCAAATAGTTAGTTC-TTTTGTATAAAACTTTCAGTCTTTGAATTAAA
129 AAATCGCATCATTTGGTCCAAATAGTT-G-TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
*
4266 AACTTATTTACGTGAGAAT-T
192 AACTTATTTATGTGAGAATGT
* * * * * *
4286 AATTATCTTTTGGTTCTAGGCCGAACTT-TCAAACGTCTCAAACATTTTCGAGTCCTTTTATAAC
1 --TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAAC-TTTCAAACTTTTTCGAGTTCTTTTATAAC
* * * * * *
4350 TTTGGTTCCTTAAAGTATTCAATACGATCCATTTCTTCGAACAAATTTTCAAAC--TCGA-----
62 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC
* * * ** * * *
4408 G-AAATCGCATCATTTGATCCAAAAAATCTGTCATTTTACAAACAACTATTGGTCTTTGGATTAA
127 GAAAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* *
4472 AAATTTATTTATATGAGAATTGT
191 AAACTTATTTATGTGAGAA-TGT
* * *
4495 TTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTTAAACTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
4560 GGTTCCTTAAAGTATTCAAGATGATCGATTCTTTCGAGCAA-TTTTCGAAACTTTCTATTCTTGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATTC-TCG
* * * * **
4624 GAAATCACATCATTTGATCCAAATAGTTAGTCCTTTTGTAAAAAACTTATT--TACGTGAGAATT
128 AAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTT-TTGGT-C-TTTGAATT
**** * * * * * **
4687 ATTTCCGTCTTGGATCTAGACCAAACT
189 AAAAACTTATT-TATGT-GA-GAATGT
* **** *** * * **
4714 TTCGAGCT-TTACACACTTTTTCGAA-TTCT----TTT-ATAAC--TTT-GACTCCTTAAAGT-A
1 TTC--TCTCTT-GGTTCTTGGCCGAACTTCTAAACTTTCA-AACTTTTTCGAGTTCTTTTA-TAA
* * ** * * * * * *
4768 -TTCAAG--ACGAAACATTTCTTCAA-AC-A---ATT-TTTCGAACATTTTTTCTCAAGA-AATC
61 CTTC-GGTTCCTTAA-A-GTATTCAAGACGATCCATTCCTTCGAGCA-ATTTT-TCAA-ACATTC
* * * * * *
4823 GCA-TCATTTG---GTC-CA--A-ATAGT-C-AGTCA-TT------TTGTAAACAACTTTTGGTC
120 -CATTC--TCGAAAATCGCATCATTTGGTCCAAAT-AGTTGTCATTTTGTAAAAAACTTTTGGTC
** * *
4871 TTTGAATTAAAATTTTA-TTTATATGAGAATTGT
181 TTTGAATTAAAA-ACTTATTTATGTGAGAA-TGT
* *
4904 TTCTCTCTTGGTTCTTGGCCGAACATTC-GAACTCGTCAAACTTTTTCGAGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGCCGAAC-TTCTAAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTT
* * * * * *
4968 CGGTTCCTTAAAGTATTCAAAATGATCAATTCCTTC-ATGAAATTTTCCAAACATTCTATTCTCG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCAAACATTCCATTCTC-
* *
5032 GGAAATCGCATCATTTGGTCCAAATAGTTAGTCATTTTGTAAAAAACTTTTGGTCTTTCAATTAA
127 GAAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* * *
5097 AAACCTATTTACGTGAGAATTAT
191 AAACTTATTTATGTGAGAA-TGT
* *
5120 TTCTCTCTTGGTTCTAGGCCGAACTT-TCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTT
* * * ** * * *
5184 TGGTTCCTTAAAGTATTCAAGAAGATCCATTTCTTCGAATAA-TTTTCGAACATTCCGTCCTCGG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-G
* * * * * *
5248 GAAATCGCATCATTTGGTCCAAATA------A-TCTGT-CACAACTTTTGGTCTTTGGATTAAAT
128 AAAATCGCATCATTTGGTCCAAATAGTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* * *
5305 ATTTATTTTTGAGAGAATTGT
193 ACTTATTTATGTGAGAA-TGT
* * * * *
5326 TTCTCTCTTGTTTCTTGACCAAACTTCTGAACTTGTCAAACTTTTTAGAGTTCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * * *
5391 GGTTACTTAAAGTATTCATGACTATCAATTCCTTTGAGCAA-GTATCTGAACATTCCATGCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATTCTC-G
* * * *
5455 TAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTGGGAA-TAA
128 AAAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTT-TGAATTAA
** *
5519 AATTTTA-TTCTGTGAGAATTGT
191 AAACTTATTTATGTGAGAA-TGT
* ** * * *
5541 TTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTTTCAAACTTTGTCGAGTACTTTTATATCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * *
5606 AGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGATCAATTTTCCGAACATTTCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* * * * *
5671 AAATCACATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
** *
5736 ACTTATTTACATAAGAAT-T
193 ACTTATTTATGTGAGAATGT
* * * * *
5755 ATTCCACTCGTGGTTCTAGGCCAAAC-T-T--ACTTTGTAAACTTTTTCGAGTTCTTTTATAACT
1 -TT-CTCTCTTGGTTCTTGGCCGAACTTCTAAACTTT-CAAACTTTTTCGAGTTCTTTTATAACT
** * * * * * * *
5816 TTTGCTCCTTAAAGTATTCAGGATGATCCATTTCTTCGAACAATTTTTCGAACATT-TAGTTCTC
63 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCA-TTCTC
* * * * *
5880 GGGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTA
127 -GAAAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTA
*
5945 AAAATTTATTTATGTGAGAATTGT
190 AAAACTTATTTATGTGAGAA-TGT
* * * *
5969 TTCTCT-TT-GTTCTTGGCAGAACTTCTTAACTTGTAAAACTTTTTCGAGTACTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
6032 GGTTCCTTAATGTATTCAAGACAATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTTTCTAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA-
* * * * * *
6097 ACATCTCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAGAACTTTCGGTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* * * *
6162 ACTTAGTTACGTGATAATTAT
193 ACTTATTTATGTGAGAA-TGT
* * * * *
6183 TTCACTCTTGGTT-TTAGGCCGAACTTCCAAACTTTGAAAACTTTTTCGAGCTCTTTTACAACTT
1 TTCTCTCTTGGTTCTT-GGCCGAACTTCTAAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTT
* * * ** *
6247 TGGTTCCTTAAAGTATTCAAGACGATCCATTTCGTCGAATAATTTTTCGAACATTCCATTCTCGG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-G
* * *
6312 GAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT-TCTTGAATTAA
128 AAAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCT-TTGAATTAA
*
6376 AAATTTATTTATGTGAGAAT-T
191 AAACTTATTTATGTGAGAATGT
** * * * *
6397 GTT-TCTCTTGGGACTTGGCCGAGCTTCTGAACTTGTCAAACTTTTTCGAGTACGTTTATAACTT
1 -TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTT
* ** * * * * *
6461 CGGTTCCATAAAGTATTCAAGACGATTAATGCCTTC-ACGTAATTTTTCGAACATTTCATTCTTG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCAAACATTCCATTC-TC
* * * * **
6525 GGAAATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAA
127 GAAAATCGCATCATTTGGTCCAAAT-AGTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
*
6589 AAACTTATTTACGTGAGAATTGT
191 AAACTTATTTATGTGAGAA-TGT
* * * * * * * * *
6612 TTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGCGAAGTTTTTCGTGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * **
6677 GGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCCAACAATTTTTCGAACATTCCGTACTTAAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA-
** ** * * * * *
6742 AAATTTCATCATCAGGTCCAAATAATCTGTTATTTTGGAAACAACTTTTGGTCTTTGGATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* *
6807 ATTTATTTATGTGAGAAACGT
193 ACTTATTTATGTGAG-AATGT
* * * * * * *
6828 TTCTGTCTTGGTTCTTGGCCGAACTTCTGAACTAGTCAAACTGTTTCAAGTTCTCTTATAGCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * *
6893 GGTTCCTTATAGTATTCAAGGCGATCGATTCCTACGAGCAA-TTCTCTGAGCATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATTCTC-G
* * * * * * * *
6957 GAAATCGCATCACTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAAATTAT--T-TATG---TGAG
128 AAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
* * *
7016 AA-TTA-TT-TCT----CT-C
192 AACTTATTTATGTGAGAATGT
* ** * ** * *
7029 TTCGT-TCTAGGCCAAACTT--ACGAACTT-TACAAAC-TT-----TTTTGAG-TTTTTTTTATA
1 TTC-TCTCTTGG---TTCTTGGCCGAACTTCT--AAACTTTCAAACTTTTTCGAGTTCTTTTATA
* * * * * *
7083 ACTTTGGTTCCTTCAAA-TATTTAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTTCATT
60 ACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATT
* * * * * *
7147 CTCGAGAAATCGTATCATTCGGTACAAATAATCTGTC-TTTCTGTAAACAACTTTTGGTCTTTGG
124 CTCGA-AAATCGCATCATTTGGTCCAAATAGT-TGTCATTT-TGTAAAAAACTTTTGGTCTTTGA
**
7211 ATTAAAATTTTATTTATGTGAGAATTGT
186 ATTAAAAACTTATTTATGTGAGAA-TGT
* * * * * *
7239 TTCTCTCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTCTCAAGTACTTTTATATCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
** ** ** *
7304 GGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-GA
* * * *
7369 AAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAGAAAACTTTCGGTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
* * *
7434 ACTTATTTACGTAAGAATTAT
193 ACTTATTTATGTGAGAA-TGT
* * * * * * *
7455 TTCACTCGTGGTTCTAGGCTGAAC-T-T--ACTTTGTAAACTTTTTCGAGTTCTTTTCTAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * *
7516 TGCTCCATAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACA-TCCGTTCTCGAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGA-
* * * * * * * *
7580 AAATTGCAGCATTTGGTCTAAATAATCTGTCAATTT-TAAACAACTTTTGGTCTTTGGATTAAGA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
*
7644 ATTTATTTATGTGAGAAT-T
193 ACTTATTTATGTGAGAATGT
* * ** * * *
7663 GTT-TCTCTTGGTTCATGGCCAAACTTCCGAATTTGTCAAACTTTTTCGAGTACCTTTATAACTT
1 -TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTT
* * *
7727 CGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGG
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTC-TCG
* * * * * * *
7792 GAAATAGCATCATTTGGTCCAAATAATTATTCCTTTTGTAAAAAAACTTTCGATCTTTGAATTAA
128 AAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGT-AAAAAACTTTTGGTCTTTGAATTAA
* * *
7857 AAACTTACTTACGTGAGAATTAT
191 AAACTTATTTATGTGAGAA-TGT
* * * * * * * *
7880 TTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGAAAACTTTTTTGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * * *
7945 GGTTCCTTAAAGTGTTCAAGACGATCCATTTCTTTGAACAAATTTTCGAACATTCCGTTCTTGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTC-TCGA
* * * *
8010 AAATCGCATCATTTGTTCCAAATAATGTGTC-TGTTTGTAAACAACTTTTGGTTTTTCG-ATTAA
129 AAATCGCATCATTTGGTCCAAATAGT-TGTCAT-TTTGTAAAAAACTTTTGGTCTTT-GAATTAA
** *
8073 AATTTTATTTATGTGAGAAACGT
191 AAACTTATTTATGTGAG-AATGT
* * * * ** * *
8096 TTCTCTCTTGGTTCTTGGTCTAACTTTTGAACCTGACAAACTTTTTCAAGTTCTTTTATTACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCT-AAACTTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
8161 GGTTCCTTAAAGTATTCAAGACGAT-TAGTTCTTTCGAGCAATTTTCCGAGCATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCAAACATTCCATTCTC-G
* * **
8225 GAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAA-TATTT--TACGTGAGAATT
128 AAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACT-TTTGGT-C-TTTGAATT
*** * * **
8287 -ATTTCTCTCTTGGT-TCT-AGGCCAAACT
189 AAAAACT-TATT--TATGTGA-G--AATGT
* **** *** * * * *
8314 TTCGAACT-TTACAAACTTTTTCG-AGTTCT----TTT-ATAGC--TTT-G-TTTC-CTTA-AAG
1 TTC--TCTCTT-GGTTCTTGGCCGAACTTCTAAACTTTCA-AACTTTTTCGAGTTCTTTTATAA-
* * * ** ** * * * * *
8366 TATTC-ATGACGATACATTTCTTCAA-AC-A---ATT-TTTCGAACATTTTGTTCTTAAGA-AAT
61 -CTTCGGT-TCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TTC--AA-ACATT
* * * * *
8423 CGCATAATTTGGTCCAAATAGC--CA----GT-C--AT--T-------TTGTAAACAACTTTTGG
119 C-CAT--TCTCG--AAAATCGCATCATTTGGTCCAAATAGTTGTCATTTTGTAAAAAACTTTTGG
** * *
8470 TCTTTGAATTAAAAATTTAT-TTATATGAGA-ATTGT
179 TCTTTGAATT-AAAAACT-TATT-TATGTGAGAATGT
* *
8505 TTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTTCGAGATCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
8570 GGTTCCTTAAAGTATTCAAAATGATCGATTCCTTC-ATGAAATTTTCCAAACATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCAAACATTCCATTCTC-G
* * * *
8634 GAAATCTCATCATTTGGTCCAAATAGTTAGTCGTTTTGTAAAAAACTTCTGGTCTTTGAATTAAA
128 AAAATCGCATCATTTGGTCCAAATAGTT-GTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
* * *
8699 AACCTATTTACGTGAGAATTAT
192 AACTTATTTATGTGAGAA-TGT
* * ** * *
8721 TTCTCTCTTGGTTCTAGGCTGAACTTCCGAACTTGTCAAACTTTTTCGAGTTTTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * *
8786 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAAATTTTT-GAACATTCC-GTCATCG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTTCAAACATTCCATTC-TC-
* * * * * *
8849 GGAAATCGCATCATTTGGTCCAAATA------A-TCTGT-CACAACTTTTTGTCTTTGGATTAAA
127 GAAAATCGCATCATTTGGTCCAAATAGTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
** *
8906 ATTTTATTTTTGTGAGAATTGT
192 AACTTATTTATGTGAGAA-TGT
* ** **
8928 TTCTCTCTTGTTTCTTGATCGAACTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * * *
8993 GGTTCCTTAAAGTATTCATGACTATCGATTTCTTCGAGTAA-GTATCTGAACATTCCATGCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATTCTC-G
* * * *
9057 TAAATCGCATGATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAA
128 AAAATCGCATCATTTGGTCCAAATAG-TTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAA
*
9122 AACTTATTTACGTGAGAATGGT
192 AACTTATTTATGTGAGAAT-GT
* * * * * * * * *
9144 TTCTC-CATTGGTTCTT-GACTAAGCTTTCAAAAGTGTCAAACTTTTACAAGTTATTTTATAATT
1 TTCTCTC-TTGGTTCTTGGCCGAA-C-TTCTAAACTTTCAAACTTTTTCGAGTTCTTTTATAACT
* * * * * *
9207 TCAGTTCCCTAAAGTATTCAAGACAATCAATTCCTTC--G----------AACATTCCGTTCTCA
63 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCG
* * * * * *
9260 AGAAATCGCATTATTAGGTCCAAATAATCTGTTATTTTGTAAAGAACTTTTGGTCTTTGGATTAA
128 A-AAATCGCATCATTTGGTCCAAATAGT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* *
9325 AAATTTATTTATGTGAGAAACGT
191 AAACTTATTTATGTGAG-AATGT
* * * * * ** * * * *
9348 TTTTGTCTTCGTTCTTGGTCAAACTTCCGAACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
*
9413 TGTTC
65 GGTTC
9418 TCGGGAAATC
Statistics
Matches: 7272, Mismatches: 1471, Indels: 922
0.75 0.15 0.10
Matches are distributed among these distances:
188 9 0.00
189 11 0.00
190 15 0.00
191 8 0.00
192 11 0.00
193 33 0.00
194 16 0.00
195 100 0.01
196 15 0.00
197 24 0.00
198 18 0.00
199 17 0.00
200 16 0.00
201 31 0.00
202 21 0.00
203 32 0.00
204 293 0.04
205 25 0.00
206 158 0.02
207 397 0.05
208 203 0.03
209 43 0.01
210 81 0.01
211 94 0.01
212 383 0.05
213 471 0.06
214 617 0.08
215 1276 0.18
216 2429 0.33
217 373 0.05
218 16 0.00
219 12 0.00
220 15 0.00
221 9 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (212 bp):
TTCTCTCTTGGTTCTTGGCCGAACTTCTAAACTTTCAAACTTTTTCGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATTCTCGAAA
ATCGCATCATTTGGTCCAAATAGTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACT
TATTTATGTGAGAATGT
Found at i:2601 original size:430 final size:427
Alignment explanation
Indices: 4--9417 Score: 8262
Period size: 430 Copynumber: 22.2 Consensus size: 427
1 GGC
* * * * * * *
4 TTCTCCCTTGGTTCTTGACTGAACTTTCGAACATGTCAAACTTTTACGAGTTATTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
69 GGTTCCTTAAAGTATTTAAGATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCAGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * * *
134 AAATCGGATCATTTGGTTCAAAT-ATTTTATCCTTTTGTAAACAACTTTCGGTCTTTCAATTAAA
130 AAATCGCATCATTTGGTCCAAATAATTGTA---TTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * *
198 ATCTTATTTATGTGAGAATAGTTTCTCTCTTGGTTCTTGGTCGAACTTCCGAAC-TTGTCAAACT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACT
* ** * *
262 TTTTTGAGTTCTTTTATAACTTAAGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCAAT
256 TTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
327 TTTTCGAACATTCCATTCTTCGAAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAA
321 TTTT-GAACATTCCATTC-TCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* *
392 AAATTTCGGTC-TTGAATTAAAAACTTATTTAAT-TGAGAA-TGAT
384 AACTTTTGGTCTTTGAATTAAAAACTTATTT-ATGTGAGAATTG-T
* * * *
435 TTCTCTCTTGGTTCTAGGCCGAACTTCTAAACTATTCAAACTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * **
500 GGTTCCGTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTTAAACATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * *
565 AAATCGCATCATTTGGTCCAAATAATCTATCATTTTGTAAACAACTCTTGGTCTTTGGATTAAAA
130 AAATCGCATCATTTGGTCCAAATAAT-TGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
630 ATTTATTTATGTGAGAATTG-TT-TCTCTTGCTTCTTGGCCGAACTTCTGAAC-TTGTCAAAATT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACTT
* * * * * * * * *
692 TTTTGGGTTCTCTTATAACTTCGATT-CTTAAAGTATTTATGACAATCGATTCCTTCGAGCAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
*** ** * * * *
756 ATCCAAACATTTAATGCTCGAGAAATCACATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAA
322 -TTTGAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * * * *
821 ACTTTTAGTCTTTTAATTAAAAATTTATTTACGTGAGAATTAT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * ** * * *
864 TTATGTCTTGGTTCTTGGCTAAACCTCTGAACTTTTCAAACTTTTTCGAGTTCTTTTATACCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * * *
929 GGTTCCTTAGA-TCATCCAAGATGAT-C-TT-CTTTGAACAATTTCTCAAACATTTCATTCTCGA
65 GGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
* * *
990 GAAATCGCATCATTTGATCCAAATAATCTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAA
129 GAAATCGCATCATTTGGTCCAAATAAT-TGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * * * *
1055 AACTTATTTATATGAGAAATCTTTCTCTCTTGTTTATTGGCCGAACGTCCAAAATTTTCAAAATT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTT
* *
1120 TTT--AGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
1183 TTTCAAACATTCAATTCTCAGGATATCGTATCATTTGGTCCAAATAATCTT-TCATTTTGTAAAC
322 TTT-GAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGT-TTGTCATTTTGTAAAC
* * * * * *
1247 AGCTTTTAGTTTTTGGACTAAAAACTTATTTATGTGAGAATCGT
384 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * *
1291 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAACTTTTTCAAGTTCTTTTGA-AACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTT-ATAACTT
* * * * * * * *
1355 CGGTTCCTTAAAGCATTCAAGAGGATCGAATCCTTTGACCAATTTTTCGAACATTCCATGCTCGA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
* * * * * * *
1420 GAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTTGTAAAAAATTTTTTGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATA-ATTGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * *
1485 AACTTATTTACGTAAGAATGGTTTCTCTTTTGGTTCTTGGCCGAACTTCCGAACTTTTCAAGCTT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTT
* * *
1550 TTTCGAGTTCCTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATCCATTCCTTCGAGCAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
* * * * * *
1615 TTTTGAACATTCCATTCTCGGGAAATCACATCTTTTGGTCCAAATAATCTGTCATTTTGTAAAGA
321 TTTTGAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * *
1680 ATTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTTT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
** *
1723 TTCTCTCTTGGTTCTTGGTTGAACTTTCGAACTTGTCAAACGTTTTT-GAGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAAC-TTTTTCGAGTTCTTTTATAACTT
* * * * * * ** *
1787 CGGTTCCTTAAAATATTCAAGACGATCGATTCCTCCGAGCAATTATCCAAACATTCCAGCCTCGA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
* * * * * * *
1852 GAAATTGCACCATTTGG-CCAAAATAGTTTGTCCTTTTGTAAAAAAACTTTCGATCTTTGAATTA
129 GAAATCGCATCATTTGGTCC-AAATA-ATTGT-ATTTTGT-AAACAACTTTTGGTCTTTGAATTA
* * * * * * *
1916 AAAACTTATTTACGTGCGAATTCTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCGAAG
190 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAAC
* * * * * *
1981 TTTTTCGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATTCATTTCTTCGAACAA
255 TTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * ** * *
2046 TTTTTCAAAAATTCCATTCTCGGGAAATTGCATCATTCAGTCCAAATAATCTGTCATTTTGTAAA
320 TTTTT-GAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
* * * *
2111 CAACTTTTGATCTTTGGATTAAAAACTTAATTATGTGAGATTTGT
383 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * *
2156 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAATTTCCAAAATTTTTTGAGTTCTTTTACAACATA
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTTC
** * * * * * *
2221 AATTCCTTAAAATAATAAAGACAATCCATTCCTTCGAGTAATTTTTCGAACATT-CGTTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * *
2285 AAATCACATCATTTGGTCAAAATAATCTGTATTTTTGTAAACAACTTTTAGTCTTTGGATTAAAA
130 AAATCGCATCATTTGGTCCAAATAAT-TGTA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * ** **
2350 ACCTATTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTTGCAATA-TT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAA-ACTT
* * * * * *
2414 TTTTGAGTTCTTTTAAAACTTCGGTTCCTTAAAGTATTCAAGACAATCGATTCCTTCGAGTAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
** * * *
2479 TTCTGAACATTTTATGCTCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCTTTTTGTAAAAAA
322 TT-TGAACATTCCATTCTCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
* ** * *
2544 CTTTTGGTCATTGAATTAAAAACTTATTTACATGAGAGTGGT
386 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
*** * * *
2586 TTCTCTCTTGGTTCTTGGCCGAACTTCAAAACTTTTCCAACTTTTTCGAGTTCATTTATAATTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * *
2651 GTTTCCTTAAAGTATTCAAGGCAATCCATTCCTTCGAGCAATTTTTCAAACATTCCACTCT-TGA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * *
2715 AAATCACATCATTTGGTACAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAA
130 AAATCGCATCATTTGGTCCAAATAAT-TGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* *
2780 ACTTATTTATGTGAGAATTGTTTCT-T-TTGGTTCTTGGCCGAACTTTCGAGC-TTGTCAAACTT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACTT
* * * * *
2842 TCTT-GAGTTATTTTATAACTTCGGTTCCTTAAAATATTTAAGACGATCGATTCCTTCGAGCAAT
257 T-TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
** * * ** * * * * * *
2906 TTTCCAAAAATTCGAACCTTGGAAAAATAGCACCATTTGGTCCAAAACAGTTGGTCCTTTTGTAA
321 TTT-TGAACATTCCATTC-TCG-AAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAA
* ** *
2971 AAAACTTTCAGTCTTT--A--AAAAACTTATTTATGTGAGAGTTGT
382 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* *** * * *
3013 TTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTTTTAATCTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
3078 GGTTCCTTAAAGTATTCAAGACGATCCATTTCGTGGAGTAATTTTTCGAACATTCGATTCTTGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * *
3143 AAATTGCATCATTTGGTCTAAATAATCTGTTATTTTGTAAACAACTTTTGGACTTTGGATTAAAA
130 AAATCGCATCATTTGGTCCAAATAAT-TG-TATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * *
3208 ACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTAGTCGAACTTCCAAAC-TTGTCAAACTT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACTT
* * * * * *
3272 TTAT-TAGTTCTTTT-TAACTTTGGTTCTTTAAAGTGTTCAAGGCAATCCATTCCTTCTAGCAAT
257 TT-TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * *
3335 TTTTCGAACATTCCATGCTCGAGAAATCACATCATTAGGTCCGAATAGTTTGTCATTTTGTAAAC
321 TTTT-GAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* * *
3400 AACTTTTGGTCTTTGAATTAAAGACTTATTTACGTGAAAATTGT
384 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * *
3444 CTCTCTCCTGGTTCATGGCCGAAC------A-TGTCAAACTTTTAT-AAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTTTCAAACTTTT-TCGAGTTCTTTTATAACTTC
* * * * * * * *
3501 GGTTCTTTAAAGTATTCAAGGCAATCCATTCCTTCAAGTC-ATTTTCCGAGCATTCCATACTCGA
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTTCGAACATTCCATTCTCGG
* * * * * ** *
3565 GAAATCGCATCATTTTGACCAAGTAGTTTGTTATTTTGTAAACAACTATTACTTTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATA-ATTG-TATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * *
3630 AACTTATTTAAGTGAGAATGGTTTCTCTCTTGGTTGTTGGTCGAACTTCC-AAGCCTTCCAAACT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAA-CTTTGCAAACT
* * *** * *
3694 TTTTCGAGTTCTATTATAGCTTCATTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAAC-AT
256 TTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
3758 TTNATG--C--T-CA-----GGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
321 TT-TTGAACATTCCATTCTCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
** * * *
3813 ACTTTTGGTCTCAGAATTAAAAACTTATTTACGTAAGAATGGT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* ** * * * *
3856 TTCTCCCTTGGTTCTTTACTGAACTTTTGAACTTGCCAAACTTTTACGAGTTATTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * *
3921 AGTTCCTTAAAATATTCAAGACAATCCATTCTTTCGAGCAATTTTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * * * *
3986 AAAGT-GCATAATTT-TTCCCAAAT-ATTTTATCCTTTTGTAAATAACTTTCGGTGTTTGAATTA
130 AAA-TCGCATCATTTGGT-CCAAATAATTGTA---TTTTGTAAACAACTTTTGGTCTTTGAATTA
*
4048 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGAAC-TTGTCAAA
190 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAA
* * * * *
4112 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAGGATGATCGATTCCTTCTAGCA
254 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * *
4177 ATTTTCCAAACATTCCATTCTCGAGAAATTGCATCATTTGGTCCAAATAGTTAGTTC-TTTTGTA
319 ATTTT-TGAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTG-TCATTTTGTA
** * **
4241 TAA-AACTTTCAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTAA
381 -AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * ** * * * *
4288 TTATCTTTTGGTTCTAGGCCGAACTTTCAAACGTCTCAAACATTTTCGAGTCCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
4353 GGTTCCTTAAAGTATTCAATACGATCCATTTCTTCGAACAAATTTTC--A-A----A--CTCGAG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * ** * *
4409 AAATCGCATCATTTGATCCAAAAAATCTGTCATTTTACAAACAACTATTGGTCTTTGGATTAAAA
130 AAATCGCATCATTTGGTCCAAATAAT-TGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
4474 ATTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAAC-TTGTTAAACTT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACTT
* * *
4538 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCGATTCTTTCGAGCAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * *
4603 TTCGAAACTTTCTATTCTTGGGAAATCACATCATTTGATCCAAATAG--T-T-A----GT---C-
322 TTTG-AACATTCCATTC-TCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* *
4656 -CTTTT-G----T--A--AAAAACTTATTTACGTGAGAATTAT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * * * *
4689 TTC-CGTCTTGGATCTAGACCAAACTTTCGAGCTTTACACACTTTTTCGAATTCTTTTATAACTT
1 TTCTC-TCTTGGTTCTTGGCCGAACTTTTGAACTTT-CAAACTTTTTCGAGTTCTTTTATAACTT
* ** ** * * * ** **
4753 TGACTCCTTAAAGTATTCAAGACGAAACATTTCTTCAAACAATTTTTCGAACATT-TTTTCTCAA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
* *
4817 GAAATCGCATCATTTGGTCCAAATAGTCAGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATAAT-TGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
** * *
4882 ATTTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACATT-CGAAC-TCGTCAAAC
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTCCGAACTTTG-CAAAC
* * * * *
4945 TTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAATGATCAATTCCTTC-ATGAA
255 TTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCA
** * * *
5009 ATTTTCCAAACATTCTATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCATTTTGTAA
319 ATTTT-TGAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA
* * * * *
5074 AAAACTTTTGGTCTTTCAATTAAAAACCTATTTACGTGAGAATTAT
382 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * *
5120 TTCTCTCTTGGTTCTAGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * ** * *
5185 GGTTCCTTAAAGTATTCAAGAAGATCCATTTCTTCGAATAA-TTTTCGAACATTCCGTCCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * * *
5249 AAATCGCATCATTTGGTCCAAAT-A----A-TCTGT-CACAACTTTTGGTCTTTGGATTAAATAT
130 AAATCGCATCATTTGGTCCAAATAATTGTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * *
5307 TTATTTTTGAGAGAATTGTTTCTCTCTTGTTTCTTGACCAAACTTCTGAAC-TTGTCAAACTTTT
195 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACTTTT
* * * * * * * *
5371 TAGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCATGACTATCAATTCCTTTGAGCAAGTAT
259 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTT
* * * *
5436 CTGAACATTCCATGCTCGGTAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
323 TTGAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
* ** *
5501 TTTTGGTCTTGGGAA-TAAAATTTTA-TTCTGTGAGAATTGT
387 TTTTGGTCTT-TGAATTAAAAACTTATTTATGTGAGAATTGT
* ** * * *
5541 TTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTTTCAAACTTTGTCGAGTACTTTTATATCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAAC-TTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * *
5606 AGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGATCAATTTTCCGAACATTTCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * * *
5671 AAATCACATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAA
130 AAATCGCATCATTTGGTCCAAATAATT-GT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * * * * * * * *
5736 ACTTATTTACATAAGAATTATTCCACTCGTGGTTCTAGGCCAAACTT----ACTTTGTAAACTTT
193 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTTT
* * * * * *
5797 TTCGAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAGGATGATCCATTTCTTCGAACAATTT
258 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * *
5862 TTCGAACATT-TAGTTCTCGGGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACA
323 TT-GAACATTCCA-TTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* *
5926 ACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAATTGT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * *
5969 TTCTCT-TT-GTTCTTGGCAGAACTTCTT-AACTTGTAAAACTTTTTCGAGTACTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGCCGAACTT-TTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTT
* * * * **
6031 CGGTTCCTTAATGTATTCAAGACAATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTTTCTA
64 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
* * * * *
6096 GACATCTCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAGAACTTTCGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATAATT-GT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * * *
6161 AACTTAGTTACGTGATAATTATTTCACTCTTGGTT-TTAGGCCGAACTTCCAAACTTTGAAAACT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCCGAACTTCCGAACTTTGCAAACT
* * * * **
6225 TTTTCGAGCTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCGTCGAATAAT
256 TTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
6290 TTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAC
321 TTTT-GAACATTCCATTCTC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
*
6355 AACTTTTGGT-TCTTGAATTAAAAATTTATTTATGTGAGAATTG-
384 AACTTTTGGTCT-TTGAATTAAAAACTTATTTATGTGAGAATTGT
** * * * *
6398 TT-TCTCTTGGGACTTGGCCGAGCTTCTGAACTTGTCAAACTTTTTCGAGTACGTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* ** * * * *
6462 GGTTCCATAAAGTATTCAAGACGATTAATGCCTTC-ACGTAATTTTTCGAACATTTCATTCTTGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATTCTCGG
* * * **
6526 GAAATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATAA-TTGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * *
6590 AACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGCGAAGTT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTT
* * * * *
6655 TTTCGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCCAACAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * ** ** ** * * * *
6720 TTTCGAACATTCCGTACTTAAGAAATTTCATCATCAGGTCCAAATAATCTGTTATTTTGGAAACA
322 TTT-GAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * **
6785 ACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAACGT
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * * *
6828 TTCTGTCTTGGTTCTTGGCCGAACTTCTGAACTAGTCAAACTGTTTCAAGTTCTCTTATAGCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
6893 GGTTCCTTATAGTATTCAAGGCGATCGATTCCTACGAGCAA-TTCTCTGAGCATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGG
* *
6957 GAAATCGCATCACTTGGTCCAAAT-A--G---TTAGT---C--CTTTT-G----T-AA--AAAAA
129 GAAATCGCATCATTTGGTCCAAATAATTGTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * * *
7003 -TTATTTATGTGAGAATTATTTCTCTCTTCGTTCTAGGCCAAACTTACGAACTTTACAAACTTTT
194 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTTTT
* * * * *
7067 TTGAGTTTTTTTTATAACTTTGGTTCCTTCAAA-TATTTAAGACGATCCATTTCTTCGAACAATT
259 TCGAG-TTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
7131 TTTCGAACATTTCATTCTCGAGAAATCGTATCATTCGGTACAAATAATCTGTC-TTTCTGTAAAC
322 TTT-GAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTT-TGTAAAC
* **
7195 AACTTTTGGTCTTTGGATTAAAATTTTATTTATGTGAGAATTGT
384 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * *
7239 TTCTCTCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTCTCAAGTACTTTTATATCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
** ** *
7304 GGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* *
7369 AAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAGAA-AACTTTCGGTCTTTGAATTAAA
130 AAATCGCATCATTTGGTCCAAATAATT-GT-ATTTTGTA-AACAACTTTTGGTCTTTGAATTAAA
* * * * * * * *
7433 AACTTATTTACGTAAGAATTATTTCACTCGTGGTTCTAGGCTGAACTT----ACTTTGTAAACTT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTT
* * * * * * *
7494 TTTCGAGTTCTTTTCTAACTTTTGCTCCATAAAGTATTCAAGATGATCCATTTCTTCGAACAATT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * *
7559 TTTCGAACA-TCCGTTCTCGAGAAATTGCAGCATTTGGTCTAAATAATCTGTCAATTT-TAAACA
322 TTT-GAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * *
7622 ACTTTTGGTCTTTGGATTAAGAATTTATTTATGTGAGAATTG-
385 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * ** * * *
7664 TT-TCTCTTGGTTCATGGCCAAACTTCCGAATTTGTCAAACTTTTTCGAGTACCTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* *
7728 GGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
* * * * * *
7793 AAATAGCATCATTTGGTCCAAATAATTATTCCTTTTGTAAAAAAACTTTCGATCTTTGAATTAAA
130 AAATCGCATCATTTGGTCCAAATAATT-GT-ATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * * *
7858 AACTTACTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGAAAACTT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTT
* * * * *
7923 TTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCATTTCTTTGAACAAAT
257 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AAT
* * * * * * *
7988 TTTCGAACATTCCGTTCTTGGGAAATCGCATCATTTGTTCCAAATAATGTGTC-TGTTTGTAAAC
321 TTTTGAACATTCCATTC-TCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCAT-TTTGTAAAC
* ** **
8052 AACTTTTGGTTTTTCG-ATTAAAATTTTATTTATGTGAGAAACGT
384 AACTTTTGGTCTTT-GAATTAAAAACTTATTTATGTGAGAATTGT
* * ** * *
8096 TTCTCTCTTGGTTCTTGGTCTAACTTTTGAACCTGACAAACTTTTTCAAGTTCTTTTATTACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAA-CTTTCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * *
8161 GGTTCCTTAAAGTATTCAAGACGAT-TAGTTCTTTCGAGCAATTTTCCGAGCATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGG
*
8225 GAAATCGCATCATTTGGTCCAAAT-A--G---TTAGT---C--CTTTT-G----T--A--AAAAA
129 GAAATCGCATCATTTGGTCCAAATAATTGTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * * *
8270 --TATTTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTACAAACTTT
194 CTTA-TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTTT
* * * * * * *
8333 TTCGAGTTCTTTTATAGCTTTGTTTCCTTAAAGTATTCATGACGATACATTTCTTCAAACAATTT
258 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
*** ** * ***
8398 TTCGAACATTTTGTTCTTAAGAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAACAA
323 TT-GAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
* *
8463 CTTTTGGTCTTTGAATTAAAAATTTATTTATATGAGAATTGT
386 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
*** *
8505 TTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTTCGAGATCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * *
8570 GGTTCCTTAAAGTATTCAAAATGATCGATTCCTTC-ATGAAATTTTCCAAACATTCCATTCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATTCTCGG
* * * * *
8634 GAAATCTCATCATTTGGTCCAAATAGTTAGTCGTTTTGTAAAAAACTTCTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATAATT-GT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * *
8699 AACCTATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCTGAACTTCCGAAC-TTGTCAAACT
192 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTG-CAAACT
* * *
8763 TTTTCGAGTTTTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAAA
256 TTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AA
* * * *
8828 TTTTTGAACATTCC-GTCATCGGGAAATCGCATCATTTGGTCCAAATA-------A-TCTGT-CA
320 TTTTTGAACATTCCATTC-TC-GAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
* * ** *
8883 CAACTTTTTGTCTTTGGATTAAAATTTTATTTTTGTGAGAATTGT
383 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* ** **
8928 TTCTCTCTTGTTTCTTGATCGAACTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
* * * * * * * *
8993 GGTTCCTTAAAGTATTCATGACTATCGATTTCTTCGAGTAA-GTATCTGAACATTCCATGCTCGG
65 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGG
* * * *
9057 TAAATCGCATGATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCCAAATA-ATTGT-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * ***
9122 AACTTATTTACGTGAGAATGGTTTCTC-CATTGGTTCTT-GACTAAGCTTTC-AAAAGTGTCAAA
192 AACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGCCGAA-CTTCCGAACTTTG-CAAA
* * * * * * *
9184 CTTTTACAAGTTATTTTATAA-TTTCAGTTCCCTAAAGTATTCAAGACAATCAATTCCTT----C
254 CTTTTTCGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
9244 -------GAACATTCCGTTCTCAAGAAATCGCATTATTAGGTCCAAATAATCTGTTATTTTGTAA
318 AATTTTTGAACATTCCATTCTCGA-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA
* * * **
9302 AGAACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAACGT
382 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
* * * * * ** * * * *
9348 TTTTGTCTTCGTTCTTGGTCAAACTTCCGAACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTC
1 TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACT-TTCAAACTTTTTCGAGTTCTTTTATAACTTC
*
9413 TGTTC
65 GGTTC
9418 TCGGGAAATC
Statistics
Matches: 7483, Mismatches: 1206, Indels: 599
0.81 0.13 0.06
Matches are distributed among these distances:
400 3 0.00
401 112 0.01
403 2 0.00
404 1 0.00
405 1 0.00
408 15 0.00
409 529 0.07
410 72 0.01
411 306 0.04
412 106 0.01
413 5 0.00
414 2 0.00
415 3 0.00
417 8 0.00
418 7 0.00
419 23 0.00
420 320 0.04
421 112 0.01
422 269 0.04
423 702 0.09
424 211 0.03
425 82 0.01
426 381 0.05
427 532 0.07
428 404 0.05
429 566 0.08
430 796 0.11
431 759 0.10
432 642 0.09
433 510 0.07
434 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (427 bp):
TTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTTTCAAACTTTTTCGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGA
AATCGCATCATTTGGTCCAAATAATTGTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
TATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTGCAAACTTTTTC
GAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTG
AACATTCCATTCTCGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGT
Found at i:8424 original size:193 final size:193
Alignment explanation
Indices: 8095--8459 Score: 464
Period size: 193 Copynumber: 1.9 Consensus size: 193
8085 GTGAGAAACG
* * * *
8095 TTTCTCTCTTGGTTCTTGGTCTAACTTTTGAACCTGACAAACTTTTTCAAGTTCTTTTATTACTT
1 TTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACCTGACAAACTTTTTCAAGTTCTTTTATTACTT
* * * * **
8160 CGGTTCCTTAAAGTATTCAAGACGATTAGTTCTTTCGAGCAATTTTCCGAGCATTCCATTCTCGG
66 CGGTTCCTTAAAGTATTCAAGACGATCAGTTCTTTCAAACAATTTTCCGAACATTCCATTCTCAA
* ** *
8225 GAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAATATTTTACGTGAGAATTA
131 GAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAAAAATATTTTACGTGAGAATTA
* * *
8288 TTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTACAAACTTTTTCGAGTTCTTTTA-TAGCT
1 TTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACCTGACAAACTTTTTCAAGTTCTTTTATTA-CT
* * * * * *** *
8352 TTGTTTCCTTAAAGTATTCATGACGATACATTTC-TTCAAACAATTTTTCGAACATTTTGTTCTT
65 TCGGTTCCTTAAAGTATTCAAGACGAT-CAGTTCTTTCAAACAATTTTCCGAACATTCCATTCTC
8416 AAGAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAA
129 AAGAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAA
8460 CAACTTTTGG
Statistics
Matches: 144, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
192 2 0.01
193 138 0.96
194 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (193 bp):
TTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACCTGACAAACTTTTTCAAGTTCTTTTATTACTT
CGGTTCCTTAAAGTATTCAAGACGATCAGTTCTTTCAAACAATTTTCCGAACATTCCATTCTCAA
GAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAAAAATATTTTACGTGAGAATTA
Found at i:8626 original size:409 final size:414
Alignment explanation
Indices: 4894--9417 Score: 4028
Period size: 429 Copynumber: 10.7 Consensus size: 414
4884 TTTATTTATA
* * * * *
4894 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACATT-CGAACTCGT-CAAACTTTTTCGAGTTC
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAAC-TTCCGAACT-TTACAAACTTTTTCGAGTTC
* * * * * * *
4957 TTTTATAACTTCGGTTCCTTAAAGTATTCAAAATGATCAATTCCTTC-ATGA-AATTTTCCAAAC
64 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA--ACAATTTTTCGAAC
** * * *
5020 ATTCTATTCTCGGGAAATCGCATCATTTGGTCCAAATAGT-TAGTCATTTTGTAAAAAACTTTTG
127 ATTCCGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTC-TTTTGTAAACAACTTTTG
** ** * * * *
5084 GTCTTTCAATTAAAAACCTATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTTCG
190 GTCTTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCG
* * * *
5149 AACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCCAT
255 AACTTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGAT
* ** * * *
5214 TTCTTCGAATAATTTT-CGAACATTCCGTCCTCGGGAAATCGCATCATTTGGTCCAAATAATCT-
320 TCCTTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGT-TA
*** * * ** **
5277 GTCACAACTTTTGGTCTTTGGATTAAATATTTATTTTTG
384 GT--C--CTTTT-G---TAAAAATAATTAACTATTTACG
* * * * * * ** * *
5316 AGAGAATTGTTTCTCTCTTGTTTCTTGACCAAACTTCTGAACTTGT-CAAACTTTTTAGAGTTCT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTT-TACAAACTTTTTCGAGTTCT
* * * * * * * * * *
5380 TTTATAACTTCGGTTACTTAAAGTATTCATGACTATCAATTCCTTTGAGCAA-GTATCTGAACAT
65 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTC-GAACAT
* * * * *
5444 TCCATGCTCG-GTAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
129 TCCGTTCTCGAG-AAATCGCATCATTTGGTCCAAATAATCTGTC-TTTTGTAAACAACTTTTGGT
* * * * *
5508 CTTGGGAATAAAATTTTA-TTCTGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAA
192 CTTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAA
* * * * * * *
5572 CTTTTCAAACTTTGTCGAGTACTTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCAATTC
257 CTTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTC
* * * *
5637 CTTCGATCAATTTTCCGAACATTTCATTCTCGGGAAATCACATCATTTGGTCCAAATAATTAGTC
322 CTTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTC
*
5702 CTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAAACTTATTTACA
387 CTTTTGT-AAAAA-----------T-AATT---AAC-TATTTACG
* * * ** **
5747 TAAGAATTATTCCACTCGTGGTTCTAGGCCAAACTT----ACTTTGTAAACTTTTTCGAGTTCTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAGTTCTT
* * * * *
5808 TTATAACTTTTGCTCCTTAAAGTATTCAGGATGATCCATTTCTTCGAACAATTTTTCGAACATTT
66 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTC
* * *
5873 AGTTCTCGGGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTT
131 CGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTC-TTTTGTAAACAACTTTTGGTCTT
* **
5938 TGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCT-TT-GTTCTTGGCAGAACTTCTTAACTT
195 TGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTT
* * * * * *
6001 GTAAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAATGTATTCAAGACAATCAATTCCTT
260 GTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTT
* * ** * * *
6066 CGAGCAATTTTTCGAACATTCCATTTTCTAGACATCTCATCATTTGGTCCAAATAATTAGTCCTT
325 CGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTT
*
6131 TTGTAAAGAACTTTCGGTCTTTGAATTAAAAACTTAGTTACG
390 TTGTAAA-AA-----------T-AATT---AAC-TATTTACG
* * * * *
6173 TGATAATTATTTCACTCTTGGTTTTAGGCCGAACTTCCAAACTTTGA-AAACTTTTTCGAGCTCT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTT-ACAAACTTTTTCGAGTTCT
* * *
6237 TTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCGTCGAATAATTTTTCGAACATT
65 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
* *
6302 CCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT-T
130 CCGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTC-TTTTGTAAACAACTTTTGGTCT
* ** * *
6366 CTTGAATTAAAAATTTATTTATGTGAGAATTG-TT-TCTCTTGGGACTTGGCCGAGCTTCTGAAC
194 -TTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAAC
* * * * ** *
6429 TTGTCAAACTTTTTCGAGTACGTTTATAACTTCGGTTCCATAAAGTATTCAAGACGATTAATGCC
258 TTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCC
* * * * **
6494 TTC-ACGTAATTTTTCGAACATTTCATTCTTGGGAAATCGCATCA-TTGGTCCAAATAACTAGTC
323 TTCGA-GCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTC
6557 CTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAACTTATTTACG
387 CTTTTGT--AAAA-----A-----T-AATT---AAC-TATTTACG
* * * * * * *
6602 TGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGCGAAGTTTTTCGTGTTCTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAGTTCTT
* *
6667 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCCAACAATTTTTCGAACATTC
66 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTC
* ** ** ** * *
6732 CGTACTTAAGAAATTTCATCATCAGGTCCAAATAATCTGTTATTTTGGAAACAACTTTTGGTCTT
131 CGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTG-TCTTTTGTAAACAACTTTTGGTCTT
** * * *
6797 TGGATTAAAAATTTATTTATGTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCTGAACTA
195 TGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTT
* * * * * *
6862 GTCAAACTGTTTCAAGTTCTCTTATAGCTTCGGTTCCTTATAGTATTCAAGGCGATCGATTCCTA
260 GTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTT
* * * *
6927 CGAGCAATTCTCTGAGCATTCCATTCTCGGGAAATCGCATCACTTGGTCCAAATAGTTAGTCCTT
325 CGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTT
*
6992 TTGTAAAAA-AA-T---TATTTATG
390 TTGTAAAAATAATTAACTATTTACG
* * ** * * *
7012 TGAGAATTATTTCTCTCTTCGTTCTAGGCCAAACTTACGAACTTTACAAACTTTTTTGAGTTTTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAG-TTCT
*
7077 TTTATAACTTTGGTTCCTTCAAA-TATTTAAGACGATCCATTTCTTCGAACAATTTTTCGAACAT
65 TTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACAT
* * * * *
7141 TTCATTCTCGAGAAATCGTATCATTCGGTACAAATAATCTGTCTTTCTGTAAACAACTTTTGGTC
129 TCCGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCTTT-TGTAAACAACTTTTGGTC
* * *
7206 TTTGGATTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCTGAAC
193 TTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAAC
* * * ** *
7271 TTGTCAAACTTTCTCAAGTACTTTTATATCTTCGGTTCCTTAAAGTATTCAAGATTATAGATTCC
258 TTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCC
** *
7336 TTCGAGCAATTTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCC
323 TTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCC
7401 TTTTGTAGAAAACTTTCGGTCTTTGAATTAAAAACTTATTTACG
388 TTTTGTA-AAAA-----------T-AATT---AAC-TATTTACG
* * **
7445 TAAGAATTATTTCACTCGTGGTTCTAGGCTGAACTT----ACTTTGTAAACTTTTTCGAGTTCTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAGTTCTT
* * * * *
7506 TTCTAACTTTTGCTCCATAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACA-TC
66 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTC
* * * *
7570 CGTTCTCGAGAAATTGCAGCATTTGGTCTAAATAATCTGTCAATTT-TAAACAACTTTTGGTCTT
131 CGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTC-TTTTGTAAACAACTTTTGGTCTT
* * * *
7634 TGGATTAAGAATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCATGGCCAAACTTCCGAATTT
195 TGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTT
* * * *
7697 GTCAAACTTTTTCGAGTACCTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAATTCCTT
260 GTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTT
* * * * *
7762 CGAGCAATTTTTCGAACATTCCATTCTTGGGAAATAGCATCATTTGGTCCAAATAATTATTCCTT
325 CGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTT
*
7827 TTGTAAAAAAACTTTCGATCTTTGAATTAAAAACTTACTTACG
390 TTGT---AAAA------A----T-AATT---AAC-TATTTACG
* * *
7870 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGA-AAACTTTTTTGAGTTCT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTT-ACAAACTTTTTCGAGTTCT
* * *
7934 TTTATAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCATTTCTTTGAACAAATTTTCGAACATT
65 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
* * * * *
7999 CCGTTCTTGGGAAATCGCATCATTTGTTCCAAATAATGTGTCTGTTTGTAAACAACTTTTGGTTT
130 CCGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCT-TTTGTAAACAACTTTTGGTCT
* * ** * * ** *
8064 TTCGATTAAAATTTTATTTATGTGAGAAACGTTTCTCTCTTGGTTCTTGGTCTAACTTTTGAACC
194 TTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACT
* * * *
8129 TGACAAACTTTTTCAAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAAGACGAT-TAGTTCT
259 TGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGA-TTCC
*
8193 TTCGAGCAATTTTCCGAGCATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCC
323 TTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCC
8258 TTTTGT-AAAA-AA-T-A-T-TTTACG
388 TTTTGTAAAAATAATTAACTATTTACG
* ** *
8279 TGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTACAAACTTTTTCGAGTTCTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAGTTCTT
* * * * * *
8344 TTATAGCTTTGTTTCCTTAAAGTATTCATGACGATACATTTCTTCAAACAATTTTTCGAACATTT
66 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTC
* ** * ** *
8409 TGTTCTTAAGAAATCGCATAATTTGGTCCAAATAGCCAGTCATTTTGTAAACAACTTTTGGTCTT
131 CGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTC-TTTTGTAAACAACTTTTGGTCTT
* * *
8474 TGAATTAAAAATTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTT
195 TGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTT
* * * *
8539 GTCAAACTTTTTCGAGATCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAATGATCGATTCCTT
260 GTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTT
* * * *
8604 C-ATGAAATTTTCCAAACATTCCATTCTCGGGAAATCTCATCATTTGGTCCAAATAGTTAGTCGT
325 CGA-GCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCCT
8668 TTTGTAAAAAACTTCTGGTCTTTGAATTAAAAACCTATTTACG
389 TTTGT-AAAAA-----------T-AATT---AA-CTATTTACG
* *
8711 TGAGAATTATTTCTCTCTTGGTTCTAGGCTGAACTTCCGAACTTGT-CAAACTTTTTCGAGTTTT
1 TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTT-TACAAACTTTTTCGAGTTCT
8775 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAAATTTTT-GAACAT
65 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAAC-AATTTTTCGAACAT
* *
8839 TCCG-TCATCGGGAAATCGCATCATTTGGTCCAAATAATCTGTC--------ACAACTTTTTGTC
129 TCCGTTC-TCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCTTTTGTAAACAACTTTTGGTC
* * * **
8895 TTTGGATTAAAATTTTATTTTTGTGAGAATTGTTTCTCTCTTGTTTCTTGATCGAACTTCCGAAC
193 TTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAAC
* * * *
8960 TTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATGACTATCGATTTC
258 TTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCC
* * * * * * * * *
9025 TTCGAGTAAGTATCTGAACATTCCATGCTCGGTAAATCGCATGATTTGGTCCAAATAGTTTGTCA
323 TTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCC
9090 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACG
388 TTTTGTAAA-AA-----------T-AATT---AAC-TATTTACG
** * * * ** * * * *
9134 TGAGAATGGTTTCTC-CATTGGTTCTTGACT-AAGCTTTCAAAAGTGT-CAAACTTTTACAAGTT
1 TGAGAATTATTTCACTC-TTGGTTCTAGGCTGAA-C-TTCCGAACTTTACAAACTTTTTCGAGTT
* * * * *
9196 ATTTTATAA-TTTCAGTTCCCTAAAGTATTCAAGACAAT-CA---ATTC---C-----TTCGAAC
63 CTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAAC
* * * * *
9248 ATTCCGTTCTCAAGAAATCGCATTATTAGGTCCAAATAATCTGTTATTTTGTAAAGAACTTTTGG
127 ATTCCGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTG-TCTTTTGTAAACAACTTTTGG
** * * * * *
9313 TCTTTGGATTAAAAATTTATTTATGTGAGAAACGTTTTTGTCTTCGTTCTTGGTCAAACTTCCGA
191 TCTTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGA
* * * *
9378 ACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTCTGTTC
256 ACTTGTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTC
9418 TCGGGAAATC
Statistics
Matches: 3456, Mismatches: 497, Indels: 300
0.81 0.12 0.07
Matches are distributed among these distances:
408 2 0.00
409 340 0.10
410 63 0.02
411 331 0.10
412 11 0.00
414 1 0.00
415 1 0.00
416 2 0.00
417 4 0.00
418 7 0.00
419 3 0.00
420 100 0.03
421 114 0.03
422 222 0.06
423 289 0.08
424 157 0.05
425 66 0.02
426 252 0.07
427 181 0.05
428 85 0.02
429 344 0.10
430 326 0.09
431 191 0.06
432 175 0.05
433 188 0.05
435 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (414 bp):
TGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCGAACTTTACAAACTTTTTCGAGTTCTT
TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTC
CGTTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCTTTTGTAAACAACTTTTGGTCTTT
GGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTG
TCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC
GAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTT
TGTAAAAATAATTAACTATTTACG
Found at i:9847 original size:215 final size:216
Alignment explanation
Indices: 9462--11158 Score: 1793
Period size: 215 Copynumber: 7.9 Consensus size: 216
9452 TCCTTTTGTA
* * * *
9462 AAAAACTTATTTATGTGAGAATTATTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTT-TACAA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGT-CAA
* * * * * * *
9526 ACTTTTTCGAGTTTTTTTTATAGCTTTGGTTCCTTAACGTATTCAAGACGATCCATTTCATCGAA
65 ACTTTTTCGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAA
* * * ** *
9591 CAATTTTTCGAACATTTCGTTCTCCGGAAATCACATCATTTGGTACAAATAATCTGTCATTTTGT
129 CAATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCTGTCATTTTGT
*
9656 AAACAACTTTTAGTCTTTGGATT
194 AAACAACTTTTGGTCTTTGGATT
* * *
9679 -AAAATTTAATTT-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAA
1 AAAAATTT-ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGTCAA
* * * ** * * *
9742 ACTTTTTCGAGTACTTTTATATCTTCGATTCCTTAAAGTATTCAAGATTATAGATTCCTTTGAGC
65 ACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAAC
* *
9807 AATTTTTCGAGCATTCCATTCTCGGGAAATC-TATTCATTTGGTCCAAATAAT-TAGTCCTTTTG
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGTA-TCATTTGGTCCAAATAATCT-GTCATTTTG
* *
9870 TAGAA-AACTTTCGGTCTTTGAATT
193 TA-AACAACTTTTGGTCTTTGGATT
* * * * * * *
9894 AAAAACTTATTTACGTAAGAATTATTTCACTCGTGGTTCTAGGCCGTACTT----ACTTTGT-AA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAAC-TTGTCAA
** * * * * * *
9954 ACTTTTTCGAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAATATGATCCATTTCTTCAAAC
65 ACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAAC
* * * * * *
10019 AATTTTTCGAAAATTCCATTCTCGGGAAATTGCAGCATTTGGTCTAAACAATCTGTCAATTTT-T
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCTGTC-ATTTTGT
*
10083 AAACAACTTTTGGTCTTTCGATT
194 AAACAACTTTTGGTCTTTGGATT
* * * *
10106 AAGAATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGTCAAA
* *
10169 CTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-CAATTCCTTCGAGC
66 CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGAAC
* ** ** *
10233 AATTTTTCGAACATTCCATTTTCTAGAAATC-TCATCATTCAGTCCAAATAAT-TAGTCCTTTTG
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGT-ATCATTTGGTCCAAATAATCT-GTCATTTTG
* * **
10296 TAAA-AACTTTCGGTTTTTAAATT
193 TAAACAACTTTTGGTCTTTGGATT
* * * * * *
10319 AAAAACTTAGTTATGTGATAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTT-TGCAA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGT-CAA
* * * * *
10383 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGACGATCCATTTCGTCGAAC
65 ACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAAC
* * * *
10448 AATTTTTAGAACATTCCATTCTCGGGAAATCGCACCATTTGGTCCAAATAATCTATCATTTTGTA
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCTGTCATTTTGTA
10513 AACAACTTTTGGT-TCTTGGATT
195 AACAACTTTTGGTCT-TTGGATT
* * *
10535 -AAAATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCTGAACTTCAGAACTTGTCAAA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGTCAAA
* * * *
10597 CTTTTTCGAGTACATTTATAACTTCGGTTCCATAAAGTATTCAAGACGAT-CGATTCCTTC-ACG
66 CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGA-A
* * * *
10660 CAATTTTTCGAACATTCCATTCTTGGGAAATCGCATCA-TTGGTCCAAATAA-CGAGTCCTTTTG
129 CAATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATC-TGTCATTTTG
* ** *
10723 TAAAAAACTTTCAGTCTTTGAATT
193 TAAACAACTTTTGGTCTTTGGATT
* * * * *
10747 AAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACTACC-AAGCTT-TGCA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAA-CTTGT-CA
* * * *
10810 AACTTTTTCGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGACGAT-CAATTTCTTCAA
64 AACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGA
* * ** * * * *
10874 ACAATTTTTCGAACATTCCGTACTCAAGAAATCGCATCATTAGTTCCAAATAATCTGTTATTTTG
128 ACAATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCTGTCATTTTG
10939 TAAACAACTTTTGGTCTTTGGATT
193 TAAACAACTTTTGGTCTTTGGATT
* * *
10963 AAAAATTTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAGTCAAA
1 AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGTCAAA
* * * * * *
11028 CTTTTTCAAGTTCTCTTATAGCTTCGGTTCCTTAGAGTATTCAAGACGATAGATTCCTTCGAGCA
66 CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAACA
* * * * *
11093 A-TTCTCTGAGCATTCCATTCTCGGGAAATCGTATCACTTGGTCCAAATAGT-TAGTCCTTTTGT
131 ATTTTTC-GAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCT-GTCATTTTGT
11156 AAA
194 AAA
11159 AATCTTATTT
Statistics
Matches: 1218, Mismatches: 215, Indels: 95
0.80 0.14 0.06
Matches are distributed among these distances:
210 18 0.01
211 5 0.00
212 178 0.15
213 192 0.16
214 118 0.10
215 393 0.32
216 305 0.25
217 9 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTTGTCAAA
CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAACA
ATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATAATCTGTCATTTTGTAA
ACAACTTTTGGTCTTTGGATT
Found at i:10655 original size:428 final size:426
Alignment explanation
Indices: 9462--11398 Score: 2472
Period size: 428 Copynumber: 4.6 Consensus size: 426
9452 TCCTTTTGTA
* * * * *
9462 AAAAACTTATTTATGTGAGAATTATTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTTTACAAA
1 AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
* * * *
9527 CTTTTTCGAGTTTTTTTTATAGCTTTGGTTCCTTAACGTATTCAAGACGATCCATTTCATCGAAC
66 CTTTTTCGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAAC
* * * * *
9592 AATTTTTCGAACATTTCGTTCTCCGGAAATCACATCATTTGGTACAAATAATCTGTCATTTTGTA
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTA
*
9657 AACAACTTTTAGTCTTTGGATTAAAATTTAATTT-TGTGAGAATTGTTTCTCTCTTGGTTCTTGG
195 AACAACTTTTGGTCTTTGGATTAAAATTT-ATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGG
* * *
9721 CTGAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATATCTTCGATTCCTTAAAGTATTCA
257 CCGAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCA
** * *
9786 AGATTATAGATTCCTTTGAGCAATTTTTCGAGCATTCCATTCTCGGGAAATCTATTCATTTGGTC
322 AGACGATAGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCTA-TCA-TTGGTC
9851 CAAATAATTAGTCCTTTTGTAGAAAACTTTCGGTCTTTGAATT
385 CAAATAATTAGTCCTTTTGTA-AAAACTTTCGGTCTTTGAATT
* * * * *
9894 AAAAACTTATTTACGTAAGAATTATTTCACTCGTGGTTCTAGGCCGTACTT----ACTTTGTAAA
1 AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
* * * * *
9955 CTTTTTCGAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAATATGATCCATTTCTTCAAACA
66 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACA
* * * * *
10020 ATTTTTCGAAAATTCCATTCTCGGGAAATTGCAGCATTTGGTCTAAACAATCTGTCAATTTT-TA
131 ATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTC-ATTTTGTA
*
10084 AACAACTTTTGGTCTTTCGATTAAGAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCC
195 AACAACTTTTGGTCTTTGGATTAA-AATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCC
*
10149 AAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
259 GAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* ** *
10214 ACGATCA-ATTCCTTCGAGCAATTTTTCGAACATTCCATTTTCTAGAAATCTCATCATTCAGTCC
324 ACGAT-AGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCT-ATCATT-GGTCC
* *
10278 AAATAATTAGTCCTTTTGTAAAAACTTTCGGTTTTTAAATT
386 AAATAATTAGTCCTTTTGTAAAAACTTTCGGTCTTTGAATT
* *
10319 AAAAACTTAGTTATGTGATAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
1 AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
* *
10384 CTTTTTCGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGACGATCCATTTCGTCGAACA
66 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACA
* * *
10449 ATTTTTAGAACATTCCATTCTCGGGAAATCGCACCATTTGGTCCAAATAATCTATCATTTTGTAA
131 ATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
*
10514 ACAACTTTTGGT-TCTTGGATTAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCTG
196 ACAACTTTTGGTCT-TTGGATTAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCG
* * *
10578 AACTTCAGAACTTGTCAAACTTTTTCGAGTACATTTATAACTTCGGTTCCATAAAGTATTCAAGA
260 AACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * *
10643 CGATCGATTCCTTC-ACGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATCATTGGTCCAA
325 CGATAGATTCCTTCGA-GCAATTTTTCGAACATTCCATTCTCGGGAAATC-TATCATTGGTCCAA
** *
10707 ATAACGAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATT
388 ATAATTAGTCCTTTTGT-AAAAACTTTCGGTCTTTGAATT
* * * * *
10747 AAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACTACCAAGCTTTGCAAA
1 AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
* * *
10812 CTTTTTCGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCAAACA
66 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACA
* * ** * * *
10877 ATTTTTCGAACATTCCGTACTCAAGAAATCGCATCATTAGTTCCAAATAATCTGTTATTTTGTAA
131 ATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
*
10942 ACAACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGC
196 ACAACTTTTGGTCTTTGGATT-AAAATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGC
* * * * * * *
11007 CGAACTTCCGAACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTCGGTTCCTTAGAGTATTCAA
258 CGAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* *
11072 GACGATAGATTCCTTCGAGCAA-TTCTCTGAGCATTCCATTCTCGGGAAATCGTATCACTTGGTC
323 GACGATAGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGGGAAATC-TATCA-TTGGTC
*
11136 CAAATAGTTAGTCCTTTTGT--AAA-------------AA-T
385 CAAATAATTAGTCCTTTTGTAAAAACTTTCGGTCTTTGAATT
* * * * *** *
11162 -----CTTATTTATGTGAGAATTATTTCTCTCTTTGTTCTAGGCCAAATTTTTGAACTTTACAAA
1 AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
* *
11222 CTTTTTCGAGTTTTTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTTCTTCGAAC
66 CTTTTTCGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAAC
* * * *
11287 AATTTTTCG-A-A----ATTCTGGGGAAATCGCATCATTTGGTACAAATAATCTGTCATTATATA
130 AATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTA
*
11346 AACAACTTTTGGTCTTTGGATTAAAATTTTATTTATGTGAGAACTGTTTCTCT
195 AACAACTTTTGGTCTTTGGATTAAAA-TTTATTTATGTGAGAATTGTTTCTCT
11399 CTTGGTTCCT
Statistics
Matches: 1326, Mismatches: 154, Indels: 79
0.85 0.10 0.05
Matches are distributed among these distances:
403 5 0.00
404 6 0.00
405 77 0.06
409 1 0.00
410 58 0.04
411 58 0.04
415 1 0.00
416 2 0.00
425 66 0.05
426 147 0.11
427 146 0.11
428 404 0.30
429 165 0.12
430 6 0.00
431 116 0.09
432 68 0.05
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (426 bp):
AAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAA
CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACA
ATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
ACAACTTTTGGTCTTTGGATTAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGA
ACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
GATAGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCTATCATTGGTCCAAATA
ATTAGTCCTTTTGTAAAAACTTTCGGTCTTTGAATT
Found at i:10759 original size:641 final size:637
Alignment explanation
Indices: 9462--11160 Score: 2024
Period size: 641 Copynumber: 2.6 Consensus size: 637
9452 TCCTTTTGTA
* *
9462 AAAAACTTATTTATGTGAGAATTATTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTTTACAAA
1 AAAAACTTATTTATGTGAGAATT-GTT-TCTCTTGGTTCTAGGCCAAACTT-CGAACTTTACAAA
* * * * *
9527 CTTTTTCGAGTTTTTTTTATAGCTTTGGTTCCTTAACGTATTCAAGACGATCCATTTCATCGAAC
63 CTTTTTCGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAAC
* ** * *
9592 AATTTTTCGAACATTTCGTTCTCCGGAAATCACATCATTTGGTACAAATAATCTGTCATTTTGTA
127 AATTTTTCGAACATTCCGTTCTCAAGAAATCACATCA-TTAGTCCAAATAATCTGTCATTTTGTA
* *
9657 AACAACTTTTAGTCTTTGGATT-AAAATTTAATTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGG
191 AACAACTTTTGGTCTTTGGATTAAAAATTTAATTATGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * *
9721 CTGAACTTCTGAACTTGTCAAACTTTTTCGAGTACTTTTATATCTTCGATTCCTTAAAGTATTCA
256 CCGAACTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
** *
9786 AGATTATAGATTCCTTTGAGCAATTTTTCGAGCATTCCATTCTCGGGAAATC-TATTCATTTGGT
321 AGACGATAGATTCCTTCGAGCAATTTTT-GAGCATTCCATTCTCGGGAAATCGTA-TCATTTGGT
9850 CCAAATAATTAGTCCTTTTGTAGAAAACTTTCGGTCTTTGAATTAAAAACTTATTTACGTAAGAA
384 CCAAATAATTAGTCCTTTTGTA-AAAACTTTCGGTCTTTGAATTAAAAACTTATTTACGTAAGAA
* * * *
9915 TTATTTCACTCGTGGTTCTAGGCCGTACTTACTTTGTAAACTTTTTCGAGTTCTTTTATAACTTT
448 TTATTT-ACTCGTGGTTCTAGGCCGAACTTACTTTGTAAACTTTTTCGAGTACATTTATAACTTC
* * * * *
9980 TGCTCCTTAAAGTATTCAATATGATCCATTTCTTCAAACAATTTTTCGAAAATTCCATTCTCGGG
512 GGCTCCATAAAGTATTCAAGACGATCCATTCCTTCAAACAATTTTTCGAAAATTCCATTCTCGGG
* * * * **
10045 AAATTGCAGCATTTGGTCTAAACAATCTGTCAATTTTTAAACAACTTTTGGTCTTTCGATT
577 AAATCGCAGCATTTGGTCCAAACAATCAGTCAATTTTTAAAAAACTTTCAGTCTTTCGATT
* * *
10106 AAGAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGT-CAAAC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTTCTAGGCCAAACTTC-GAACTT-TACAAAC
* * * *
10170 TTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAA
64 TTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAA
* * * * *
10235 TTTTTCGAACATTCCATTTTCTAGAAATCTCATCATTCAGTCCAAATAAT-TAGTCCTTTTGTAA
129 TTTTTCGAACATTCCGTTCTCAAGAAATCACATCATT-AGTCCAAATAATCT-GTCATTTTGTAA
* * ** * * * * * *
10299 A-AACTTTCGGTTTTTAAATTAAAAACTTAGTTATGTGATAATTATTTCACTCTTGGTTCTAGGC
192 ACAACTTTTGGTCTTTGGATTAAAAATTTAATTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* * *
10363 CGAACTTCCAAACTT-TGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCA
257 CGAACTTCCGAACTTGT-CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
** * * * * * *
10427 AGACGATCCATTTCGTCGAACAATTTTTAGAACATTCCATTCTCGGGAAATCGCACCATTTGGTC
321 AGACGATAGATTCCTTCGAGCAATTTTT-GAGCATTCCATTCTCGGGAAATCGTATCATTTGGTC
* * * * * *
10492 CAAATAATCTA-TCATTTTGTAAACAACTTTTGGT-TCTTGGATT-AAAATTTATTTATGTGAGA
385 CAAATAAT-TAGTCCTTTTGTAAA-AACTTTCGGTCT-TTGAATTAAAAACTTATTTACGTAAGA
* * * *
10554 ATTGTTT-CTCTTGGTTCTTGGCTGAACTTCAGAAC-TTGTCAAACTTTTTCGAGTACATTTATA
447 ATTATTTACTCGTGGTTCTAGGCCGAACTT----ACTTTGT-AAACTTTTTCGAGTACATTTATA
* * ** *
10617 ACTTCGGTTCCATAAAGTATTCAAGACGATCGATTCCTTCACGCAATTTTTCGAACATTCCATTC
507 ACTTCGGCTCCATAAAGTATTCAAGACGATCCATTCCTTCAAACAATTTTTCGAAAATTCCATTC
* * * *
10682 TTGGGAAATCGCATCA-TTGGTCCAAATAA-CGAGTC-CTTTTGTAAAAAACTTTCAGTCTTT-G
572 TCGGGAAATCGCAGCATTTGGTCCAAACAATC-AGTCAATTTT-TAAAAAACTTTCAGTCTTTCG
10743 AATT
635 -ATT
* ** * * *
10747 AAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACTACCAAGCTTTGCAAA
1 AAAAACTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTAGGCCAAACTTCGAA-CTTTACAAA
* *
10812 CTTTTTCGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCAAACA
63 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACA
* * *
10877 ATTTTTCGAACATTCCGTACTCAAGAAATCGCATCATTAGTTCCAAATAATCTGTTATTTTGTAA
128 ATTTTTCGAACATTCCGTTCTCAAGAAATCACATCATTAG-TCCAAATAATCTGTCATTTTGTAA
* *
10942 ACAACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGC
192 ACAACTTTTGGTCTTTGGATTAAAAATTTAATTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* * * * *
11007 CGAACTTCCGAACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTCGGTTCCTTAGAGTATTCAA
257 CGAACTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* *
11072 GACGATAGATTCCTTCGAGCAATTCTCTGAGCATTCCATTCTCGGGAAATCGTATCACTTGGTCC
322 GACGATAGATTCCTTCGAGCAATT-TTTGAGCATTCCATTCTCGGGAAATCGTATCATTTGGTCC
*
11137 AAATAGTTAGTCCTTTTGTAAAAA
386 AAATAATTAGTCCTTTTGTAAAAA
11161 TCTTATTTAT
Statistics
Matches: 886, Mismatches: 141, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
638 18 0.02
640 49 0.06
641 333 0.38
642 139 0.16
643 146 0.16
644 198 0.22
645 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (637 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTTCTAGGCCAAACTTCGAACTTTACAAACTT
TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAATT
TTTCGAACATTCCGTTCTCAAGAAATCACATCATTAGTCCAAATAATCTGTCATTTTGTAAACAA
CTTTTGGTCTTTGGATTAAAAATTTAATTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
CTTCCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
ATAGATTCCTTCGAGCAATTTTTGAGCATTCCATTCTCGGGAAATCGTATCATTTGGTCCAAATA
ATTAGTCCTTTTGTAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTATTTAC
TCGTGGTTCTAGGCCGAACTTACTTTGTAAACTTTTTCGAGTACATTTATAACTTCGGCTCCATA
AAGTATTCAAGACGATCCATTCCTTCAAACAATTTTTCGAAAATTCCATTCTCGGGAAATCGCAG
CATTTGGTCCAAACAATCAGTCAATTTTTAAAAAACTTTCAGTCTTTCGATT
Found at i:11774 original size:216 final size:215
Alignment explanation
Indices: 11402--13210 Score: 2094
Period size: 216 Copynumber: 8.4 Consensus size: 215
11392 TTTCTCTCTT
* * * * *
11402 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGAAAATTTCCAAACATTCCATACTCGAG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
* * * *
11467 AAATCGCATCATTTGGTTCAATTATTTTATCCTTTTGTAAACAACTTTCGGTCTTTGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA-AACTTTCGGTCTTTGAATTAAAA
* *
11532 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCATGGCCGAACTTCTGAACTTGTCAAACTTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
*
11597 TACGAGTTCTTTTATAACTTT
195 TACGAGTTCTTTTATAACTTC
* * * ** *
11618 GGTTCTTTAAAGTACTCAAAATGATTAATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCTAG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
* * * *
11683 AAATCGCATCAATTGGTCCAAATAGTTTTTCCTTTTGTAAGAAACATTCGGTCTTGGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAA-AAACTTTCGGTCTTTGAATTAAAA
* * * * *
11748 ACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCGTAGTCGAACTT-TCGAATTTGTCAAACTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCT-GAACTTGTCAAAC-T
11812 TTTACGAGTTCTTTTATAACTTC
193 TTTACGAGTTCTTTTATAACTTC
* * * ** * * * * *
11835 AGTTTCTTAATGTATTCAAGACAACCCATTCCTTTTAG-AAATTTTCAAAACATTCCATGCTTGG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTC-AAACATTCCATGCTCGA
* * * * * * *
11899 GAAATTGTATCATTTGGTCCAAATAGTTTGTCATTTCGTAAAGAAATTTTGGTCTTTAAATTAAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA-AACTTTCGGTCTTTGAATTAAA
* * *
11964 AACTTATTTACTTG-GAATTGTTTCTCTCTTGGTTCTTGGCTGAACATCTGAACTTGTCAAACTT
129 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTT
*
12028 TTACAAGTTCTTTTATAACTTC
194 TTACGAGTTCTTTTATAACTTC
* * * * * * ** * *
12050 GATTCCTTAAGGTATTCAATACGATCCATTCATTCGAGCAATTTTTTGAACATTCCTTACTCGAG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
** * * * **
12115 AAATCGCATCATTTCATCCAAATAGTTTGTCATTTTGT-AATACTTTTGGTCTTAAAATTAAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAACTTTCGGTCTTTGAATTAAAAA
* * * * * * * * * *
12179 CTTATTTCCATGGGAATGGTTTGTC-CATTGGTTCTTGACTGAACTTCCGAATTTGTCAATCTTT
131 CTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
*
12243 TACGAGTTCTTTTGTAACTTC
195 TACGAGTTCTTTTATAACTTC
** * * * * *
12264 AATTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCAATCATTCTATGCTCGAG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
*
12329 AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAACAACTTTCGGTCTTTGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA-AACTTTCGGTCTTTGAATTAAAA
* * * *
12394 ACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTTGGCCGAACTTTTGAACTTTTCAAACTTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
** *
12459 TTGGAGCTCTTTTATAACTTC
195 TACGAGTTCTTTTATAACTTC
* * * * * *
12480 GGTTCCTTAAAGTATTCATGATGATCGATTCCTTCGAGCAA-TTTTCTAAACATTCCATTCTTGG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTC-AAACATTCCATGCTCGA
* *
12544 GAAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAGACTTTCGGTCTATGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAA-ACTTTCGGTCTTTGAATTAAA
* * * *
12609 AACTTATGTACGTGAGAATTATTTCTCTCTTGGTTCATGGCCGAACTT-TCGAACTTTTCAAACT
129 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCT-GAACTTGTCAAACT
* *
12673 TTTTCGAGTTCTTTTATAACTTT
193 TTTACGAGTTCTTTTATAACTTC
* * * * * *
12696 GGTTCCTTAAAGTGTTCATGATGATCCCTTCCTTCGAGCAAATTTTCGAACATTCCATGCTCGAG
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
* * * *
12761 AAATCACATCATTTGGTCCAAATAATTTGCCCTTTTGTAAAAAAACTTTCGATCTTTGAATTAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGT--AAAAACTTTCGGTCTTTGAATTAAA
* * * *
12826 AACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTAGCCGAACTT-TCAAACTTGTCAAACT
129 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCT-GAACTTGTCAAACT
*
12890 TTTACAAGTTCTTTTATAACTTC
193 TTTACGAGTTCTTTTATAACTTC
* * * *
12913 AGTTCCTTAAAGTATTCAAGATGA-CTCATTCCTACT-AGCAATTTTTCGAACATTCCATGCTCA
1 GGTTCCTTAAAGTATTCAAGATGATC-CATTCCT-TTGAGCAATTTTTCAAACATTCCATGCTCG
* * * ** *
12976 AGAAATCACATCACTTGGTCCAAATAGTTTGTCATTTCATAAAGAACTTTTGGTCTTTGAATTAA
64 AGAAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA-AACTTTCGGTCTTTGAATTAA
** *
13041 AAACTTAAGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACATCTGAACTTGTCAAACT
128 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACT
**
13106 TTTACCTGTTCTTTTATAACTTC
193 TTTACGAGTTCTTTTATAACTTC
* * * *
13129 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTAAACATTTCATGCTC-A
1 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTC-AAACATTCCATGCTCGA
* *
13192 GGAAATTGCATCTTTTGGT
65 -GAAATCGCATCATTTGGT
13211 ATTCAAGAAG
Statistics
Matches: 1349, Mismatches: 218, Indels: 52
0.83 0.13 0.03
Matches are distributed among these distances:
213 32 0.02
214 149 0.11
215 115 0.09
216 728 0.54
217 321 0.24
218 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (215 bp):
GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTCGAG
AAATCGCATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAACTTTCGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTC
Found at i:12908 original size:433 final size:430
Alignment explanation
Indices: 11402--17731 Score: 2333
Period size: 432 Copynumber: 14.4 Consensus size: 430
11392 TTTCTCTCTT
* * * * * *
11402 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGAAAATTTCCAAACATTCCATACTCGAG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * *
11467 AAATCGCATCATTTGGTTCAATTATTTTATCCTTTTGTAAACAACTTTCGGTCTTTGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAA
* *
11532 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCATGGCCGAACTTCTGAACTTGTCAAACTTT
131 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
* * * * * * *
11597 TACGAGTTCTTTTATAACTTTGGTTCTTTAAAGTACTCAAAATGATTAATTCCTTTGAGCAATTT
196 TACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA-TCATTCCTTCGAGCAATTT
* * * * *
11662 TTCAAACATTCCATGCTCTAGAAATCGCATCAATTGGTCCAAATAGTTTTTCCTTTTGTAAGAAA
260 TTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA-AGA
* * * * * * *
11727 CATTCGGTCTTGGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCGTAGTCGAA
324 CTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
11792 CTTTCGAATTTGTCAAACTTTTTACGAGTTCTTTTATAACTTC
389 CTTTCGAATTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTC
* * * * * * *
11835 AGTTTCTTAATGTATTCAAGACAACCCATTCCTTTTAG-AAATTTTCAAAACATTCCATGCTTGG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTC-AAACATTCCATGCTCGA
* * * * * * *
11899 GAAATTGTATCATTTGGTCCAAATAGTTTGTCATTTCGTAAAGAAA-TTTTGGTCTTTAAATTAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAA-AAACTTTCGGTCTTTGAATTAA
* * *
11963 AAACTTATTTACTTG-GAATTGTTTCTCTCTTGGTTCTTGGCTGAACATCTGAACTTGTCAAACT
129 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACT
* * * * *
12027 TTTACAAGTTCTTTTATAACTTCGATTCCTTAAGGTATTCAATACGATCCATTCATTCGAGCAAT
194 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT-CATTCCTTCGAGCAAT
** * * ** *
12092 TTTTTGAACATTCCTTACTCGAGAAATCGCATCATTTCATCCAAATAGTTTGTCATTTTGT-AAT
258 TTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAG
* * * * * * * * * *
12156 ACTTTTGGTCTTAAAATTAAAAACTTATTTCCATGGGAATGGTTTGTC-CATTGGTTCTTGACTG
323 ACTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGCCG
* * *
12220 AACTTCCGAATTTGTCAATCTTTTACGAGTTCTTTTGTAACTTC
387 AACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
** * *
12264 AATTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC-AATTTTCCAATCATTCTATGCTCGA
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTT-CAAACATTCCATGCTCGA
*
12328 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAACAACTTTCGGTCTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* * * *
12393 AACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTTGGCCGAACTTTTGAACTTTTCAAACTT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTT
*** * *
12458 TTTGGAGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCATGATGATCGATTCCTTCGAGCAA-T
195 TTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC-ATTCCTTCGAGCAATT
* * * * *
12522 TTTCTAAACATTCCATTCTTGGGAAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAA
259 TTTC-AAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAA
* *
12587 GACTTTCGGTC-TATGAATTAAAAACTTATGTACGTGAGAATTATTTCTCTCTTGGTTCATGGCC
322 GACTTTCGGTCTTA-GAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
* *
12651 GAACTTTCGAACTTT-TCAAACTTTTTCGAGTTCTTTTATAACTTT
386 GAACTTTCGAA-TTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * * *
12696 GGTTCCTTAAAGTGTTCATGATGATCCCTTCCTTCGAGCAAATTTTCGAACATTCCATGCTCGAG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * *
12761 AAATCACATCATTTGGTCCAAATAATTTGCCCTTTTGTAAAAAAACTTTCGATCTTTGAATTAAA
66 AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGT-AAAAAACTTTCGGTCTTTGAATTAAA
* * * *
12826 AACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTAGCCGAACTT-TCAAACTTGTCAAACT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCT-GAACTTGTCAAACT
* * *
12890 TTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGACTCATTCCTACTAGCAAT
194 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA-TCATTCCTTCGAGCAAT
* * * * **
12955 TTTTCGAACATTCCATGCTCAAGAAATCACATCACTTGGTCCAAATAGTTTGTCATTTCATAAAG
258 TTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAG
* * *
13020 AACTTTTGGTCTTTGAATTAAAAACTTAAGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
323 -ACTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
* * **
13085 AAC-ATCTGAACTTGTCAAACTTTTACCTGTTCTTTTATAACTTC
387 AACTTTC-GAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* *
13129 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCTAAACATTTCATGCTC-A
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTC-AAACATTCCATGCTCGA
* * * * ** * ** * ***
13192 GGAAATTGCATCTTTTGGTATTCAAGAAGATCCAT-TCC-TTCG--AGCAATTTTCTAAACATTC
65 -GAAATCGCATCATTTGG---TCCA-AATAT-TTTGTCCTTTTGTAAAAAACTTTC-GGTC-TT-
** * * * * * *
13253 CATGCACAGGAAATCACATCATTT--G-GACCAAGTTGTTTGTCAT-TTTGTAAATAACTGTTG-
121 --TG-A-ATTAAA-AAC-TTATTTACGTGA-GAA-TTGTTTCTC-TCTTGGT---T--CT-TGGC
* ** * * * * *
13313 -GAA-TT-TTAA-TT-AAAAACTTATTAACATTGGAATTGTTTCTCT--CTT-GGTTCTTGGTCG
171 CGAACTTCTGAACTTGTCAAACTT-TT-ACA----AGTTCTTT-TATAACTTCGGTTCCT--T-A
* * ** * * * * ***
13370 AACT-TCCAA-ACTTTTCAAACTT-TTTCGAG---TTCTTTTATAGC-TT-CA-GTTC--CTTAT
226 AAGTATTCAAGA-TGATC--A-TTCCTTCGAGCAATT-TTTCA-AACATTCCATGCTCGAGAAAT
* * * * * ** * * * * ** *
13424 TGTATTCAATATGATCC-ATTCCTTCGACCAATTTT-T--CGAATATTCCATGCTCGAGTAATT-
285 CGCA-TC-ATTTGGTCCAAATAGTTTG-TC-ATTTTGTAAAGACT-TTCGGT-CT-TAG-AATTA
* * * ** * * * ** **
13484 ACATCATT-TGAAC-CAAGTAATT-TGTC-CT-TTTGTAAACAATT-TTCGGTCTTT-GAA-TT-
342 AAAAC-TTATGTACGTGAG-AATTGTTTCTCTCTTGGT--TC--TTGGCCGAACTTTCGAATTTG
** * * * *
13540 AAAAATTTATTATCATTAGAATTGTTTCTCT--CTT-
401 TCAAACTT-TTA-C----GAGTTCTTT-TATAACTTC
* ** * * ***
13574 -GATTCTTAGCCGAACTTCCAA-ACTTG-TCAAACTT--TTTCGAG-TTCTTTT-ATAACATCGG
1 GGTTTCTTA-AAGTA-TT-CAAGAC--GATC-CA-TTCCTTT-GAGCAAATTTTCA-AACA----
* * * * * * *
13632 TTCCTTAAAGTACTCAAGACAATCG-ATTCCTTCGAG--C-AAT-TTTCTGAACATTCCATGCTC
53 TTCC----A-TGCTCGAGA-AATCGCA-TCATTTG-GTCCAAATATTT-TG-TCCTT--TTG-T-
* * ** * * * * * * * * ** * *
13692 GAGAAA-TAAC-ATCATTT-AGTCCAAATAGTT-TGTCCTTTTGTA-AAAAGCTTTCTATC---A
104 AAAAAACTTTCGGTC-TTTGAAT-TAAAAACTTATTTAC--GTG-AGAATTG-TTTCTCTCTTGG
*** * * ** * * *
13749 TT-TTGTAAAGTACTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATT-ATTTCT--CTT
163 TTCTTG-GCCGAACTTCTGAAC-TT-G--T-CAAAC-T-TTTACA--AG--TTCTTTTATAACTT
* ** ** * * *
13810 -GGTT-CTTAGCCGAACT-TTCGAACTTG-TCAATCTTTTTCGAG---TTCTTTTATAAC-TGCA
216 CGGTTCCTTA----AAGTATTC-AAGATGATC-AT-TCCTTCGAGCAATT-TTTCA-AACATTCC
* ** * * * *** * * * *
13867 ATTACTTAAAGTATTCAAGACGACCAGTTCCTTCTAGCAAT-TTTTCGAAAATTCCATGCTTCGA
272 A-TGC-TCGAGAAATC--G-C-ATCA-TTTGGTCCA--AATAGTTT-G-----T-CAT--TTTGT
* *
13931 AAATCGCATCATTT-GGTCCAAATATTTTGTCATTTCGTAAAGAACTTTTGGTAATTTATGTACG
319 AAA--G-A-C-TTTCGGT-C------TTAG--A-AT--TAAA-AAC----------TTATGTACG
* * * ** * **
13995 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAAC-ATCTGAACTTACCAAACATTTACTTGTTCT
356 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAATTTGTCAAACTTTTACGAGTTCT
*
14059 TTTATAACTTT
420 TTTATAACTTC
* * * ** * ** * *
14070 GATTTCTTAAAGTATTGAAGATGATCCATTCCTTCAAGCAATTTTTTGAACGTTCCATGCTCAAG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * * * * * * *
14135 AAATCGCATCTTTTGGACCAAGTAGTTTGTCATCTTGTAAATAACTTTTGGTCTTGGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAA
* * * * ** *
14200 ACTTATTAACATTAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCAAACTTTTCAAACTTT
131 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
* * * * * * ** *
14265 TTCGAGTTATTTCATAGCTTCGGTTCCTTAAAGTATTCAAGATGGTCATTTTTTTCAAGCAATTT
196 TACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCA-TTCCTTCGAGCAATTT
* * *** * * * *
14330 TCCAAACATTCCA-GCCTCGGGAAATTTTACCATTTGATCCAAATAGTTTGTCATCTTGTGAAAA
260 TTCAAACATTCCATG-CTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAAG
* * * * * *
14394 ACTTTTGGTCTTCGAATTGACAACTTATTTATGTGA-ATATTGTTTCTCTCTTGGTTCTTGGCCG
323 ACTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTGGCCG
*
14458 AAC-TTCAGAACTTT-TCAAACTTTTTCGAGTTCTTTTATAACTTC
387 AACTTTC-GAA-TTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
** * * *
14502 CCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCCAAACATTCCATGCTCGG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTT-CAAACATTCCATGCTCGA
* * * * *
14566 GAAATCACATCATTTTGTCCAAATATTTTGTCTTTTTGTGAACAAA-TTTCGATCTTTGAATTAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGT-AAAAAACTTTCGGTCTTTGAATTAA
* * * * * * *
14630 AAACTTATTTATGAGAGAATTATTTTTCTCTTGGTTATTGGCTGAACTT-TCGAATTTGTCAAAC
129 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCT-GAACTTGTCAAAC
* * * *
14694 TTTCT-CAAGTTCTTTTATAACTTTGGGTCCCTAAAGTATTCAAGATGATCGATTCCTTCAAG-A
193 TTT-TACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC-ATTCCTTCGAGCA
* * *
14757 ACTTATTT-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGT
256 A-TT-TTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
* * * * * * *
14821 AAGAAACTTTTGGTCTTTGAATTGAAGACTTATTTATC-TGAGAATTGTTTCTCTCTTGTTTCTT
319 AA-AGACTTTCGGTCTTAGAATTAAAAACTTATGTA-CGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
14885 GGCCGAAC-ATCTGAACATT-TCAAACTTTTACAAGTTATTTTATAACTTT
382 GGCCGAACTTTC-GAA-TTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
14934 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC-AATTTTCTAAGCGTTCCATGCTCGA
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTC-AAACATTCCATGCTCGA
* * * * * * ***
14998 GAAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTTCTCTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* * ** * * * ** *
15063 AACTTAATAAAATTAGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTTTCAAACTT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTT
* * * * * * * * * *
15128 TTTCGAGTTCTATTATAGCTTTGATTCCTTATAGCATTCACGACGATCCATTCCTTCGAGCAATT
195 TTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT-CATTCCTTCGAGCAATT
* * * * *
15193 TTTCGAACATTTCATGCTC-AGGAAATCACATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAAC
259 TTTCAAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-
* * * * * * *
15257 AAATTTTGGTCTTAGAATTAAAAACTTATTTACGTGAGAATGGTTTCTCCCTTGGTTCTTGGCTG
322 GACTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
* * * * * *
15322 AACTTTCAAACTTGTCAAACTTTTATGGGTTATTTTATAACTTT
387 AACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * * * *
15366 GGTTCCTTAAAGTACTCAAGACGATCCATTCCTTGGAAC-AATTTCCCAAACATTTCTTGCTCGG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTT-TCAAACATTCCATGCTCGA
* * *
15430 GAAATCGCATTATTTGGTCTAAATATTTTGTCCTTTTGTAAACAA--------CTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* * * *
15487 AACTTTTTTATGTGA-AATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTTGTCAAACAT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAAC-T
* * *
15551 TTT-CGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCTATTCCTTCGAGCAA-
194 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC-ATTCCTTCGAGCAAT
* * ** * * * *
15614 TTTTCAGAATATTCAATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA
258 TTTTCA-AACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AA
* * * * * * *
15679 AAATCTTTCGGTC-CATGAATTAAAAACTTATCTACATGAGAATTATTTCTCTCTTGGTTCATAG
321 AGA-CTTTCGGTCTTA-GAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * ** *
15743 CAGAACTTTCGAACATT-TCAAACTTTTTTGACTTCTTTTATAACTTC
384 CCGAACTTTCGAA-TTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* *
15790 CGTTCCTTAAAGTATT--AGA-G----A---C-----G---A---TC---CA-T-C---CTCGAG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * * * *
15826 AAATCGCATCATTTGGTCCAAATAATTTG-CCATTTTTTTAACAACTTTTGGTCTTTGAATTAAG
66 AAATCGCATCATTTGGTCCAAATATTTTGTCC-TTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* * * * * *
15890 AACTTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAATTT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAA-CT
* * * * * **
15955 ATTTATGTGAGAATTATTTCTCT--CTT-GGTT-CTTGGAGAAACTTATT-AACTTG-TCAAAGT
194 -TTTA---CA-AGTTCTTT-TATAACTTCGGTTCCTT----AAA-GTATTCAAGATGATC--A-T
* * * * * ** * * * **
16014 T-TTTCAAG--TTCTTTTAAAAC-TT-CAGTTCCTTAAAGTATTCAGGAGGATCGATTCCAACGT
245 TCCTTCGAGCAAT-TTTTCAAACATTCCA--TGC-TCGAGAAATC----GCATC-ATT---TGGT
* * * * *** ** * * * *** *
16074 GCAAAT-TTTTGAACATTCCATGCTCGGGA-AATCGCATCATTTG-ATCCAAATGGTTTATCCT-
298 CCAAATAGTTTG-TCATT--TTG-TAAAGACTTTCG-GTC-TTAGAAT-TAAA-AACTTAT-GTA
** * *** ** ***** ** ** * *
16135 TTTGTAAAAAACTTTCGATCT-TTAAATTAAAAACTTATTTATGTGAGAATGGTT-TC--TCTTT
354 CGTG-AGAATTGTTTC--TCTCTT-GGTTCTTGGCCGAACT-T-T-CGAAT--TTGTCAAACTTT
* ** *
16196 T--G-GTTCTTGGTCGAACTTTT
410 TACGAGTTCTT-TTATAAC-TTC
* * * * * * *
16216 GAACTTT-TCAAACTTTTTCAAGTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCC
1 G--GTTTCTTAAA-GTATTCAAG-AC---GAT--C--C-ATTC------CT-TT------G----
* * * ** * * *
16280 ATTGCTTAGAGAAATTTTTCGAACATTCCATTCTCGGGAAATAACATCTTTTGGTCCAAATAATC
37 A--GC------AAA-TTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATATTT
* * * * *
16345 TATCATTTTGTAAAGAAC-TTCTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTGTTTCTC
93 TGTCCTTTTGTAAAAAACTTTC-GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
** * * *
16409 TCTTGGTTCTTGATCGAACTTCTGAACTTGTCAAACTTTTTCCAGTTCTTTTATAACTTTGGTTC
157 TCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTC
* * * ** * *
16474 CTTAAAGTATTCAAGACGATCGAATCCTTCAAGCAATTTTTTGAACATACCAAGCTC-AGGAAAT
222 CTTAAAGTATTCAAGATGATC-ATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGA-GAAAT
* * * * * *
16538 CACATCATTTGGTCCGAATAGTTTGTCATTTCGT-AAGCAACTCTT-GGTCTTTGAATTGAAGAC
285 CGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAG--ACT-TTCGGTCTTAGAATTAAAAAC
* * * **
16601 TTATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGCCGAAC-ATCTGAACATGTCAAACTTTT
347 TTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAATTTGTCAAACTTTT
* *
16665 ACAAGTTCTTTTATAACTTT
411 ACGAGTTCTTTTATAACTTC
* * * ** * *
16685 GGTTCCTTAACGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAGCGTTCCATGCTCGAG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * * * * * * *
16750 AAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTGCTCCTTGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAA
* ** * * * ** *
16815 ACTTATTAAAATTAGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTTTCAAACTTT
131 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
*** * * * * * * * **
16880 TTTGAGTTCTATTATAGCTTTGATTCCTTATAGCATTCACGGCGATCCATTCCTTCGAGCAATTT
196 TACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT-CATTCCTTCGAGCAATTT
** * * * *
16945 TTTGAACATTTCATGCTC-AGGAAATCGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACA
260 TTCAAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-G
** * * * * *
17009 ACTTTTTGTCTTAGAATTAAAAACTTATTTAGGTGAGAATGGTTTCTCCCTTGGTTCTTGGCTGA
323 ACTTTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA
* * ** * *
17074 ACTTTTGAACTTGTCAAACTTTTATAAGTTATTTTATAACTTT
388 ACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * ** * * * * * *
17117 GGTTCCTTAAACTACACAAGACGATCCATTCCTTGGAAC-AATTTCCCAAACATTTCTTGCTCGG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTT-TCAAACATTCCATGCTCGA
* *
17181 GAAATCGCATCATTTGGTCTAAATATTTTGTCCTTTTGTAAACAA--------CTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* *
17238 AACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACAT
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAAC-T
* * * *
17303 TTT-CGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCGATTCCTTCCAGCAA-
194 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC-ATTCCTTCGAGCAAT
* ** * * * * * *
17366 TTTTCAGAATATTCCATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTAGTAAA
258 TTTTCA-AACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AA
* * * * * *
17431 AAATTTTCGGTC-TATGAATTAAAAACTTATCTACATGAGAATTATTTCTCTCTTGGTTCATGGC
321 AGACTTTCGGTCTTA-GAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* ** * *
17495 CGAAC-TTCTGAACATT-TCAAACTTTTTTGACTTCTTTTATAACTTT
385 CGAACTTTC-GAA-TTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * * * * * * *
17541 GGTTCCTTAAAGTATTCGAGACGATCCATTTCTTCGAACAATTTTTCGATCAATCCATTCTCGGG
1 GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
* * * *
17606 AAATCGCATCATTTGGTCCAAATAATTTT-TCATTTTTTAAAAAACTTTTGGTATTTGAATTAAA
66 AAATCGCATCATTTGGTCCAAAT-ATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAA
* * * * *
17670 AACTTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAA
130 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAA
17732 TTTATTTATG
Statistics
Matches: 4388, Mismatches: 1040, Indels: 939
0.69 0.16 0.15
Matches are distributed among these distances:
394 2 0.00
395 41 0.01
398 1 0.00
399 1 0.00
400 2 0.00
403 25 0.01
404 42 0.01
405 3 0.00
407 4 0.00
408 5 0.00
409 5 0.00
410 11 0.00
411 23 0.01
412 6 0.00
414 1 0.00
415 4 0.00
416 3 0.00
417 1 0.00
418 4 0.00
419 13 0.00
420 4 0.00
421 8 0.00
422 16 0.00
423 155 0.04
424 449 0.10
425 35 0.01
426 3 0.00
427 10 0.00
428 10 0.00
429 151 0.03
430 212 0.05
431 33 0.01
432 1636 0.37
433 478 0.11
434 12 0.00
435 2 0.00
436 6 0.00
437 5 0.00
438 3 0.00
439 5 0.00
440 7 0.00
441 31 0.01
442 28 0.01
443 27 0.01
444 37 0.01
445 31 0.01
446 25 0.01
447 33 0.01
448 26 0.01
449 9 0.00
450 4 0.00
451 17 0.00
452 47 0.01
453 9 0.00
454 15 0.00
455 9 0.00
456 15 0.00
457 10 0.00
458 11 0.00
459 8 0.00
460 5 0.00
461 6 0.00
462 1 0.00
463 4 0.00
464 3 0.00
465 1 0.00
466 7 0.00
467 16 0.00
468 15 0.00
469 9 0.00
470 13 0.00
471 9 0.00
472 9 0.00
473 31 0.01
474 19 0.00
475 16 0.00
476 14 0.00
477 18 0.00
478 9 0.00
479 1 0.00
480 12 0.00
481 11 0.00
482 14 0.00
483 18 0.00
484 21 0.00
485 34 0.01
486 22 0.01
487 11 0.00
488 7 0.00
489 4 0.00
490 7 0.00
491 3 0.00
492 110 0.03
493 7 0.00
494 18 0.00
495 6 0.00
496 7 0.00
497 16 0.00
498 10 0.00
499 7 0.00
500 8 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (430 bp):
GGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTTCAAACATTCCATGCTCGAG
AAATCGCATCATTTGGTCCAAATATTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTT
TACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCATTCCTTCGAGCAATTTT
TCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAGACT
TTCGGTCTTAGAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
TTCGAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
Found at i:13278 original size:69 final size:69
Alignment explanation
Indices: 13140--13278 Score: 224
Period size: 69 Copynumber: 2.0 Consensus size: 69
13130 GTTTCTTAAA
* * * ** *
13140 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTTCATGCTCAGGAAATTGCATCT
1 GTATTCAAGAAGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCACAGGAAATCACATCA
13205 TTTG
66 TTTG
13209 GTATTCAAGAAGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCACAGGAAATCACATCA
1 GTATTCAAGAAGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCACAGGAAATCACATCA
13274 TTTG
66 TTTG
13278 G
1 G
13279 ACCAAGTTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.33
Consensus pattern (69 bp):
GTATTCAAGAAGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCACAGGAAATCACATCA
TTTG
Found at i:13590 original size:216 final size:216
Alignment explanation
Indices: 13209--15825 Score: 2262
Period size: 216 Copynumber: 12.1 Consensus size: 216
13199 GCATCTTTTG
* * *
13209 GTATTCAAGAAGATCCATTCCTTCGAGCAA-TTTTCTAAACATTCCATGCAC-AGGAAATCACAT
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCACAT
* * * * * ** * *
13272 CATTTGGACCAAGTTGTTTGTCATTTTGTAAATAACTGTTGGAATTTTAATTAAAAACTTATTAA
64 CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTAT
*
13337 CATTG-GAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCAAACTTTTCAAACTTTTTCGAGTT
129 CA-TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTT
* * **
13401 CTTTTATAGCTTCAGTTCCTTATT
193 CTTTTATAACTTCGGTTCCTTAAA
* * * * * *
13425 GTATTCAATATGATCCATTCCTTCGACCAATTTTTCGAATATTCCATGCTCGAGTAATTACATCA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA
** * * * *
13490 TTTGAACCAAGTAATTTGTCCTTTTGTAAACAA-TTTTCGGTCTTTGAATTAAAAATTTATTATC
66 TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT-GGTCTTTGAATTAAAAACTTATTATC
* * * *
13554 ATTAGAATTGTTTCTCTCTTGATTCTTAGCCGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
130 ATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCT
*
13619 TTTATAACATCGGTTCCTTAAA
195 TTTATAACTTCGGTTCCTTAAA
* * * *
13641 GTACTCAAGACAATCGATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGAGAAATAACATC
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATC
* * * ****
13705 ATTTAGTCCAAATAGTTTGTCCTTTTGTAAA-AAGCTTTCT-ATCATTTTGTAAAGTACTTTTGG
65 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-CTTT-TGGTC--TTTG---A--A-TTAAAA
* ** * * * * * * *
13768 TCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCTTGGTTCTTAGCCGAACTTTCGAAC
120 AC-TT--ATT-ATCA-TGA--GA-AT-TG--TT-TCTCTCTTGGTTCTTGGCCGAACTTCCAAAC
* * * ** *
13833 TTGTCAATCTTTTTCGAGTTCTTTTATAACTGCAATTACTTAAA
173 TTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * *
13877 GTATTCAAGACGA-CCAGTTCCTTCTAGCAATTTTTCGAAAATTCCATGCTTCGA-AAATCGCAT
1 GTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACAT
* * *
13940 CATTTGGTCCAAATATTTTGTCATTTCGTAAAGAACTTTTGG----T-AA-T------TTATGTA
64 CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT-TA
* * * ** ** * * **
13993 -CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACATCTGAACTTACCAAACATTTACTTGTT
128 TCATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTT
* * *
14057 CTTTTATAACTTTGATTTCTTAAA
193 CTTTTATAACTTCGGTTCCTTAAA
* * * * * * * *
14081 GTATTGAAGATGATCCATTCCTTCAAGCAATTTTTTGAACGTTCCATGCTCAAGAAATCGCATCT
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA
* * * * * *
14146 TTTGGACCAAGTAGTTTGTCATCTTGTAAATAACTTTTGGTCTTGGAATTAAAAACTTATTAACA
66 TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTATCA
* * *
14211 TTAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTATT
131 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCTT
* *
14276 TCATAGCTTCGGTTCCTTAAA
196 TTATAACTTCGGTTCCTTAAA
* * ** * * * * *** *
14297 GTATTCAAGATGGT-CATTTTTTTCAAGCAATTTTCCAAACATTCCA-GCCTCGGGAAATTTTAC
1 GTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATG-CTCGAGAAATCACAT
* * * * *
14360 CATTTGATCCAAATAGTTTGTCATCTTGTGAAA-AACTTTTGGTCTTCGAATTGACAACTTATT-
64 CATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTA
*
14423 T-ATGTGAATATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-CAGAACTTTTCAAACTTTTTCGA
128 TCATGAG-A-ATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCA-AACTTTTCAAACTTTTTCGA
**
14486 GTTCTTTTATAACTTCCCTTCCTTAAA
190 GTTCTTTTATAACTTCGGTTCCTTAAA
* * *
14513 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA
* * * * * * * *
14578 TTTTGTCCAAATATTTTGTCTTTTTGTGAACAAATTTCGATCTTTGAATTAAAAACTTATTTATG
66 TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTATC
* * * * * * * *
14643 A-GAGAATTATTTTTCTCTTGGTTATTGGCTGAACTTTCGAA-TTTGTCAAACTTTCTCAAGTTC
130 ATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTT-TCAAACTTTTTCGAGTTC
* * *
14706 TTTTATAACTTTGGGTCCCTAAA
194 TTTTATAACTTCGGTTCCTTAAA
* * * *
14729 GTATTCAAGATGATCGATTCCTTCAAG-AACTTATTT-GAACATTCCATGCTCGGGAAATCACAT
1 GTATTCAAGACGATCCATTCCTTCGAGCAA-TT-TTTCGAACATTCCATGCTCGAGAAATCACAT
* *
14792 CATTTGGTCCAAATAGTTTGTCATTTTGTAAGA-AACTTTTGGTCTTTGAATTGAAGACTTATTT
64 CATTTGGTCCAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTA-TT
* * ** * * *
14856 ATC-TGAGAATTGTTTCTCTCTTGTTTCTTGGCCGAACATCTGAACATTTCAAACTTTTACAAGT
127 ATCATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGT
* *
14920 TATTTTATAACTTTGGTTCCTTAAA
192 TCTTTTATAACTTCGGTTCCTTAAA
* * * *
14945 GTATTCAAGACGATCCATTCCTTTGAGCAA-TTTTCTAAGCGTTCCATGCTCGAGAAATCGCATC
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGAGAAATCACATC
* * * ** * **
15009 ATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTTCTCTTTGAATTAAAAACTTAATAAA
65 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTATC
* * *
15074 ATTAGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTTTCAAACTTTTTCGAGTTCT
130 ATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCT
* * * * *
15139 ATTATAGCTTTGATTCCTTATA
195 TTTATAACTTCGGTTCCTTAAA
* * *
15161 GCATTCACGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTC-AGGAAATCACATC
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATC
* * * *
15225 ATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAATTTTGGTCTTAGAATTAAAAACTTATT-TA
65 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTAT-
* * * * * * *
15289 CGTGAGAATGGTTTCTCCCTTGGTTCTTGGCTGAACTTTCAAACTTGTCAAACTTTTAT-GGGTT
129 CATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTT-TCGAGTT
* *
15353 ATTTTATAACTTTGGTTCCTTAAA
193 CTTTTATAACTTCGGTTCCTTAAA
* * * ** * * * * * *
15377 GTACTCAAGACGATCCATTCCTTGGAACAATTTCCCAAACATTTCTTGCTCGGGAAATCGCATTA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA
* * * *
15442 TTTGGTCTAAATATTTTGTCCTTTTGTAAACAA--------CTTTGAATTAAAAACTT-TT-TTA
66 TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTATCA
* * * * *
15497 TGTGAAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTTGTCAAACATTTTCGAGTTCT
131 TGAG-AATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCT
*
15562 TTTATAACTTCGGTTCCTTAAT
195 TTTATAACTTCGGTTCCTTAAA
* * * ** * * **
15584 GTATTCAAGACGATCTATTCCTTCGAGCAA-TTTTCAGAATATTCAATTATTGGGAAATCGTATC
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATC
* * * **
15648 ATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAATCTTTCGGTCCATGAATTAAAAACTTATCTA
65 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTAT-TA
* * * * * * * * *
15713 -CATGAGAATTATTTCTCTCTTGGTTCATAGCAGAACTTTCGAACATTTCAAACTTTTTTGACTT
128 TCATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTT
*
15777 CTTTTATAACTTCCGTTCCTTAAA
193 CTTTTATAACTTCGGTTCCTTAAA
15801 GTATT-AGAGACGATCCA-TCC-TCGAG
1 GTATTCA-AGACGATCCATTCCTTCGAG
15826 AAATCGCATC
Statistics
Matches: 1951, Mismatches: 356, Indels: 189
0.78 0.14 0.08
Matches are distributed among these distances:
203 3 0.00
204 141 0.07
205 5 0.00
206 7 0.00
207 150 0.08
208 18 0.01
209 3 0.00
210 1 0.00
211 2 0.00
213 3 0.00
214 7 0.00
215 40 0.02
216 1261 0.65
217 119 0.06
218 13 0.01
219 1 0.00
221 1 0.00
222 1 0.00
223 1 0.00
224 3 0.00
225 2 0.00
226 1 0.00
227 3 0.00
228 2 0.00
229 3 0.00
230 1 0.00
231 1 0.00
232 2 0.00
233 1 0.00
235 5 0.00
236 139 0.07
237 11 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA
TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTATCA
TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCTT
TTATAACTTCGGTTCCTTAAA
Found at i:13926 original size:236 final size:239
Alignment explanation
Indices: 13523--13971 Score: 599
Period size: 236 Copynumber: 1.9 Consensus size: 239
13513 TTGTAAACAA
* * *
13523 TTTTCGGTCTTTGAATTAAAAATTTATTATCATTAGAATTGTTTCTCTCTTGATTCTTAGCCGAA
1 TTTTCGGTCTTTGAATTAAAAACTTATTATCATGAGAATTGATTCTCTCTTGATTCTTAGCCGAA
** *
13588 CTTCCAAACTTGTCAAACTTTTTCGAGTTCTTTTATAACATCGGTTCCTTAAAGTACTCAAGACA
66 CTTCCAAACTTGTCAAACTTTTTCGAGTTCTTTTATAACATCAATTACTTAAAGTACTCAAGACA
* *
13653 ATCGATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAGAAATAACATCATTTAGTCCAAA
131 ACCGATTCCTTCGAGCAATTTTCTGAAAATTCCATGCTTCGA-AAATAACATCATTTAGTCCAAA
* *
13717 TAGTTTGTCCTTTTGTAAAAAGCTTTCTATCATTTTGTAAAGTAC
195 TAGTTTGTCATTTCGTAAAAAGCTTTCTATCATTTTGTAAAGTAC
* *
13762 TTTT-GGTCTTTGGATTAAAAACTTATT-TACATGAGAATT-ATT-TCTCTTGGTTCTTAGCCGA
1 TTTTCGGTCTTTGAATTAAAAACTTATTAT-CATGAGAATTGATTCTCTCTTGATTCTTAGCCGA
* * * *
13823 ACTTTCGAACTTGTCAATCTTTTTCGAGTTCTTTTATAAC-TGCAATTACTTAAAGTATTCAAGA
65 ACTTCCAAACTTGTCAAACTTTTTCGAGTTCTTTTATAACAT-CAATTACTTAAAGTACTCAAGA
* * ** *
13887 CGACC-AGTTCCTTCTAGCAATTTT-TCGAAAATTCCATGCTTCGAAAATCGCATCATTTGGTCC
129 CAACCGA-TTCCTTCGAGCAATTTTCT-GAAAATTCCATGCTTCGAAAATAACATCATTTAGTCC
*
13950 AAATATTTTGTCATTTCGTAAA
192 AAATAGTTTGTCATTTCGTAAA
13972 GAACTTTTGG
Statistics
Matches: 183, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
235 3 0.02
236 139 0.76
237 7 0.04
238 30 0.16
239 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (239 bp):
TTTTCGGTCTTTGAATTAAAAACTTATTATCATGAGAATTGATTCTCTCTTGATTCTTAGCCGAA
CTTCCAAACTTGTCAAACTTTTTCGAGTTCTTTTATAACATCAATTACTTAAAGTACTCAAGACA
ACCGATTCCTTCGAGCAATTTTCTGAAAATTCCATGCTTCGAAAATAACATCATTTAGTCCAAAT
AGTTTGTCATTTCGTAAAAAGCTTTCTATCATTTTGTAAAGTAC
Found at i:16005 original size:60 final size:60
Alignment explanation
Indices: 15893--16011 Score: 150
Period size: 60 Copynumber: 2.0 Consensus size: 60
15883 AATTAAGAAC
* * * *
15893 TTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAAT
1 TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGCAGAACTTATGAACTTGTCAAAT
* * * *
15953 TTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGG-AGAAACTTATTAACTTGTCAAA
1 TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGCAG-AACTTATGAACTTGTCAAA
16012 GTTTTTCAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
59 1 0.02
60 49 0.98
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (60 bp):
TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGCAGAACTTATGAACTTGTCAAAT
Found at i:16340 original size:216 final size:216
Alignment explanation
Indices: 15953--17731 Score: 1859
Period size: 216 Copynumber: 8.3 Consensus size: 216
15943 CTTGTCAAAT
* * * * *
15953 TTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGG-AGAAACTTATTAACTTGTCAAAGTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG-AACTTCTGAACTTGTCAAACTTTT
* ** * * * * *
16017 TCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAGGAGGATCGATTCC-AACGTGCAAATT
65 TCAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTA-GAG-AAATT
* * * * *
16081 TTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATGGTTTATCCTTTTGTAAAAA
128 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* *
16145 ACTTTCGATCTTTAAATTAAAAAC
193 ACTTTCGGTCTTTGAATTAAAAAC
* * * * *
16169 TTATTTATGTGAGAATGGTTTCTCTTTTGGTTCTTGGTCGAACTTTTGAACTTTTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
*** * *
16234 CAAGTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCCATTGCTTAGAGAAATTTTT
66 CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATTTTT
* ** * * * * *
16299 CGAACATTCCATTCTCGGGAAATAACATCTTTTGGTCCAAATAATCTATCATTTTGTAAAGAAC-
131 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
*
16363 TTCTGGTCTTTGGATTAAAAAC
196 TTC-GGTCTTTGAATTAAAAAC
**
16385 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGATCGAACTTCTGAACTTGTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
* * * *
16450 CCAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGAATCCTTCA-AGCAATTTT
66 CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-AGAGAAATTTT
* * * * * * * *
16514 TTGAACATACCAAGCTCAGGAAATCACATCATTTGGTCCGAATAGTTTGTCATTTCGTAAGCAAC
130 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
* *
16579 TCTT-GGTCTTTGAATTGAAGAC
195 T-TTCGGTCTTTGAATTAAAAAC
* * * * *
16601 TTATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGCCGAACATCTGAACATGTCAAACTTTTA
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
* * *
16666 CAAGTTCTTTTATAACTTTGGTTCCTTAACGTATTCAAGACGATCCATTCCTTTGAGCAATTTTT
66 CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATTTTT
* * * * * * *
16731 TGAGCGTTCCATGCTCGAGAAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACT
131 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
* * *
16796 TTTGCTCCTTGAATTAAAAAC
196 TTCGGTCTTTGAATTAAAAAC
* ** * * * ** *
16817 TTATTAAAATTAGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTTTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
** * * * * * * * * *
16882 TGAGTTCTATTATAGCTTTGATTCCTTATAGCATTCACGGCGATCCATTCCTTCGAGCAATTTTT
66 CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATTTTT
* * * * *
16947 TGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACT
131 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
** *
17012 TTTTGTCTTAGAATTAAAAAC
196 TTCGGTCTTTGAATTAAAAAC
* * * * *
17033 TTATTTAGGTGAGAATGGTTTCTCCCTTGGTTCTTGGCTGAACTTTTGAACTTGTCAAACTTTTA
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTT-
* * ** *
17098 T-AAGTTATTTTATAACTTTGGTTCCTTAAACTACACAAGACGATCCATTCCTTGGA-ACAATTT
65 TCAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGA-AATTT
** * * * * * *
17161 CCCAAACATTTCTTGCTCGGGAAATCGCATCATTTGGTCTAAATATTTTGTCCTTTTGTAAACAA
129 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
17226 --------CTTTGAATTAAAAAC
194 CTTTCGGTCTTTGAATTAAAAAC
* *
17241 TTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACATTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
* * * * ** *
17306 CGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCGATTCCTTCCAGCAA-TTTT
66 CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATTTTT
* ** * * * * * * *
17370 CAGAATATTCCATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTAGTAAAAAAT
131 C-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
*
17435 TTTCGGTCTATGAATTAAAAAC
195 TTTCGGTCTTTGAATTAAAAAC
* ** * *
17457 TTATCTACATGAGAATTATTTCTCTCTTGGTTCATGGCCGAACTTCTGAACATT-TCAAACTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAAC-TTGTCAAACTTTT
** * * * *
17521 TTGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCGAGACGATCCATTTCTTCGA-ACAATTT
65 TCAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGA-AATTT
* * * * * * *
17585 TTCGATCAATCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTTTTCATTTTTTAAAAAA
129 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
* *
17650 CTTTTGGTATTTGAATTAAAAAC
194 CTTTCGGTCTTTGAATTAAAAAC
* * * *
17673 TTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAA
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAA
17732 TTTATTTATG
Statistics
Matches: 1299, Mismatches: 238, Indels: 52
0.82 0.15 0.03
Matches are distributed among these distances:
207 4 0.00
208 167 0.13
215 15 0.01
216 1100 0.85
217 11 0.01
218 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTT
CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATTTTT
CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
TTCGGTCTTTGAATTAAAAAC
Found at i:17194 original size:648 final size:643
Alignment explanation
Indices: 13746--17731 Score: 2499
Period size: 648 Copynumber: 6.2 Consensus size: 643
13736 AAGCTTTCTA
** * ** *
13746 TCATTTTGTAAAGTACTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATT-ATT-TCTCT
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* * * **** *
13809 TGGTTCTTAGCCGAACTT-TCGAACTTGTCAATCTTTTTCGAGTTCTTTTATAACTGCAATTACT
66 TGGTTCTTGGCTGAACTTCT-GAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
* * * * * *
13873 TAAAGTATTCAAGACGA-CCAGTTCCTTCTAGCAATTTTTCGAAA-ATTCCATGCTTC-GAAAAT
130 TAAAGTATACAAGACGATCCA-TTCCTTCGAACAA-TTTTCCAAACATTTCATGC-TCAGGAAAT
* * * * * *
13935 CGCATCATTTGGTCCAAATATTTTGTCATTTCGTAA-AGAA----CT-TTTG--GT---AATTTA
192 CACATCATTTGGTCCAAATAGTTTGTCATTTTGTAACA-AATTTGGTCTTTGAATTAAAAACTTA
* * ** * **
13989 TGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACATCTGAACTTACCAAACATTTACTT
256 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TCTGAACTTGTCAAACTTTTACAA
* * * *
14054 GTTCTTTTATAACTTTGATTTCTTAAAGTATTGAAGATGATCCATTCCTTCAAGCAATTTTTTGA
320 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTTGA
* * * * *
14119 ACGTTCCATGCTCAAGAAATCGCATCTTTTGGACCAAGTAGTTTGTCATCTTGTAAATAACTTTT
385 ACATTCCATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAAA-AACTTTT
* * *
14184 GGTCTTGGAATTAAAAACTTATTAACATTAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCC
449 GGTCTT-GAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCC
* * * * * *
14249 AAACTTTTCAAACTTTTTCGAGTTATTTCATAGCTTCGGTTCCTTAAAGTATTCAAGATGGT-CA
513 GAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
** * * *** * *
14313 TTTTTTTCAAGCAATTTTCCAAACATTCCA-GCCTCGGGAAATTTTACCATTTGATCCAAATAGT
578 -TTCCTTCGAGCAATTTTCCGAACATTCCATG-CTCGGGAAATCGCATCATTTGGTCCAAATAGT
14377 TTG
641 TTG
* * * * *
14380 TCATCTTGTGAAAAACTTTTGGTCTTCGAATTGACAACTTATTTATGTGA-ATATTGTTTCTCTC
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA-ATTGTTTCTCTC
* * * ***
14444 TTGGTTCTTGGCCGAACTTCAGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCCCTTCCT
65 TTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
* * * *
14509 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCAC
130 TAAAGTATACAAGACGATCCATTCCTTCGAACAATTTTCCAAACATTTCATGCTCAGGAAATCAC
* * * *
14574 ATCATTTTGTCCAAATATTTTGTCTTTTTGTGAACAAATTTCGATCTTTGAATTAAAAACTTATT
195 ATCATTTGGTCCAAATAGTTTGTCATTTTGT-AACAAATTT-GGTCTTTGAATTAAAAACTTATT
* * * * * * * *
14639 TATGAGAGAATTATTTTTCTCTTGGTTATTGGCTGAACTTTCGAATTTGTCAAACTTTCT-CAAG
258 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTCT-GAACTTGTCAAACTTT-TACAAG
* * * * *
14703 TTCTTTTATAACTTTGGGTCCCTAAAGTATTCAAGATGATCGATTCCTTCAAG-AACTTATTTGA
321 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTTGA
* * *
14767 ACATTCCATGCTCGGGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAGAAACTTTT
385 ACATTCCATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAA-AAACTTTT
* * * * * * *
14832 GGTCTTTGAATTGAAGACTTATTTATCTGAGAATTGTTTCTCTCTTGTTTCTTGGCCGAACATCT
449 GGTC-TTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCC
* * * * *
14897 GAACATTTCAAACTTTTACAAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
513 GAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * *
14962 TTCCTTTGAGCAATTTT-CTAAGCGTTCCATGCTCGAGAAATCGCATCATTTTGACCAAGTAGTT
578 TTCCTTCGAGCAATTTTCCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTT
15026 TG
642 TG
* ** * * ** *
15028 TCATTTTGTAAACAACTTTTTCTCTTTGAATTAAAAACTTAATAAAATTAGAATTGTTTCTCTCT
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* ** * * * *
15093 TGGTTCTTGG-TCAAACTTCCAAACTTTTCAAACTTTTTCGAGTTCTATTATAGCTTTGATTCCT
66 TGGTTCTTGGCT-GAACTTCTGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
* * * * * * *
15157 TATAGCATTCACGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCAGGAAATCAC
130 TAAAGTATACAAGACGATCCATTCCTTCGAACAATTTTCCAAACATTTCATGCTCAGGAAATCAC
* * *
15222 ATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAATTTTGGTCTTAGAATTAAAAACTTATT
195 ATCATTTGGTCCAAATAGTTTGTCATTTTGT-AACAAA-TTTGGTCTTTGAATTAAAAACTTATT
* * * * * ***
15287 TACGTGAGAATGGTTTCTCCCTTGGTTCTTGGCTGAACTTTCAAACTTGTCAAACTTTTATGGGT
258 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTCT-GAACTTGTCAAACTTTTACAAGT
* * * ****
15352 TATTTTATAACTTTGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTGGAA-CAATTTCCCAAA
322 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-CAAGCAATTTTTTGAA
* * * * * * * *
15416 CATTTCTTGCTCGGGAAATCGCATTATTTGGTCTAAATATTTTGTCCTTTTGTAAACAAC-----
386 CATTCCATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAAA-AACTTTTG
* *
15476 -T-TTGAATTAAAAACTTTTTTATGTGA-AATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTCCG
450 GTCTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTC-GAACTTCCG
* * * *
15537 AACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCTAT
514 AACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * ** * *
15602 TCCTTCGAGCAATTTTCAGAATATTCAATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTG
579 TCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
* * ** * ** *
15667 TCCTTTTGTAAAAAATCTTTCGGTCCATGAATTAAAAACTTATCTACATGAGAATTATTTCTCTC
1 TCATTTTGTAAAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC
* * * * * **
15732 TTGGTTCATAGCAGAACTT-TCGAACATT-TCAAACTTTTTTGACTTCTTTTATAACTTCCGTTC
65 TTGGTTCTTGGCTGAACTTCT-GAAC-TTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * *
15795 CTTAAAGTATTA-GAGACGATCCA-TCC-TCGAGA-AA---TCGC-ATCA-TT--TGGTC--CAA
128 CTTAAAGTA-TACAAGACGATCCATTCCTTCGA-ACAATTTTC-CAAACATTTCATGCTCAGGAA
*** * *
15847 AT---A--ATTT-G-CC----A-TTT-T--TTTAACAAC--TTTTGGTCTTTGAATTAAGAACTT
190 ATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAACAAATTTGGTCTTTGAATTAAAAACTT
* * * * * *
15895 ATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAATTTATTTA
255 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTCTGAACTTGTCAAA-CT-TTTA
* * * * * *** * *
15960 TGTGAGAATT-ATTTCT--CTCTTGGTT-CTTGGAGAAACTTATT-AACTTG-TCAAAGTT-TTT
317 ---CA-AGTTCTTTTATAACT-TTGGTTCCTT----AAA-GTATTCAAGACGATC-CA-TTCCTT
* * *** * *** * * * ***
16018 CAAG---TTCTTTT-AAAACTT-CA-GTTCCTTAAA--GTATTCAGGAGGATCGATTCCAACGTG
370 CAAGCAATT-TTTTGAACA-TTCCATGCTCGAGAAATCGCA-TCATTTGGACCAAAT--AGTTTG
* * * * ** * *** * ** * *
16075 -CAAATTTT-TGAACA-TTCCATGCTCGGGAAAT-CGCA-TCATTTGAT-CCA-AATGGTTTATC
430 TC--ATTTTGTAAAAACTT--TTGGTCTTGAATTAAAAACTTATTT-ATATGAGAATTGTTTCTC
* * * * * *** * *
16133 -CTTTTGTAAAAAACTTTCGATCTTTAAATTAAAAACTTATTTATGTGAGAATGGTTTCTCTTTT
490 TC-TTGGT-----TC-TT-GGTC--GAACTTCCGAACTT-TTCA----A-ACT--TTT-TC----
* ** ** ** * * * * * * *
16197 G-GTTCTTGGTCGAACTTTTGAACTTTTCAAACTTTTTCAAGTTCTTTTAT-AACTTCAATTC-A
532 GAGTTCTT-TTATAACTTCGGTTC-CTT-AAA-GTATTCAAG-AC---GATCCA-TTC-CTTCGA
** * * * **
16259 TTAAAGTATTCAAGACGATCCATTGCTTAGAGAAATTTTTCGAACATTCCATTCTCGGGAAATAA
587 -GCAA-TTTTC----CGA---A---C-------ATT------------CCATGCTCGGGAAATCG
* * * *
16324 CATCTTTTGGTCCAAATAATCTA
621 CATCATTTGGTCCAAATAGTTTG
* * *
16347 TCATTTTGTAAAGAACTTCTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* *
16412 TGGTTCTT-GATCGAACTTCTGAACTTGTCAAACTTTTTCCAGTTCTTTTATAACTTTGGTTCCT
66 TGGTTCTTGGCT-GAACTTCTGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
* * * *** ** *
16476 TAAAGTATTCAAGACGATCGAATCCTTC-AAGCAATTTTTTGAACATACCAAGCTCAGGAAATCA
130 TAAAGTATACAAGACGATCCATTCCTTCGAA-CAATTTTCCAAACATTTCATGCTCAGGAAATCA
* * * * *
16540 CATCATTTGGTCCGAATAGTTTGTCATTTCGTAAGCAACTCTTGGTCTTTGAATTGAAGACTTAT
194 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAA-CAAAT-TTGGTCTTTGAATTAAAAACTTAT
* *
16605 TTACGTGAGAATTGTTTATCTCTTGGTTCTTGGCCGAACATCTGAACATGTCAAACTTTTACAAG
257 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TCTGAACTTGTCAAACTTTTACAAG
* ** *
16670 TTCTTTTATAACTTTGGTTCCTTAACGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAG
321 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTTGAA
* * *
16735 CGTTCCATGCTCGAGAAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTG
386 CATTCCATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAAA-AACTTTTG
* * * * * *
16800 CTCCTTGAATTAAAAACTTATTAAAATTAGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCA
450 GT-CTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCG
* * * * * * * * *
16865 AACTTTTCAAACTTTTTTGAGTTCTATTATAGCTTTGATTCCTTATAGCATTCACGGCGATCCAT
514 AACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
** * * * *
16930 TCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAAGAGTTTG
579 TCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * * * *
16995 TCATTTTGTAAACAACTTTTTGTCTTAGAATTAAAAACTTATTTAGGTGAGAATGGTTTCTCCCT
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* * *
17060 TGGTTCTTGGCTGAACTTTTGAACTTGTCAAACTTTTAT-AAGTTATTTTATAACTTTGGTTCCT
66 TGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTT-TCGAGTTCTTTTATAACTTTGGTTCCT
* * * * * * *
17124 TAAACTACACAAGACGATCCATTCCTTGGAACAATTTCCCAAACATTTCTTGCTCGGGAAATCGC
130 TAAAGTATACAAGACGATCCATTCCTTCGAACAATTTTCCAAACATTTCATGCTCAGGAAATCAC
* * * *
17189 ATCATTTGGTCTAAATATTTTGTCCTTTTGTAA-ACAA------CTTTGAATTAAAAACTTTTTT
195 ATCATTTGGTCCAAATAGTTTGTCATTTTGTAACA-AATTTGGTCTTTGAATTAAAAACTTATTT
* *
17247 ATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACATTTT-CGAGT
259 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TCTGAACTTGTCAAAC-TTTTACAAGT
* * * * ** *
17311 TCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCGATTCCTTCCAGCAATTTTCAGAAT
322 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTTGAAC
** * * * * * * * *
17376 ATTCCATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTAGTAAAAAATTTTCGG
387 ATTCCATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAAAAACTTTT-GG
* * * * * *
17441 TCTATGAATTAAAAACTTATCTACATGAGAATTATTTCTCTCTTGGTTCATGGCCGAACTTCTGA
451 TCT-TGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCGA
* * * * *
17506 ACATTTCAAACTTTTTTGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCGAGACGATCCATT
515 ACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * * *
17571 TCTTCGAACAATTTTTCGATCAATCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTTT
580 CCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * *
17635 TCATTTTTTAAAAAACTTTTGGTATTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCTCG
1 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* * *
17700 TAGTTCTTGGCCGAAGTTCTGAACTTGTCAAA
66 TGGTTCTTGGCTGAACTTCTGAACTTGTCAAA
17732 TTTATTTATG
Statistics
Matches: 2551, Mismatches: 588, Indels: 420
0.72 0.17 0.12
Matches are distributed among these distances:
611 65 0.03
612 5 0.00
613 10 0.00
614 16 0.01
615 21 0.01
616 11 0.00
617 7 0.00
618 12 0.00
619 7 0.00
620 18 0.01
621 4 0.00
622 4 0.00
623 1 0.00
624 1 0.00
625 5 0.00
626 2 0.00
627 2 0.00
628 1 0.00
629 10 0.00
630 6 0.00
632 4 0.00
633 1 0.00
634 46 0.02
635 17 0.01
636 134 0.05
637 10 0.00
638 10 0.00
639 158 0.06
640 536 0.21
641 13 0.01
642 11 0.00
643 6 0.00
644 2 0.00
645 8 0.00
646 2 0.00
647 10 0.00
648 889 0.35
649 26 0.01
650 5 0.00
651 4 0.00
655 2 0.00
658 1 0.00
660 2 0.00
667 1 0.00
668 2 0.00
670 1 0.00
673 2 0.00
677 3 0.00
678 9 0.00
679 113 0.04
680 49 0.02
681 4 0.00
682 1 0.00
683 5 0.00
684 6 0.00
685 2 0.00
686 8 0.00
687 8 0.00
689 4 0.00
690 1 0.00
691 3 0.00
692 1 0.00
693 2 0.00
694 5 0.00
695 1 0.00
696 2 0.00
698 3 0.00
699 10 0.00
700 7 0.00
701 16 0.01
702 8 0.00
703 17 0.01
704 26 0.01
705 19 0.01
706 16 0.01
707 9 0.00
708 81 0.03
709 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (643 bp):
TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
TGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTT
AAAGTATACAAGACGATCCATTCCTTCGAACAATTTTCCAAACATTTCATGCTCAGGAAATCACA
TCATTTGGTCCAAATAGTTTGTCATTTTGTAACAAATTTGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTCTGAACTTGTCAAACTTTTACAAGTTCTT
TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTTGAACATTC
CATGCTCGAGAAATCGCATCATTTGGACCAAATAGTTTGTCATTTTGTAAAAACTTTTGGTCTTG
AATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCGAACTTTT
CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
AGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
Found at i:17766 original size:60 final size:60
Alignment explanation
Indices: 17673--17791 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 60
17663 AATTAAAAAC
* * * *
17673 TTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAAT
1 TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGACAAACTTCTGAACTTGTCAAAT
* * * *
17733 TTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTTAACTTGTCAAA
1 TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGACAAACTTCTGAACTTGTCAAA
17792 CTTTTTCAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (60 bp):
TTATTAATGTGAGAATTATTTCTCTCGTAGTTCTTGGACAAACTTCTGAACTTGTCAAAT
Found at i:17985 original size:276 final size:276
Alignment explanation
Indices: 17466--17973 Score: 687
Period size: 276 Copynumber: 1.8 Consensus size: 276
17456 CTTATCTACA
* * **
17466 TGAGAATTATTTCTCTCTTGGTTCATGGCCGAACTTCTGAACATTTCAAACTTTTTTGACTTCTT
1 TGAGAATTATTTCTCTCTTGGTTCATGGACAAACTTCTGAACATTTCAAACTTTTTCAACTTCTT
* ** * * * *
17531 TTATAACTTTGGTTCCTTAAAGTATTCGAGACGATCCATTTCTTCGAACAATTTTTCGATCAATC
66 TTAAAACTTCAGTTCCTTAAAGTATTCGAGACGATCCAATCCTTCGAACAAATTTTCGAACAATC
* * * * *
17596 CATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTTTTCATTTTTTAAAAAACTTTTGGTATT
131 CATGCTCGGGAAATCGCATCATTTGGTCCAAATAATTTATCATTTTGTAAAAAACTTTCGATATT
* * *
17661 TGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTT
196 TAAATTAAAAACTTATTAACGTGAGAATGGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTT
17726 GTCAAATTTATTTATG
261 GTCAAATTTATTTATG
* * *
17742 TGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTTAAC-TTGTCAAACTTTTTCAAGTTCT
1 TGAGAATTATTTCTCTCTTGGTTCATGGACAAACTTCTGAACATT-TCAAACTTTTTCAACTTCT
* * * ** *
17806 TTTAAAACTTCAGTTCCTTAAAGTATTC-AGGAGGATCGAATCCTTTGTGCAAATTTTCGAACAT
65 TTTAAAACTTCAGTTCCTTAAAGTATTCGA-GACGATCCAATCCTTCGAACAAATTTTCGAACAA
** * *
17870 TCCATGCTCGGGAAATCGCATCATTTGGTCCAAATGGTTTATCCTTTTGTAAAAAACTTTCGATC
129 TCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAATTTATCATTTTGTAAAAAACTTTCGATA
*
17935 TTTAAATTAAAAACTTATTTACGTGAGAATGGTTTCTCT
194 TTTAAATTAAAAACTTATTAACGTGAGAATGGTTTCTCT
17974 TTTGGTTCTT
Statistics
Matches: 197, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
275 3 0.02
276 194 0.98
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (276 bp):
TGAGAATTATTTCTCTCTTGGTTCATGGACAAACTTCTGAACATTTCAAACTTTTTCAACTTCTT
TTAAAACTTCAGTTCCTTAAAGTATTCGAGACGATCCAATCCTTCGAACAAATTTTCGAACAATC
CATGCTCGGGAAATCGCATCATTTGGTCCAAATAATTTATCATTTTGTAAAAAACTTTCGATATT
TAAATTAAAAACTTATTAACGTGAGAATGGTTTCTCTCGTAGTTCTTGGCCGAAGTTCTGAACTT
GTCAAATTTATTTATG
Found at i:18115 original size:216 final size:214
Alignment explanation
Indices: 17733--18360 Score: 738
Period size: 216 Copynumber: 2.9 Consensus size: 214
17723 CTTGTCAAAT
* * * *
17733 TTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTTAACTTGTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCTGAACTTGTCAAACTTTTT
* * * * * * *
17798 CAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAGGAGGATCGAATCCTTTGTGCAAATTTT
66 C-AGTTCTTTTATAACTTCAGTTCCTTAAAGTTTTCAAGACGATCGATTCCTTAGAG-AAATTTT
* * * *
17863 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATGGTTTATCCTTTTGTAAAAAACT
129 CGAACATTCCATCCTCGGGAAATCACATCATTTGGTCCAAATAGTTTATCATTTTGTAAAAAACT
17928 TTCGATCTTTAAATTAAAAAC
194 TTCGATCTTTAAATTAAAAAC
* * * * *
17949 TTATTTACGTGAGAATGGTTTCTCTTTTGGTTCTTGGTTGAACTT-TCGAACTTTTCAAACTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCT-GAACTTGTCAAACTTTT
* * * *
18013 TCATGTTCTTTTATAACTTCAATTCATTAAAGTTTTCAAGACGATCCATTCGTTAGAGAAAATTT
65 TCA-GTTCTTTTATAACTTCAGTTCCTTAAAGTTTTCAAGACGATCGATTCCTTAGAG-AAATTT
* * * * * *
18078 TCGAACATTCCATTCTCGGGAAATAACATCTTTTGGTCCAAATAATCTATCATTTTGTAAAGAAC
128 TCGAACATTCCATCCTCGGGAAATCACATCATTTGGTCCAAATAGTTTATCATTTTGTAAAAAAC
* * **
18143 TTTTGTTCTTTGGATTAAAAAC
193 TTTCGATCTTTAAATTAAAAAC
*
18165 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGATCGAACTTCTGAACTTGTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCTGAACTTGTCAAACTTTTT
* ** * *
18230 CCAATTCTTTTATAACTTTGGTTCCTTAAA-TTATTCAAGACGATCGATTCCTTCGAGCAATTTT
66 -CAGTTCTTTTATAACTTCAGTTCCTTAAAGTT-TTCAAGACGATCGATTCCTTAGAGAAATTTT
* * * * * * * *
18294 CCAAACATTCCAACCTTGGGAAATCACACCATTCGGTGCAAATAGTTTGTCGTTTTGTAAAAAAC
129 -CGAACATTCCATCCTCGGGAAATCACATCATTTGGTCCAAATAGTTTATCATTTTGTAAAAAAC
18359 TT
193 TT
18361 ATTTATGTGA
Statistics
Matches: 343, Mismatches: 63, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
215 10 0.03
216 330 0.96
217 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (214 bp):
TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCTGAACTTGTCAAACTTTTT
CAGTTCTTTTATAACTTCAGTTCCTTAAAGTTTTCAAGACGATCGATTCCTTAGAGAAATTTTCG
AACATTCCATCCTCGGGAAATCACATCATTTGGTCCAAATAGTTTATCATTTTGTAAAAAACTTT
CGATCTTTAAATTAAAAAC
Found at i:18168 original size:492 final size:491
Alignment explanation
Indices: 17244--18223 Score: 1304
Period size: 492 Copynumber: 2.0 Consensus size: 491
17234 TAAAAACTTT
* * * *
17244 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACATTTTCGA
1 TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTGAACTTGTCAAACATTTTCAA
* * * *
17309 GTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCGATTCCTTCCAGCAATTTTCAGA
66 GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAAGACGATCGAATCCTTCCAGCAATTTTCAGA
* * * * * *
17374 ATATTCCATTATTGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCCTTTAGTAAAAAATTTTC
131 ACATTCCATGATCGGGAAATCGCATCATTTGGTCCAAATAGTTTATCCTTTAGTAAAAAACTTTC
* * *
17439 GGTCTATGAATTAAAAACTTATCTACATGAGAATTATTTCTCTCTTGGTTCATGGCCGAACTTCT
196 GATCTATAAATTAAAAACTTATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCCGAACTTCT
*** * *
17504 GAACATTTCAAACTTTTTTGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCGAGACGATCCA
261 GAACATTTCAAACTTTTTTGA-TTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCCA
* * * ** *
17569 TTTCTTCGAACAATTTTTCGATCAATCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTT
325 TTTCTTAGAACAAATTTTCGAACAATCCATTCTCGGGAAATAACATCATTTGGTCCAAATAATCT
* *
17634 TTCATTTTTTAAAAAACTTTTGGTATTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCTC
390 ATCATTTTGTAAAAAACTTTTGGTATTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCTC
* *
17699 GTAGTTCTTGGCCGAAGTTCTGAACTTGTCAAATTTA
455 GTAGTTCTTGACCGAACTTCTGAACTTGTCAAATTTA
* *
17736 TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTTAACTTGTCAAACTTTTTCAA
1 TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTGAACTTGTCAAACATTTTCAA
* * ***
17801 GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAGGAGGATCGAATCCTTTGTGCAAATTTTC-G
66 GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAAGACGATCGAATCCTTCCAGC-AATTTTCAG
* * *
17865 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATGGTTTATCCTTTTGTAAAAAACTTT
130 AACATTCCATGATCGGGAAATCGCATCATTTGGTCCAAATAGTTTATCCTTTAGTAAAAAACTTT
* * * * * * **
17930 CGATCTTTAAATTAAAAACTTATTTACGTGAGAATGGTTTCTCTTTTGGTTCTTGGTTGAACTT-
195 CGATCTATAAATTAAAAACTTATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCCGAACTTC
* *
17994 TCGAACTTTTCAAACTTTTTCATG-TTCTTTTATAACTTCAATTCATTAAAGTTTTCAAGACGAT
260 T-GAACATTTCAAACTTTTT--TGATTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGAT
* *
18058 CCA-TTCGTTAGAGA-AAATTTTCGAACATTCCATTCTCGGGAAATAACATCTTTTGGTCCAAAT
322 CCATTTC-TTAGA-ACAAATTTTCGAACAATCCATTCTCGGGAAATAACATCATTTGGTCCAAAT
* * * * *
18121 AATCTATCATTTTGTAAAGAACTTTTGTTCTTTGGATTAAAAACTTATTTATGTGAGAATTGTTT
385 AATCTATCATTTTGTAAAAAACTTTTGGTATTTGAATTAAAAACTTATTAATGTGAGAATTGTTT
* * *
18186 CTCTCTTGGTTCTTGATCGAACTTCTGAACTTGTCAAA
450 CTCTCGTAGTTCTTGACCGAACTTCTGAACTTGTCAAA
18224 CTTTTTCCAA
Statistics
Matches: 420, Mismatches: 62, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
491 4 0.01
492 406 0.97
493 8 0.02
494 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (491 bp):
TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCTGAACTTGTCAAACATTTTCAA
GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAAGACGATCGAATCCTTCCAGCAATTTTCAGA
ACATTCCATGATCGGGAAATCGCATCATTTGGTCCAAATAGTTTATCCTTTAGTAAAAAACTTTC
GATCTATAAATTAAAAACTTATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCCGAACTTCT
GAACATTTCAAACTTTTTTGATTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCCAT
TTCTTAGAACAAATTTTCGAACAATCCATTCTCGGGAAATAACATCATTTGGTCCAAATAATCTA
TCATTTTGTAAAAAACTTTTGGTATTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCTCG
TAGTTCTTGACCGAACTTCTGAACTTGTCAAATTTA
Found at i:19752 original size:21 final size:21
Alignment explanation
Indices: 19726--19776 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
19716 AAAGGGTTGG
19726 TAATGTCACTGATCAGCTGTT
1 TAATGTCACTGATCAGCTGTT
19747 TAATGTCACTGATCAGCTGTT
1 TAATGTCACTGATCAGCTGTT
*
19768 TAACGTCAC
1 TAATGTCAC
19777 AGCAATATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (21 bp):
TAATGTCACTGATCAGCTGTT
Found at i:21683 original size:26 final size:26
Alignment explanation
Indices: 21641--21697 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
21631 GGATCCTCTT
* *
21641 ATGCAGCGATAACTCTGGACACATTC
1 ATGCAGCGATAACTCTGAACAAATTC
*
21667 ATGCATCGAT-ACTTCTGAACAAATTC
1 ATGCAGCGATAAC-TCTGAACAAATTC
*
21693 CTGCA
1 ATGCA
21698 ACGAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (26 bp):
ATGCAGCGATAACTCTGAACAAATTC
Found at i:22585 original size:87 final size:86
Alignment explanation
Indices: 22448--22614 Score: 289
Period size: 87 Copynumber: 1.9 Consensus size: 86
22438 AGTTGCAGTA
*
22448 GAGCAAGATGAAGCCACGCCAAACCTATCTTCCTGAAGTTGCAGTGAAGCAAATTAAAATAGTAG
1 GAGCAAGATGAAGCCACACCAAACCTATCTTCCTGAAGTTGCAGTGAAGCAAATTAAAATAGTAG
22513 CAAATCTTTATCTCCCTAATG
66 CAAATCTTTATCTCCCTAATG
* *
22534 GAGCAAGATGAAGCCACACCAAATTCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAGTA
1 GAGCAAGATGAAGCCACACCAAA-CCTATCTTCCTGAAGTTGCAGTGAAGCAAATTAAAATAGTA
*
22599 GTAAATCTTTATCTCC
65 GCAAATCTTTATCTCC
22615 TTGAAGTTGC
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 22 0.29
87 54 0.71
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (86 bp):
GAGCAAGATGAAGCCACACCAAACCTATCTTCCTGAAGTTGCAGTGAAGCAAATTAAAATAGTAG
CAAATCTTTATCTCCCTAATG
Found at i:22652 original size:87 final size:90
Alignment explanation
Indices: 22532--22831 Score: 216
Period size: 95 Copynumber: 3.2 Consensus size: 90
22522 ATCTCCCTAA
22532 TGGAGCAAGATGAAGCCACACCAAATTCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAG
1 TGGAGCAAGATGAAGCCACACC-AA----ATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAG
* *
22597 TAGTAAATCTTTATCTCCTTGAAGTTGCAG
61 TAGCAAATCTTTATCTCCCTGAAGTTGCAG
* * *
22627 TGGAGCAAGATGAAG-C-TA-CAAATCTTATATCCTTGAAGTTGCAAG-G-ATCGGATTAAAACT
1 TGGAGCAAGATGAAGCCACACCAAATC---T-TCC-TGAAGTTGC-AGTGAAGCAGATTAAAA-T
* * *
22687 AACATTG-ATAGATCTTTATCTCCCTGAAGTTGTAG
59 -A-GTAGCA-A-ATCTTTATCTCCCTGAAGTTGCAG
* * * * **
22722 TGGAGCAAGATAAAGTCACACCAAATCCTACCTTCCTGAAGTTGCAGTGAAACGGATTAAAGCAG
1 TGGAGCAAGATGAAGCCACACCAAA---T--CTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAG
* * *
22787 TAGCGAATCTTTATCTCCCTAAAGTTTCAG
61 TAGCAAATCTTTATCTCCCTGAAGTTGCAG
22817 TGGAGCAAGATGAAG
1 TGGAGCAAGATGAAG
22832 TTACAACATC
Statistics
Matches: 164, Mismatches: 19, Indels: 44
0.72 0.08 0.19
Matches are distributed among these distances:
87 3 0.02
90 1 0.01
91 15 0.09
92 12 0.07
93 5 0.03
94 4 0.02
95 86 0.52
96 4 0.02
97 4 0.02
98 14 0.09
99 13 0.08
100 1 0.01
101 1 0.01
103 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (90 bp):
TGGAGCAAGATGAAGCCACACCAAATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAGTAGCA
AATCTTTATCTCCCTGAAGTTGCAG
Found at i:22702 original size:95 final size:96
Alignment explanation
Indices: 22602--22915 Score: 288
Period size: 95 Copynumber: 3.2 Consensus size: 96
22592 AATAGTAGTA
* *
22602 AATCTTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAG-C-TA-CAAATCTTATATCCTTGAA
1 AATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCTTATATCCTTGAA
*
22664 GTTGCAAGGATCGGATTAAAACTAACATTGAT
66 GTTGCAAGGATCGGATTAAAACTAA-ATTGAC
* * *
22696 AGATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATAAAGTCACACCAAATCCTACCT-TCC-T
1 A-ATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCTTA--TATCCTT
* * * *
22759 GAAGTTGC-AGTGAAACGGATTAAAGC--AGTAG-C
63 GAAGTTGCAAG-G-ATCGGATTAAAACTAAATTGAC
* * *
22791 GAATCTTTATCTCCCTAAAGTTTCAGTGGAGCAAGATGAAGTTACAACATCAAATCTTATATCCT
1 -AATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAG-T-C-ACACCAAATCTTATATCCT
* *
22856 TGAACTTGCAAGGATTGGATTAAAACTAAAGTTGAC
62 TGAAGTTGCAAGGATCGGATTAAAACTAAA-TTGAC
* * *
22892 AAAT-ATTATATCCTTGAAGTTGCA
1 -AATCTTTATCTCCCTGAAGTTGCA
22916 AGGATCGAAT
Statistics
Matches: 173, Mismatches: 28, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
94 1 0.01
95 71 0.41
96 6 0.03
97 18 0.10
98 38 0.22
99 17 0.10
100 18 0.10
101 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (96 bp):
AATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCTTATATCCTTGAA
GTTGCAAGGATCGGATTAAAACTAAATTGAC
Found at i:22771 original size:190 final size:193
Alignment explanation
Indices: 22532--22884 Score: 514
Period size: 190 Copynumber: 1.8 Consensus size: 193
22522 ATCTCCCTAA
* * * * *
22532 TGGAGCAAGATGAAGCCACACCAAATTCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAATAG
1 TGGAGCAAGATAAAGCCACACCAAATCCTACCTTCCTGAAGTTGCAGTGAAACAGATTAAAACAG
* * * *
22597 TAGTAAATCTTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAG-C-TA-CAAATCTTATATCC
66 TAGCAAATCTTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGTCACATCAAATCTTATATCC
*
22659 TTGAAGTTGCAAGGATCGGATTAAAACTAACATTGATAGATCTTTATCTCCCTGAAGTTGTAG
131 TTGAACTTGCAAGGATCGGATTAAAACTAACATTGATAGATCTTTATCTCCCTGAAGTTGTAG
* * *
22722 TGGAGCAAGATAAAGTCACACCAAATCCTACCTTCCTGAAGTTGCAGTGAAACGGATTAAAGCAG
1 TGGAGCAAGATAAAGCCACACCAAATCCTACCTTCCTGAAGTTGCAGTGAAACAGATTAAAACAG
* *
22787 TAGCGAATCTTTATCTCCCTAAAGTTTCAGTGGAGCAAGATGAAGTTACAACATCAAATCTTATA
66 TAGCAAATCTTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAG-T-C-ACATCAAATCTTATA
*
22852 TCCTTGAACTTGCAAGGATTGGATTAAAACTAA
128 TCCTTGAACTTGCAAGGATCGGATTAAAACTAA
22885 AGTTGACAAA
Statistics
Matches: 141, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
190 97 0.69
193 1 0.01
195 1 0.01
196 42 0.30
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (193 bp):
TGGAGCAAGATAAAGCCACACCAAATCCTACCTTCCTGAAGTTGCAGTGAAACAGATTAAAACAG
TAGCAAATCTTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGTCACATCAAATCTTATATCC
TTGAACTTGCAAGGATCGGATTAAAACTAACATTGATAGATCTTTATCTCCCTGAAGTTGTAG
Found at i:23328 original size:13 final size:14
Alignment explanation
Indices: 23305--23353 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
23295 TGTCCGGGCC
23305 AACATAAATATAAA
1 AACATAAATATAAA
23319 AACA-AAATATAAA
1 AACATAAATATAAA
*
23332 CCAA-ATAAATTTAAA
1 --AACATAAATATAAA
23347 AAC-TAAA
1 AACATAAA
23354 AAACAAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
13 15 0.50
14 5 0.17
15 10 0.33
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.20
Consensus pattern (14 bp):
AACATAAATATAAA
Found at i:28500 original size:214 final size:214
Alignment explanation
Indices: 28072--28542 Score: 626
Period size: 214 Copynumber: 2.2 Consensus size: 214
28062 TGATCTACTG
*
28072 TTACGAGTTATTTTATAACTT-AGTTTCCTTAAAGTATTCAAGACGATCCATTCCATCGAGCAAT
1 TTACGAGTTATTTTATAACTTCAG-TTCCTTTAAGTATTCAAGACGATCCATTCCATCGAGCAAT
* *
28136 TTTCCGAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
65 TTTCCAAACATTCCATGCTCGGGAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* * * * ** *
28201 AACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGGATCATTTCTCTTGGTTCTTAGCCAAA
130 AACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATCATCTCTCTTCCTTCTTAGCAAAA
28266 CTTTTGAACTTGTTAAACTT
195 CTTTTGAACTTGTTAAACTT
* * * * *
28286 TTACGAGTTCTTTTATAACTTCAGTTCCTTTAAGTATTCAAGATGATCCATTCCTTCGAGTATTT
1 TTACGAGTTATTTTATAACTTCAGTTCCTTTAAGTATTCAAGACGATCCATTCCATCGAGCAATT
* * * *
28351 TTCCAAATATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
66 TTCCAAACATTCCATGCTCGGGAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * * ** * *
28416 ACTTTTGGTTTTTGGATTAAAAAACTTATTTACATGAGAATTGTCTCTCTTCCTTCTTTGTAAAA
131 ACTTTTGGTCTTTGAATT-AAAAACTTATTTACATAAGAATCATCTCTCTTCCTTCTTAGCAAAA
28481 CTTTTGAA-TT-TTCAAACTT
195 CTTTTGAACTTGTT-AAACTT
* *
28500 TTCCAAGTTATTTTATAACTTCAGTT-CTTTAAAGTATTCAAGA
1 TTACGAGTTATTTTATAACTTCAGTTCCTTT-AAGTATTCAAGA
28543 AGATTGTAAT
Statistics
Matches: 224, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
213 6 0.03
214 174 0.78
215 44 0.20
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (214 bp):
TTACGAGTTATTTTATAACTTCAGTTCCTTTAAGTATTCAAGACGATCCATTCCATCGAGCAATT
TTCCAAACATTCCATGCTCGGGAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
ACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATCATCTCTCTTCCTTCTTAGCAAAAC
TTTTGAACTTGTTAAACTT
Found at i:30051 original size:25 final size:26
Alignment explanation
Indices: 30023--30076 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
30013 ATTAAAGGAC
*
30023 TAAAGAATAAAATTAA-CCAAATTAT
1 TAAAGAATAAAATAAACCCAAATTAT
* *
30048 TAAATAATTAAATAAACCCAAATTAT
1 TAAAGAATAAAATAAACCCAAATTAT
30074 TAA
1 TAA
30077 TGAAATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (26 bp):
TAAAGAATAAAATAAACCCAAATTAT
Found at i:36650 original size:7 final size:7
Alignment explanation
Indices: 36638--36664 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36628 TCTTGATGAT
36638 TTCTTCA
1 TTCTTCA
36645 TTCTTCA
1 TTCTTCA
36652 TTCTTCA
1 TTCTTCA
36659 TTCTTC
1 TTCTTC
36665 TATTTATAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.30, G:0.00, T:0.59
Consensus pattern (7 bp):
TTCTTCA
Found at i:47135 original size:31 final size:31
Alignment explanation
Indices: 47099--47161 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
47089 GATCAAAACT
47099 AACAATATTGTTAGGATTTCTCTTTGTAGAC
1 AACAATATTGTTAGGATTTCTCTTTGTAGAC
47130 AACAATATTGTTAGGATTTCTCTTTGTAGAC
1 AACAATATTGTTAGGATTTCTCTTTGTAGAC
47161 A
1 A
47162 TAAACACTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (31 bp):
AACAATATTGTTAGGATTTCTCTTTGTAGAC
Found at i:47532 original size:24 final size:24
Alignment explanation
Indices: 47500--47545 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
47490 ACAGGTTAAG
*
47500 AATATAAAATGTCAGTGCAAATGA
1 AATATAAAATGTCAGAGCAAATGA
*
47524 AATATAAAATGTTAGAGCAAAT
1 AATATAAAATGTCAGAGCAAAT
47546 TAATAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (24 bp):
AATATAAAATGTCAGAGCAAATGA
Found at i:48684 original size:11 final size:11
Alignment explanation
Indices: 48668--48692 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48658 ACAACAACAT
48668 TAGTAGCATAA
1 TAGTAGCATAA
48679 TAGTAGCATAA
1 TAGTAGCATAA
48690 TAG
1 TAG
48693 AGATAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (11 bp):
TAGTAGCATAA
Found at i:49239 original size:216 final size:214
Alignment explanation
Indices: 48847--49764 Score: 1026
Period size: 216 Copynumber: 4.3 Consensus size: 214
48837 AATGCTATCA
* *
48847 CCGAACTTCCGAACTTGTT-AAACATTTTT-GAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATT
1 CCGAACTTCCGAACTT-TTCAAAC-TTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
48910 CAAGAGGATCGATTCCTTCGAGCAAATTTTTGGACATTCCATGCTCGGGAAATTGCATCATTTGG
64 CAAGACGATCGATTCCTTCGAGC-AATTTTTGAACATTCCATTCTCGAGAAATCGCATCATTTGG
* * * ** **
48975 TCAAAATAGTTTGTCCTTTTGATAAAAACTTTAAATCTTTGAATTAAAAACTTATTTACATGAGA
128 TCCAAATAATTTGTCATTTTG-TAAAAACTTTCGATCTTTGAATTAAAAACTTATTTATGTGAGA
*
49040 ATGATTTCTCTCTTGGTTCTTGG
192 ATGATTTCTCTCTTTGTTCTTGG
** * *
49063 CCGAACTTTTGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGATTTCTTAAAGTATTCA
1 CCGAACTTCCGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
49128 AGACGATTC-ATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC-TTATGG
66 AGACGA-TCGATTCCTTCGAGCAATTTTT-GAACATTCCATTCTCGAGAAATCGCATCATT-TGG
* * * *
49191 TCCAAATAATATGTCATTTTGTAAAGAACTGTT-GGTCTTTGGATTAAAAACTTATTTATTTGAG
128 TCCAAATAATTTGTCATTTTGTAAA-AACT-TTCGATCTTTGAATTAAAAACTTATTTATGTGAG
* *
49255 AA--ATTTTTCTCTTCGTTCTTGG
191 AATGATTTCTCTCTTTGTTCTTGG
* * * *
49277 CCAAACTTTCGAACTTGTCAAACTTTTTCGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCA
1 CCGAACTTCCGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* ** ** * * *
49342 AGATGATCGATTCCTTC-AGGCAATTTTCCAAACATTCCAGCCTCGGGAAATCGGACCATTTGGT
66 AGACGATCGATTCCTTCGA-GCAATTTT-TGAACATTCCATTCTCGAGAAATCGCATCATTTGGT
* * * * * *
49406 CTAAACAGTTTGTCCTTTTGTAAAAAACTTTCGACCTTTGAATTAAAAGCTTATTTATGTGAGAA
129 CCAAATAATTTGTCATTTTGT-AAAAACTTTCGATCTTTGAATTAAAAACTTATTTATGTGAGAA
* *
49471 TTATTTCTTTCTTTGTTCTTGG
193 TGATTTCTCTCTTTGTTCTTGG
* * * *
49493 CTGAACTTCCGAACTTTTTAAACTTTTTCGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATTTA
1 CCGAACTTCCGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* ** ** * * * *
49558 AGACGATCCATTATTTCGAATAATTTGTTGAAAATTCCATTATTGAGAAATCACATCATTTGGTC
66 AGACGATCGATTCCTTCGAGCAATTT-TTGAACATTCCATTCTCGAGAAATCGCATCATTTGGTC
* * * *
49623 CAAAATAATCTGTCATTTTGTAAACAACTTTCGGTCATTGGATTAAAAACTTATTTATGTGAGAA
130 C-AAATAATTTGTCATTTTGTAAA-AACTTTCGATCTTTGAATTAAAAACTTATTTATGTGAGAA
49688 TTG-TTTCTCTCTTTGTTCTTGG
193 -TGATTTCTCTCTTTGTTCTTGG
* * * * *
49710 CCGAACTTCCGAAATTTTCAAAATTTTTTGAGTTCTTTCACAACTTCGGTTCCTT
1 CCGAACTTCCGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTT
49765 TCCTTCAACC
Statistics
Matches: 588, Mismatches: 94, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
213 5 0.01
214 172 0.29
215 25 0.04
216 264 0.45
217 121 0.21
218 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (214 bp):
CCGAACTTCCGAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
AGACGATCGATTCCTTCGAGCAATTTTTGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCC
AAATAATTTGTCATTTTGTAAAAACTTTCGATCTTTGAATTAAAAACTTATTTATGTGAGAATGA
TTTCTCTCTTTGTTCTTGG
Found at i:50147 original size:628 final size:625
Alignment explanation
Indices: 49138--50268 Score: 1563
Period size: 628 Copynumber: 1.8 Consensus size: 625
49128 AGACGATTCA
* * *
49138 TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATCTTATGGTCCAAATAATAT
1 TTCCTTCAACCAATTTTTCAAACATTCCATTCTCGAGAAATCGCATCTTATGGTCCAAATAATAT
* * * * *
49203 GTCATTTTGTAAAGAACTGTTGGTCTTTGGATTAAAAACTTATTTATTTGAGAAATTTTTCTCTT
66 GTCATTTTGTAAACAACTGTTAGTCTTCGGATTAAAAACTAATTTATGTGAGAAATTTTTCTCTT
* * * *
49268 CGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTTCGAGTTTTTTTATAACTTCGGTTCCTTA
131 CGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTTCGAGTTATTTTAAAACTTCGGTTCCTTA
* * * *
49333 AAGTATTCAAGATGATCGATTCCTTCAGGCAATTTTCCAAACATTCCAGCCTCGGGAAATCGGAC
196 AAGTATTCAAGAGGATCAATTCCTTCAGGCAATTTTCCAAACATTCCAGCCTCGGAAAATCGCAC
* **
49398 CATTTGGTCTAAACAGTTTGTCCTTTTGTAAAAAACTTTCGACCTTTGAATTAAAAGCTTATTTA
261 CATTTGGTCCAAACAGTTTGTCCTTTTGTAAAAAACTTTCGACCTTTGAATTAAAAAATTATTTA
** * * * * * *
49463 TGTGAGAATTATTTCTTTCTTTGTTCTTGGCTGAACTTCCGAACTTTTTAAACTTTTTCGAGTTC
326 CCTGAGAATGATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTTCAAAC-TTTTCAAGTTC
* * * * *
49528 TTTTATAGCTTCGGTTCCTTAAAGTATTTAAGACGATCCATTATTTCGAATAA-TTTGTTGAAAA
390 TTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTACTTCGAACAACTTT-TCGAAAA
* *
49592 TTCCATTATTGAGAAATCACATCATTTGGTCCAAAATAATCTGTC-ATTTTGTAAACAACTTTCG
454 TTACATTATCGAGAAATCACATCATTTGGTCC-AAATAATCTGTCAATTTTGTAAACAACTTTCG
49656 GTCATTGGATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTTCCG
518 GTCATTGGATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTTCCG
49721 AAATTTTCAAAATTTTTTGAGTTCTTTCACAACTTCGGTTCCT
583 AAATTTTCAAAATTTTTTGAGTTCTTTCACAACTTCGGTTCCT
* * *
49764 TTCCTTCAACCAATTTTTCAAACATTCCATTCTCGAGAAATTGTATCATT-TGGTCCAAATAATT
1 TTCCTTCAACCAATTTTTCAAACATTCCATTCTCGAGAAATCGCATC-TTATGGTCCAAATAATA
* *
49828 TGTCATTTTGTAAACAACTTTTAGTCTTCGGATTAAAAACTAATTTATGTGAGAATTGTTTCTCT
65 TGTCATTTTGTAAACAACTGTTAGTCTTCGGATTAAAAACTAATTTATGTGAGAAAT-TTT-TCT
* *
49893 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTTCGAGTTATTTTAAAACTTCGGTTCC
128 CTTCGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTTCGAGTTATTTTAAAACTTCGGTTCC
* * ** *
49958 TTAAAGTATTCAAGAGGATCAATTCCTT-TGAGCAATTTTTCGTACATTCCTTG-CTC-GAAAAT
193 TTAAAGTATTCAAGAGGATCAATTCCTTCAG-GCAATTTTCCAAACATTCC-AGCCTCGGAAAA-
* * * * **
50020 TCGCATCATTTGTTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAAT
255 TCGCACCATTTGGTCCAAACAGTTTGTCCTTTTGTAAAAAACTTTCGACCTTTGAATTAAAAAAT
* *
50085 TATTTACCTGAGAATGGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACTTTTCA
320 TATTTACCTGAGAATGATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTTCAAACTTTTCA
* * * * *
50150 AGTTCTTTTATAACTTTGTTTCCTTAAAGTATTAAAGATGATCCATTCCTTCGAGCAACTTTTCG
385 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTACTTCGAACAACTTTTCG
* * * * *
50215 AACATTACATTCTCGGGAAATCGCATCTTTTGGTCCAAATAATCTGTCAATTTT
450 AAAATTACATTATCGAGAAATCACATCATTTGGTCCAAATAATCTGTCAATTTT
50269 TCGCTCTTGG
Statistics
Matches: 433, Mismatches: 64, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
626 117 0.27
627 100 0.23
628 215 0.50
629 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (625 bp):
TTCCTTCAACCAATTTTTCAAACATTCCATTCTCGAGAAATCGCATCTTATGGTCCAAATAATAT
GTCATTTTGTAAACAACTGTTAGTCTTCGGATTAAAAACTAATTTATGTGAGAAATTTTTCTCTT
CGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTTCGAGTTATTTTAAAACTTCGGTTCCTTA
AAGTATTCAAGAGGATCAATTCCTTCAGGCAATTTTCCAAACATTCCAGCCTCGGAAAATCGCAC
CATTTGGTCCAAACAGTTTGTCCTTTTGTAAAAAACTTTCGACCTTTGAATTAAAAAATTATTTA
CCTGAGAATGATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTTCAAACTTTTCAAGTTCT
TTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTACTTCGAACAACTTTTCGAAAATT
ACATTATCGAGAAATCACATCATTTGGTCCAAATAATCTGTCAATTTTGTAAACAACTTTCGGTC
ATTGGATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTTCCGAAA
TTTTCAAAATTTTTTGAGTTCTTTCACAACTTCGGTTCCT
Found at i:50416 original size:166 final size:165
Alignment explanation
Indices: 50102--50421 Score: 410
Period size: 166 Copynumber: 1.9 Consensus size: 165
50092 CTGAGAATGG
* ** **
50102 TTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACTTTTCAAGTTCTTTTATAACTTT
1 TTTCGCTCTTGGTTCTTGGCCGAACTTTCGAACTTGACAAACTTTTCAAGTTCTTTTATAACTCC
* * * * *
50167 GTTTCCTTAAAGTATTAAAGATGATCCATTCCTTCGAGCAACTTTTCGAACATTACATTCTCGGG
66 GATTCCTTAAAGTATTAAAGATGATCCATCCCTTCGAACAACTTTTCAAACATTACATTCTCAGG
* *
50232 AAATCGCATCTTTTGGTCCAAATAATCTGTCAATT
131 AAATCGCACCATTTGGTCCAAATAATCTGTCAATT
**
50267 TTTCGCTCTTGGTTCTTGGCCGAACTTTCGAACTTGACAAACTTTTTCGTGTTCTTTTATAACTC
1 TTTCGCTCTTGGTTCTTGGCCGAACTTTCGAACTTGACAAAC-TTTTCAAGTTCTTTTATAACTC
* * * * ** *
50332 CGATTCTTTAAATTATTCAAGATTATTGATCCCTTCGAACAATTTTTCAAACATT-CTAGTT-TC
65 CGATTCCTTAAAGTATTAAAGATGATCCATCCCTTCGAACAACTTTTCAAACATTAC-A-TTCTC
50395 AGGAAATCGCACCATTTGGTCCAAATA
128 AGGAAATCGCACCATTTGGTCCAAATA
50422 GTTTGTCCTT
Statistics
Matches: 131, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
165 40 0.31
166 89 0.68
167 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (165 bp):
TTTCGCTCTTGGTTCTTGGCCGAACTTTCGAACTTGACAAACTTTTCAAGTTCTTTTATAACTCC
GATTCCTTAAAGTATTAAAGATGATCCATCCCTTCGAACAACTTTTCAAACATTACATTCTCAGG
AAATCGCACCATTTGGTCCAAATAATCTGTCAATT
Found at i:50652 original size:216 final size:215
Alignment explanation
Indices: 50263--50927 Score: 707
Period size: 216 Copynumber: 3.1 Consensus size: 215
50253 ATAATCTGTC
* * * *
50263 AATT-TTTCGCTCTTGGTTCTTGGCCGAACTTTCGAACTTGACAAACTTTTTCGTGTTCTTTTAT
1 AATTGTTTCTCTCCTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTAT
* * * ** * *
50327 AACTCCGATTCTTTAAATTATTCAAGATTATTG-ATCCCTTCGAA-CAATTTTTCAAACATTCTA
66 AACTTCGATTCCTTAAAGTATTCAAGACCA-TGCATTCCTT-GAAGCAATTTTTCGAACATT-TA
* * * *
50390 GTT-TCAGGAAATCGCACCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTTGGTCTTT
128 -TTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* **
50454 AAATTAAAAACTTATTTATGTGAG
192 GAATTAAAAACTTATTTACATGAG
* * *
50478 AATTGTTTCTCTCCTGGTTCTTGGCCGAACTTTTGAACTTTTCAAACTTTTTCAAGTTCTTTTAT
1 AATTGTTTCTCTCCTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTAT
* *
50543 AACTTCGATTCCTTAAAGTATTCAAGACGATGCATTCCTTGAAGCAATTTTTTGAACATTTGATT
66 AACTTCGATTCCTTAAAGTATTCAAGACCATGCATTCCTTGAAGCAATTTTTCGAACATTT-ATT
* * * * * * * *
50608 CTCGGGAAATTGCATCATTTTGTCCAAATAATATGTTATTTTGTAAACAATTTTTGGTCATTGGA
130 CTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
50673 TTAAAAACTTATTTACATGAG
195 TTAAAAACTTATTTACATGAG
* ** ** * *
50694 AATTATTTCTCTATTGGTTCTTAACCGAACTTCCGAAATTGTCAAACTTTTAT-GAGTTCTTTT-
1 AATTGTTTCTCTCCTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTT-TCGAGTTCTTTTA
* * * * ** * *
50757 TAAGTTAGGA-TCCTTAAAGTATTCAAGACCTTCCATTCCTTCTAGTAATTTTTCGAACCTTTCA
65 TAACTT-CGATTCCTTAAAGTATTCAAGACCATGCATTCCTTGAAGCAATTTTTCGAACATTT-A
* * * * *
50821 TGCTTGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTCGTAAACAGCTTTT-GTCTTTG
128 TTCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* *
50885 AATTAAAGACTTATTTACATGTG
193 AATTAAAAACTTATTTACATGAG
**
50908 AATTGCCTCTCTCCTGGTTC
1 AATTGTTTCTCTCCTGGTTC
50928 CTTAAAGTAT
Statistics
Matches: 372, Mismatches: 71, Indels: 15
0.81 0.16 0.03
Matches are distributed among these distances:
214 41 0.11
215 108 0.29
216 222 0.60
217 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (215 bp):
AATTGTTTCTCTCCTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTAT
AACTTCGATTCCTTAAAGTATTCAAGACCATGCATTCCTTGAAGCAATTTTTCGAACATTTATTC
TCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
TAAAAACTTATTTACATGAG
Found at i:51331 original size:216 final size:215
Alignment explanation
Indices: 50923--60323 Score: 5245
Period size: 216 Copynumber: 43.5 Consensus size: 215
50913 CCTCTCTCCT
*
50923 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAGCATTCCATGT-TCG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCAT-TCTCG
* * * * * * * *
50986 AGAAATCGCATCATTTCGACGAAGTAGTTGGTTATTTTGTAAACAAATTTTAGTCTTTGAATTAA
64 -GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* ** * * * * * * * *
51051 AAACTTATTAACATTAGAATTGTTTTTCTCTTGGTTCCTAGTCGAACTTCCAAACTTTTCAAACT
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACT
* * *
51116 TTTTTGAGTTCTATTATAGCTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * * * **
51139 GATTCCTTACAGTATTCAAGAAGATCCATTCCTTCGAGAAATTTTTCGAACATTCCAACCTCAGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* **
51204 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTAAAATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * *
51269 ACTTAGTTT-CGTGAGAATGGTTTATC-CATTGGTTTTTGACTGAACTTTCGAACTTGTCAAACT
130 ACTTA-TTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACT
* *
51332 TTTTCGAGTTCCTTTATAACTTT
193 TTTTCGAGTTCTTTTATAACTTC
* * * * **
51355 GGCTACC-TAAAGTATTCAAGACGATCGATTCCTTCGAGCAA-TTTTAGAAACATTCTAGCCTCG
1 GG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG-AACATTCCATTCTC-
* * * * *
51418 GGAAATCGCACCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAA
63 GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * *
51483 AAACTTATTTATATGAGAATTGTTTGTCCCCTGGTTCTTGGCCAAAC-TTCTGAACTTTTCAAAC
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAAC
* * *
51547 TTTTTTGAGTTCTTTTACAACATC
192 TTTTTCGAGTTCTTTTATAACTTC
* ** *
51571 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTAAAACAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * *
51636 AAATCACATCATTTGGTCCAAGTAGTCTGTC-TTTTAGAAAATAACTTTTGGTCTTTCG-ATTAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTT-GTAAACAACTTTTGGTCTTT-GAATTAA
* * * * * * * *
51699 AAACTTCTTTACGTGAGAATGGTTTCTCTCTTGGTTGTTGGCCGAACATCCAAACTAGTCAAACT
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACT
*
51764 TTTTTGAGTTCTTTTATAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * * * * * * **
51787 GGTTGCTTAAAGTATTCAAGATGATCGAGTCCTTCGAGCAATTTTCCAAACATTCTAGCCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
51852 AAATCGCACCATTTGGTCAAAATAGTTTGTTC-TTTTGTAAAAAACATTCGGTCTTTAAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTG-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** *
51916 AACTTATTTATGTGAGAATTGTTTCTCACTTGGTTCTTGGTGGAACTTCCGAACATT-TCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTGTCAAACT
*
51980 ATTTCGAGTTCTTTTATAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * ** **
52003 GGTTCCTTAAAGTATTCAAGACTATCCATTCATTCGAGCAATTTTTCGAACATTTGATTCTCAAT
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
52068 AAATTGCATCATTTGGTCCAAATAATCTGTTATTTTGTAAACAACTTTTGTTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * * * *
52133 ACTTATTTACATGAGAATTATTTCTCGCTTGATTCTTAGCCGAACTTTCGAACTTGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
*
52198 TACGAGTTCTTTT-TAACTTTC
195 TTCGAGTTCTTTTATAAC-TTC
* * * * *
52219 -ATTCCTTAAAGTATTCAAGACGATCCATTCCTTCTAACAATTTTTCGAACATTCCATGCTCTAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * ** *
52283 AAATCGCAT-TTTTGGTCCAAATAGTTTTTCAGTTCATAAACAACTTTTGGTCTTTGAATTGAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
52347 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGCTGAAC-ATCTGAA-TATGTCAAACT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACT-TGTCAAACT
* *
52410 TTTACAAGTTCTTTTATAACTGT-
193 TTTTCGAGTTCTTTTATAACT-TC
* * * * * * * *
52433 GG-T-CTT--TGAATTAAAGACGATCAATTCCTTCAAGTAA-TTTTCTAAGCATTCCATGCTCGA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATTCTCG-
* * * *
52493 GAAACCGCATCATTTCGACCAAGA-AGTTTGTCATTTTGTAAACAACTTTTGCTCTTTGAATTAA
64 GAAATCGCATCATTTGGTCCAA-ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * ** * * ** * *
52557 AAACTAATTAAAATTATAATT-TTTCTCTCTTGGTTCTTGGTTGAAC-TTCTAAACTTTTCAAAC
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAAC
** * * * *
52620 TTTTTCGTCTACTATTATAGCTTT
192 TTTTTCGAGTTCTTTTATAACTTC
* * * *
52644 GATTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAA----T------TTCCATGCTCGAT
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * *
52699 AAATCGCATCAATTGGTCCAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTAGAATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
52764 A-TTATTTACGTGAGAATGGCTTCTCCCTTGGTTCTTGACAGAACTTTCGAACATGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* * * *
52828 TACAAATTATTTTATAACTTC
195 TTCGAGTTCTTTTATAACTTC
* * * *
52849 GGTCCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAACTTTCCAAACATT-C-TTGCTCAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATT-CTC-G
* * * * * * * *
52912 GAAATAGGATCATTTGGTTCC-AATATTTTATCCTTTTATAAACAACTTTCGGTCTCTGAATTAA
64 GAAATCGCATCATTTGG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * *
52976 AATCTTATCTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTTAAACT
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACT
* *
53041 TTTTCTAGTTATTTTATAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * ** * *
53064 AGTTCCTTAAAGTATTCAACACGATTGATTCCTTCGAGCAATTTTTCGAACATCCCATTCTCCGA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCT-CGG
* * * * * *
53129 AAATCGTATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * **
53194 ACTTATTTAAT-CGAGAA-TGATTTCTCTCTTGGTTCTAGGCCGAACTCCCGAACTAT-TCAAAC
130 ACTTATTT-ATGTGAGAATTG-TTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACT-TGTCAAAC
* *
53256 TTTTTTGAGTTATTTTATAACATT-
192 TTTTTCGAGTTCTTTTATAAC-TTC
* * * * *
53280 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTTGAACTTTTCATTCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * *
53345 AAATCGCATCATTTGGTCCAAATAATCTATCATTTTGTAAACAACTCTTGGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * *
53410 ATTTATTTATGTGAGAATTG-TT-TCTCTTGCTTCTTGGCCGAAC-TTCTGAACTTATAAAAAAT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGT-CAAACT
* *
53472 TTTT-GGGTTCTCTTATAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * * * * * * * ** *
53494 GGTT-CTTAAAGTATTTATGACAATCGATTCCTTCGAGCAATTATCCAAATATTTAATGCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * * *
53558 AAATTGCATAATTTGGTCCAAATAGTTTGTCCTTTCGTAAAAGAACTTTTAGTCTTTGAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * * ** *
53623 AACTTATTTACGTGAGAATTATTTATGTCTTGGTTCTTGGCTAAACTTTCGAACTTTTCAAACTT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTT
*
53688 TTTTGAGTTCTTTTATAACTTC
194 TTTCGAGTTCTTTTATAACTTC
* *
53710 GGTTCCTTAAAGCATTCAAGACGAT-C-TT-CTTCGAACAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * *
53772 AAATCGCATCATTTGATCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * * * *
53837 ACTTATTTATATGAGAAATCTTTCTCTCTTGGTTATTAGTCGAACTTTCGAAATTTTCAAAAATT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTC-AAACTT
** * *
53902 TTT-GAGTTCTAATACATCTTC
194 TTTCGAGTTCTTTTATAACTTC
* **
53923 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAAACATTAAATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * * *
53987 ATATCGTATCATTTGGTCCAAATAATCTT-TCATTTTGTAAACAACTTTTAGTATTTGGACTAAA
65 AAATCGCATCATTTGGTCCAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
54051 AACTTATTTATGTGAGAATTGTTTCT-TCTTGGTTCTTGGACAAACTTTCAAACTTGTGAAACTT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTT
54115 TTTCGAGTTCTTTTGA-AACTTC
194 TTTCGAGTTCTTTT-ATAACTTC
* * * * * * *
54137 AGTTCCTTAAAGCATTCAAGAGGATCGAATCCTTCGAGCAATTTGTCGAACATTCCATGCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * *
54202 AAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTCAATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * *
54267 ACTTATTTATGTGAGAATGGTTTCTCTCTTGGTTCTTCGTCGAACTTTCGAACTTTTCAAGCTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* *
54332 TTCGAGTTCCTTTATAACTTT
195 TTCGAGTTCTTTTATAACTTC
*
54353 GGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
** * * * * *
54418 AAATAACATCTTTTGGTCCAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* **
54483 ACTTATTTATGTGAGAATTTTTTCTCTCTTGGTTCTTGGTTGAACTTTCGAAC-TGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
54547 TTCGAGTTCTTTTATAACTTC
195 TTCGAGTTCTTTTATAACTTC
* ** * * **
54568 GGTTCCTTAAAATATTCAAGACGATTGATTCCTTCGAGCAATTTTCCAAACATTCCAGCCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * * ***
54633 AAATTGCACCATTTGGTCAAAATA-TTTGTCCTTTTGTAAAAAAACTTTCAATCTTTGAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * * *
54697 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCGAAGTT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTT
* *
54762 TTTCGAGTTATTTTAT-ACTTT
194 TTTCGAGTTCTTTTATAACTTC
* * * ** * *
54783 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTTGAACCGTTTTTCAAAAATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
54848 AAATCGCATCATTTAGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGATCTTTGGACTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
54913 ACTTAATTATGTGAG-ATTGTTTCTCTCTTGGTTCTTAGCCGAAC-TTCTGAAATT-TCCAAAAT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGT-CAAACT
* *
54975 TTTTTGAGTTCTTTTACAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
** * * * *
54998 AATTCCTTAAAATAATCAAGAC-ATTCCATTCCTTAGAGTAATTTTTCGAACATT-CATTCTCGA
1 GGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-
* * * * * * * *
55061 GAAATCGCATCATTTGGTCAAAATAATCTGT-ATTTTTGTAAACAACTTTTAGT-ATTCAA-GAC
64 GAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * ** ** * * * * *** *
55123 AATC-GATTCCT-TCGAGTAA-T-TTTCTGAACAT--TCCAT-GCTTGAAAAATCGCATCATTTG
128 AAACTTATTTATGT-GAG-AATTGTTTCT-CTCTTGGTTCTTGGC-CGAACTTTCG-A--ACTT-
* ** *
55181 GTCCAAA-TAGTTT-GTCTT-TTTGTAACAAACTTTC
185 GT-CAAACT-TTTTCGAGTTCTTT-T-A-TAAC-TTC
** ** *** * *** ***
55215 GGTCTTTGAATTAAAAAATTACTTATATGA-GAGTGGTTTCTCTCTTG-GTTCTTGGCCGAAC-T
1 GG---TT-CCTTAAAGTATT-C--A-A-GACGA-TCCATTC-CT-TCGAGCAATTTTTCGAACAT
* * * * * * * * * *
55277 TCCAAACTTTTC-CAACTTTTTCG-AGTTCATTT-AT--AACTTCGTTTCCTTAAAGTATT-CAA
54 TCC--A-TTCTCGGAA----ATCGCA--TCATTTGGTCCAA-ATAGTTT--GT-CA-TTTTGTAA
** * * ** * * * *
55336 GACAATCCATT--CCTTCGAGCAATTTTTCAAAC--ATTCCACTCTCGA-AA--ATCTCATCAT-
105 -ACAA-CTTTTGGTCTT--TG-AA--TTAAAAACTTATT-TA-TGT-GAGAATTGTTTC-TC-TC
* **** * ** * * *
55393 TTGGTAC---AAATAATCTGTC-ATTTTGTAAAGAAC-TTTT-G-GTCTTTGGTTTAAAAACTT-
158 TTGGTTCTTGGCCGAA-CTTTCGAACTTGT-CA-AACTTTTTCGAGT-TCT--TTT-ATAACTTC
* ** *** * * * * * * *
55450 -ATTTATGTGAGAATTGTTTATTTTGGTTCTTG-GCCGA-ACTTTCGAGC---TTGTCAAACTTT
1 GGTTCCT-T-A-AA--G--TATTCAAG-AC--GATCC-ATTCCTTCGAGCAATTTTTCGAAC--A
* *** * ** * ** * * *
55509 TTCAACTTCTTTTATAACTTTGTTTCCTTAAAATATTCAAGACGATCAATTCCTTCGAGCAATTT
53 TTCCA-TTCTCGGA-AA--TCGCATCATT----TGGTCCA-A--AT--AGT--TT-G-TC-ATTT
* ***** * * * * * * *
55574 TCTAAAC-A-TTCCAACCTTGGAA--AAATAGCAC-CATTT-GGTCCAAAATAGTTTGTC-CTT-
100 TGTAAACAACTTTTGGTCTTTGAATTAAA-A--ACTTATTTATGT-GAGAATTGTTTCTCTCTTG
* **** * * * * *
55631 -TT-GT-AAAAAACTTTC--ACTCTTTAAAAAACTTATTTATGTGAGAATTGTTTCTCT--CTT-
161 GTTCTTGGCCGAACTTTCGAACT-TGT--CAAAC-T-TTT-T-CGAG--TTCTTT-TATAACTTC
** * ** * ** * * ** *
55688 GGTT-CTTAGCTGAACTTCCAA-ACTTTTCAATATTTTTTGAG--TTCTTTTATAACTTTGGTTC
1 GGTTCCTTA-AAGTA-TT-CAAGAC-GATCCAT-TCCTTCGAGCAAT-TTTTCGAAC----ATTC
*** * ** ** * *
55749 C-TTAAAGTAATAAAGACGATCCATTTCTTGGAGCAACT--TTTCGAACATTCGATTCTTGGGAA
56 CATTCTCGGAA-ATCG-C-AT-CA--T-TTGGTCCAAATAGTTT-G-----TC-ATT-TT-GTAA
* * * * * ** * * *** *
55811 ATTGCATCATTTGGTC---CAAATAATATGTTATTT-TGTAAACAACTT-TTGGACT-TTGG--A
105 A---CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGT-GAGAA-TTGTTTCTCTCTTGGTTC
*** ** * ** * **
55868 TT--AAAAACTTAT-TTACGTGAGAATTA-TTTCTCTCTTG-GTTCTTAGTCGAACTTC
165 TTGGCCGAACTT-TCGAACTTGTCAA--ACTTT-T-TC--GAGTTCTT-TTATAACTTC
**** * * * ** * ** * * * * * *
55922 CAAACTTGTCAAACT-TTTATTA-GTTCTTTTTAACTTTG-GTTCCTTAAAGTGTTCAAGACAAT
1 GGTTCCT-T-AAAGTATTCAAGACGATC-CATT-CCTTCGAG---C---AATTTTTCGA-ACATT
* * * * * * * **
55984 CCACTCCTTCTAGCAATTTTC-CGAACATTCCATGCTCGAGAA-A--TTGCATCAATAGGTCCGA
55 CCA----TTCTCGGAA--ATCGC-ATCATT---TGGTCCA-AATAGTTTG--TCATTTTGT---A
*** * * ** * * *
56045 ATAGTTGGTCATTTTGTAAATAACTTTTGGTATTTGAATTAAAGGTTTATTTACT-TGAGAACTA
104 A-A---CAAC-TTTTG---GT--C-TTT-G-AATT-AA--AAACTTAT--TTA-TGTGAGAATTG
* * * * * * * * *
56109 TTTCTCTCTTGGCTCTCGGCTGAAC-ATCTAAACATGTCAAACTTTTACAAGGTT-TTTTGTAAC
150 TTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTTTTTCGA-GTTCTTTTATAAC
*
56172 TTT
213 TTC
* * * * * * **
56175 GGTTCTTTAAAGTATTCAAGATGATCCATTCCTTCGAG-AAATTTTCTGACCATTTCATGCTAAA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCT-CG
* * ***** * * **
56239 AAAATCACATCATCCCAACCAAGTAGTTTGTTA-TTT-TAAACAACTTTTACTCTTTGAATTAAA
64 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** * * ** * *
56302 AACTTATTAACATTAGAATTCTTTCTCTCTTGGTTCTTGGTTGAACTTCCAAACATT-TCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTGTCAAACT
* *
56366 TTTTCGAGTTCTATTATAGCTTC
193 TTTTCGAGTTCTTTTATAACTTC
* ** * * * * * *
56389 GATTCCTTACGGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAATATTTCATGCTCGAA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
*
56454 AAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACATTTT-GT-TTTAGAATTAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTT-GAATTAA
* * * ** ** *
56517 AAACTTATTTACGTGAGAATGGTTTCTCCCTTGGTT-TTTACAAAACTTTTGAACTTGTCAAACT
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACT
* *
56581 TTTACGAGTTATTTTATAACTTC
193 TTTTCGAGTTCTTTTATAACTTC
* * ** * * *
56604 GGATCCTTAAAGTATACAAGATAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
56669 AAATCGCATCATTTGGTCCAAATAATCTGTTATTCTGTAAACAAATTTTGGTCTTTGGATT-AAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
56733 AC---TCTATGTGAGAATTGTTTCTCT-TAT--TTCTT-GCCTGAAC-TTCTGAACTTGCCAAGC
130 ACTTATTTATGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCC-GAACTTTC-GAACTTGTCAAAC
*
56790 TTTTTCGAGTTTTTTTATAACTTC
192 TTTTTCGAGTTCTTTTATAACTTC
* * * *
56814 GGTTCCTTTAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTACATTCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * *
56879 AAATTGCATCATTTGGTCCAAATAGTTAGTACTTTTTGTAAAAAAACGTTTGGTCTTTGAATTAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGT-CATTTTGT-AAACAACTTTTGGTCTTTGAATTAA
* * * * * * * *
56944 AAACTAATTTACGTAAGAATTATTTCTCTCTTAGTTCTAGGCCGAACTTCCAAACTTTGT-AAAC
128 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTGTCAAAC
* * *
57008 TTTCTCGAGCTCTTTTATAACTTT
192 TTTTTCGAGTTCTTTTATAACTTC
* * * * * *
57032 GGTTCCTTACAGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * * * * *
57097 AAACCGCATTATTAGATCCAAATAATCTGTTATTTTGTAAACAACTTTTCGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* ** * * *
57162 ATTTATTTATGTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCCGAACTAGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* * *
57227 TTCAAGTTCTCTTATAGCTTC
195 TTCGAGTTCTTTTATAACTTC
* * * * * *
57248 GATTCCTTAGAGTATTCAAGACGATCGATTCCTTTGAGCAA-TTCTCTGAGCATTCCATTCTCGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTC-G
* * * * * *
57312 GAAATCGCAACACTTGGTCCAAATAGTTAT-TCCTTTTGTAAA-AA---AT-GTATTT--ATGTG
64 GAAATCGCATCATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAAT-TA
* * * * * ** **** * *
57369 AGAA-TTCTTTCTCT----CTTCG-TTCTAGGC--CAAACTT--TCGAACTTTACAAAC-T-T--
127 AAAACTTATTTATGTGAGAATT-GTTTCT-CTCTTGGTTCTTGGCCGAACTTT-CGAACTTGTCA
* *
57420 ---T--TTCGAGTTTTTTTTATAACTTT
189 AACTTTTTCGAG-TTCTTTTATAACTTC
* * * **
57443 GGTTCCTTAAAGTATTCAAAACGATCCATTTCTTCGAACAATTTTTCGAACATTCTGTTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * **
57508 AAATCGCATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTATGGGTTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** ** *
57573 TTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTTTGAACTTGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* *
57638 TTCGAGTACTTTTATATCTTC
195 TTCGAGTTCTTTTATAACTTC
** ** *
57659 GGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCAGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
57724 AAATCGTATCATTTGGTCCAAATAATTAGTCCTCTTGTAGAA-AACTTTCGGTCTTTGAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAA
** * * * * * *
57788 AACTTATTTACATAAGAATTATTTCACTCATGGTTCTAGGCCTAAC-TT---ACTT-TGCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACT
*
57848 TTTTCGAGTTCTTTTATAACTTT
193 TTTTCGAGTTCTTTTATAACTTC
* * * * * * * * *
57871 TGCTCCTTAAAGTATTCAAGATGATTCATTTCTTCGAACAATTTTTCGAATATTCCGTTCTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * * *
57936 AAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
58001 ATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* *
58064 TCCGAGTACTTTTATAACTTC
195 TTCGAGTTCTTTTATAACTTC
* * **
58085 GGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTCCATTCTCAAA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * *
58150 AAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * ** * * * *
58215 ACATATTTACGTGATAATTATTTAACTCTTGGTTCTAGGCCAAACTTCCAAACTT-TGCAAACTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACTT
* *
58279 TTTTGAGTTCTTTTATAACTTT
194 TTTCGAGTTCTTTTATAACTTC
* * * *
58301 GGTTCCTTAAAGTATTCAAGACAATCCATTTCATCGAACAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * *
58366 AAATCGCTTCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGATC-TTGGATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTAAA
*
58430 AATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAAC-TTCAGAACTTGTCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACT
* * * *
58492 TTTTCGGGTACGTTTATAACTTT
193 TTTTCGAGTTCTTTTATAACTTC
* * * * *
58515 GGTTCCTTAAAATATTCAAGACGATCGATTCCTAC-ATGCAATTTTTCGAACATTCTATTCTTGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATTC-TCG
* * ** * * * *
58579 GAAATCCCATCA-TTAGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTTAGTCTTTGAATTAAA
64 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** *
58643 AACTTATTTACT-TGAGAATTGTTTCAT-TCTTGGTTCTTGGCTGAACTGCCAAACTT-TGCAAA
129 AACTTATTTA-TGTGAGAATTGTTTC-TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAA
*
58705 CTTTTTCGAGTTCTTTTATAACTTT
191 CTTTTTCGAGTTCTTTTATAACTTC
* * * * * * *
58730 GGTTCCTTAAAGTATTCAAGACGAGCAATTTCTTCGAACAATTTTTCGAACATTCCGTACTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * * * *
58795 AAATCGTATCATTAGGTCCAAATAATCTGTTATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * * **
58860 TTTTATTTATGTGAGAATTGTTTCTCTCTTAGTTATTGGCCGAACTTTCGAACAAGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* * * *
58925 TTCAAGTTCTCTTATAGCTTT
195 TTCGAGTTCTTTTATAACTTC
* * * * *
58946 GGTTCCTTAGAGTATTCAAGACGATCAATTCCTTCGAGCAA-TTCTCTGAGCATTCCTTTCTCGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTC-G
* * * * * * * *
59010 GAAATCGCATCACTTGGTCCAAATAGTTAGTCCTTTTCTAAAAAAAACTTAT--T-TATG---TG
64 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTA
* * * * * ** **** *
59069 AGAA-TTATTTCTCT----CTTGGTTCTAGGC--CAAACTT--CCGAACTTTACAAACTT-T---
127 AAAACTTATTTATGTGAGAATTGTTTCT-CTCTTGGTTCTTGGCCGAACTTT-CGAACTTGTCAA
* * *
59121 -----TTCTAGTTTTTTTTATAACTTT
190 ACTTTTTCGAG-TTCTTTTATAACTTC
* * * ** *
59143 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCTAACAATTTTTCGAACATTCTGTGCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCG-G
* * * * * * * ***
59208 GAATCGCATAATTTGGTACAAATAATCTGTCATTTTGTATACAACTTTTGGTCTATGGGCTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * **
59273 TTTTATTTATGTGAGAATTGTTGCTCTCTTGGTTCTTGGCTAAAC-TTCTGAACTTGTCAAACTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTT
* * **
59337 TCTCGAGTACTTTTATATTTTC
194 TTTCGAGTTCTTTTATAACTTC
* ** ** * **
59359 AGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTCGAACATTTCATTCTCAAA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * **
59424 AAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAGAA-AACTTTCAGTCTTTGAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAA
* * * * ** * * *
59488 AACTTATCTACGTAAGAATTATTTCAATCATGGTTCTAGGCTGAAC-TT---ACTT-TGCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACT
* *
59548 TTTTTGAGTTCTTTTATAACTTT
193 TTTTCGAGTTCTTTTATAACTTC
* * * * * *
59571 TGCTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTTGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTC-TCGG
* * * * * * *
59636 AAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* *
59701 ATTTATTTATGTGAGAATT-ATT-TCTCTTGGTTCTTGGCCGAAC-TTCAGAACTTGTCAAACTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTT
* *
59763 TTTTGAGTACTTTTATAACTTC
194 TTTCGAGTTCTTTTATAACTTC
* * * *
59785 AGTTCCATAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTC-TCGG
* * * * * *
59850 AAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACCTTTCGATCTTTGAATTAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAA
** * * * * ** *
59915 AACTTATTTACATGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTT-TGCAAACT
129 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACT
* * *
59979 TTTTTGAGTTTTTTTATAAACTTT
193 TTTTCGAGTTCTTTTAT-AACTTC
* * * * * * * *
60003 GATTCCTTAAATTGTTCAAGATGATCCATTTCTTCGAACAATTTTTCAAACATTCCGTTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-GG
* * * * *
60068 AAATCGCATCATTTTGTTCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
65 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * ** * * *
60133 ATTTATTTATTTGAGAAACGTTTCTCTCTTGGTTTTTGGTCTAACTTTCGAACTTGTCAAACTTT
130 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTT
* *
60198 TTCAAGTTCTTTTATTACTTC
195 TTCGAGTTCTTTTATAACTTC
* * * * * *
60219 GGTTCCTTAAAATATTCAGGACGATCGC-TTCTTTCGAGCAAATTTTCGAGCATTCTATTCTCGG
1 GGTTCCTTAAAGTATTCAAGACGATC-CATTCCTTCGAGCAATTTTTCGAACATTCCATTCTC-G
* * *
60283 GAAATCGCATCA-TTAGTCCAAATAGTTAGTCCTTTTGTAAA
64 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
60324 AAATATATTT
Statistics
Matches: 7043, Mismatches: 1648, Indels: 989
0.73 0.17 0.10
Matches are distributed among these distances:
194 6 0.00
195 101 0.01
196 13 0.00
197 90 0.01
198 8 0.00
199 1 0.00
200 4 0.00
201 7 0.00
202 23 0.00
203 4 0.00
204 24 0.00
205 163 0.02
206 20 0.00
207 14 0.00
208 11 0.00
209 29 0.00
210 173 0.02
211 158 0.02
212 388 0.06
213 294 0.04
214 1035 0.15
215 1142 0.16
216 2344 0.33
217 212 0.03
218 219 0.03
219 11 0.00
220 3 0.00
221 11 0.00
222 2 0.00
224 2 0.00
225 1 0.00
226 13 0.00
227 16 0.00
228 6 0.00
229 1 0.00
230 22 0.00
231 25 0.00
232 26 0.00
233 40 0.01
234 49 0.01
235 50 0.01
236 36 0.01
237 39 0.01
238 20 0.00
239 22 0.00
240 21 0.00
241 31 0.00
242 15 0.00
243 12 0.00
245 11 0.00
246 1 0.00
248 2 0.00
249 2 0.00
251 12 0.00
252 9 0.00
253 21 0.00
254 7 0.00
255 5 0.00
256 4 0.00
257 3 0.00
258 9 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGA
AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTT
TCGAGTTCTTTTATAACTTC
Found at i:53042 original size:215 final size:215
Alignment explanation
Indices: 52699--55110 Score: 2451
Period size: 215 Copynumber: 11.2 Consensus size: 215
52689 CATGCTCGAT
* * *
52699 AAATCGCATCAATTGGTCCAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTAGAATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
52764 A-TTATTTACGTGAGAATGGCTTCTCCCTTGGTTCTTGACAGAACTTTCGAACATGTCAAACTTT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTTCAAACTTT
* * * * * *
52828 TACAAATTATTTTATAACTTCGGTCCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAACTT
130 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
52893 TCCAAACATT-CTTGCTCAGG
195 TTCGAACATTCCTTGCTCGGG
* * * * * * * *
52913 AAATAGGATCATTTGGTTCC-AATATTTTATCCTTTTATAAACAACTTTCGGTCTCTGAATTAAA
1 AAATCGCATCATTTGG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * *
52977 ATCTTATCTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTTAAACTT
65 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTT-TCAAACTT
* * * * **
53042 TTTCTAGTTATTTTATAACTTCAGTTCCTTAAAGTATTCAACACGATTGATTCCTTCGAGCAATT
129 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
53107 TTTCGAACATCCCATT-CTCCGA
194 TTTCGAACATTCC-TTGCTCGGG
* * * * * *
53129 AAATCGTATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * **
53194 ACTTATTTAAT-CGAGAA-TGATTTCTCTCTTGGTTCTAGGCCGAACTCCCGAACTATTCAAACT
66 ACTTATTT-ATGTGAGAATTG-TTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACT-TTCAAACT
* * * *
53257 TTTTTGAGTTATTTTATAACATT-GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAA
128 TTTTCGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
53321 TTTTTTGAACTTTTCATT-CTCGAG
192 TTTTTCGAAC-ATTCCTTGCTCGGG
* * * * *
53345 AAATCGCATCATTTGGTCCAAATAATCTATCATTTTGTAAACAACTCTTGGTCTTTGGATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
53410 ATTTATTTATGTGAGAATTG-TT-TCTCTTGCTTCTTGGCCGAAC-TTCTGAACTTATAAAAAAT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTT-T-CAAACT
* * * * * *
53472 TTTT-GGGTTCTCTTATAACTTCGGTT-CTTAAAGTATTTATGACAATCGATTCCTTCGAGCAAT
128 TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * *** *
53535 TATCCAAATATTTAATGCTCGAG
193 TTTTCGAACATTCCTTGCTCGGG
* * * * * *
53558 AAATTGCATAATTTGGTCCAAATAGTTTGTCCTTTCGTAAAAGAACTTTTAGTCTTTGAATTAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * * **
53623 AACTTATTTACGTGAGAATTATTTATGTCTTGGTTCTTGGCTAAACTTTCGAACTTTTCAAACTT
65 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTTCAAACTT
* * *
53688 TTTTGAGTTCTTTTATAACTTCGGTTCCTTAAAGCATTCAAGACGAT-C-TT-CTTCGAACAATT
129 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
53750 TTTCGAACATTCCATT-CTCGGG
194 TTTCGAACATTCC-TTGCTCGGG
* * * *
53772 AAATCGCATCATTTGATCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * * *
53837 ACTTATTTATATGAGAAATCTTTCTCTCTTGGTTATTAGTCGAACTTTCGAAATTTTCAAAAATT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCG-AACTTTC-AAACTT
** * *
53902 TTT-GAGTTCTAATACATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
129 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* **
53965 TTTCAAACATTAAATT-CTCGGG
194 TTTCGAACATT-CCTTGCTCGGG
* * * * * * *
53987 ATATCGTATCATTTGGTCCAAATAATCTT-TCATTTTGTAAACAACTTTTAGTATTTGGACTAAA
1 AAATCGCATCATTTGGTCCAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
54051 AACTTATTTATGTGAGAATTGTTTCT-TCTTGGTTCTTGGACAAACTTTCAAACTTGTGAAACTT
65 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTT-TCAAACTT
* * * * *
54115 TTTCGAGTTCTTTTGA-AACTTCAGTTCCTTAAAGCATTCAAGAGGATCGAATCCTTCGAGCAAT
129 TTTCGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
54179 TTGTCGAACATTCCATGCTCGAG
193 TTTTCGAACATTCCTTGCTCGGG
* * * * *
54202 AAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTCGGTCTTTCAATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
54267 ACTTATTTATGTGAGAATGGTTTCTCTCTTGGTTCTTCGTCGAACTTTCGAACTTTTCAAGCTTT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTTCAAACTTT
* * *
54332 TTCGAGTTCCTTTATAACTTTGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
130 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
54397 TTCGAACATTCCATT-CTCGGG
195 TTCGAACATTCC-TTGCTCGGG
** * * * * *
54418 AAATAACATCTTTTGGTCCAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* ** *
54483 ACTTATTTATGTGAGAATTTTTTCTCTCTTGGTTCTTGGTTGAACTTTCGAACTGTCAAACTTTT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTCAAACTTTT
* **
54548 TCGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATTGATTCCTTCGAGCAATTTT
131 TCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
54613 CCAAACATTCC-AGCCTCGAG
196 TCGAACATTCCTTG-CTCGGG
* * * * * ***
54633 AAATTGCACCATTTGGTCAAAATA-TTTGTCCTTTTGTAAAAAAACTTTCAATCTTTGAATTAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * *
54697 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCGAAGTT
65 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC-TTTCAAACTT
* * * * * **
54762 TTTCGAGTTATTTTAT-ACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTTGAACCGTT
129 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
54826 TTTCAAAAATTCCATT-CTCGGG
194 TTTCGAACATTCC-TTGCTCGGG
* * * * * *
54848 AAATCGCATCATTTAGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGATCTTTGGACTAAAA
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
54913 ACTTAATTATGTGAG-ATTGTTTCTCTCTTGGTTCTTAGCCGAAC-TTCTGAAATTTCCAAAATT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTT-CAAACTT
* * ** * * * *
54976 TTTTGAGTTCTTTTACAACTTCAATTCCTTAAAATAATCAAGAC-ATTCCATTCCTTAGAGTAAT
129 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAAT
* *
55040 TTTTCGAACATTCATT-CTCGAG
193 TTTTCGAACATTCCTTGCTCGGG
* * *
55062 AAATCGCATCATTTGGTCAAAATAATCTGT-ATTTTTGTAAACAACTTTT
1 AAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTT
55111 AGTATTCAAG
Statistics
Matches: 1815, Mismatches: 328, Indels: 110
0.81 0.15 0.05
Matches are distributed among these distances:
212 4 0.00
213 199 0.11
214 382 0.21
215 668 0.37
216 527 0.29
217 35 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (215 bp):
AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTCAAACTTTT
TCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCTTGCTCGGG
Found at i:53657 original size:430 final size:429
Alignment explanation
Indices: 50923--63535 Score: 6345
Period size: 430 Copynumber: 29.4 Consensus size: 429
50913 CCTCTCTCCT
* * * *
50923 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAGCATTCCATGTTCGA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATGCTCGG
* * * * * * * *
50987 GAAATCGCATCATTTCGACGAAGTAGTTGGTTATTTTGTAAACAAATTTTAGTCTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** * * * * * * *
51052 AACTTATTAACATTAGAATTGTTTTTCTCTTGGTTCCTAGTCGAACTTCCAAACTTTTCAAACTT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTT
* * * * * *
51117 TTTTGAGTTCTATTATAGCTTCGATTCCTTACAGTATTCAAGAAGATCCATTCCTTCGAGA-AAT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-ACAAT
** * *
51181 TTTTCGAACATTCCAACCTC-AGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
259 TTTTCGAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAA
* ** * * * * *
51245 AAACTTTTGGTCTTAAAATTAAAAACTTAGTTT-CGTGAGAATGGTT-TATCCATTGGTTTTTGA
323 CAACTTTTGGTCTTTGAATTAAAAACTTA-TTTATGTGAGAATTGTTCTCT-C-TTGGTTCTTGG
* *
51308 CTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTC-CTTTATAACTTT
385 CCGAACTTTCGAACTT-TCAAACTTTTT-GAGTTCTC-TTATAACTTC
* * ** *
51355 GGCTACC-TAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTAGAAACATTCTA-GCCTCG
1 GG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATG-CTCG
* * * * *
51418 GGAAATCGCACCATTTGGTCCAAATAGTTTGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAA
64 GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * * *
51483 AAACTTATTTATATGAGAATTGTTTGTCCCCTGGTTCTTGGCCAAACTTCTGAACTTTTCAAACT
129 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACT
* * * * **
51548 TTTTTGAGTTCTTTTACAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTAAAACAAT
194 TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAAT
* * * * *
51613 TTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCCAAGTAGTCTGTC-TTTTAGAAAA
259 TTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTT-GTAAA
* * * * *
51677 TAACTTTTGGTCTTTCG-ATTAAAAACTTCTTTACGTGAGAATGGTTTCTCTCTTGGTTGTTGGC
323 CAACTTTTGGTCTTT-GAATTAAAAACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGC
* * * * *
51741 CGAACATCCAAACTAGTCAAACTTTTTTGAGTTCTTTTATAACTTC
386 CGAACTTTCGAACT-TTCAAAC-TTTTTGAGTTCTCTTATAACTTC
* * * * * *
51787 GGTTGCTTAAAGTATTCAAGATGATCGAGTCCTTCGAGCAATTTTCCAAACATTCTA-GCCTCGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATG-CTCGG
* * * * * *
51851 GAAATCGCACCATTTGGTCAAAATAGTTTGTTC-TTTTGTAAAAAACATTCGGTCTTTAAATTAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTG-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* **
51915 AAACTTATTTATGTGAGAATTGTTTCTCACTTGGTTCTTGGTGGAACTTCCGAAC-ATTTCAAAC
129 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTA-TTCAAAC
* * * *
51979 TATTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCATTCGAGCAA
193 TTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAA
** * * * *
52044 TTTTTCGAACATTTGATTCTCAATAAATTGCATCATTTGGTCCAAATAATCTGTTATTTTGTAAA
258 TTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAA
* * ** * * * *
52109 CAACTTTTGTTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCGCTTGATTCTTAGCC
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCC
* *
52174 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCT-TTTTAACTTTC
387 GAACTTTCGAACTT-TCAAACTTTT-TGAGTTCTCTTATAAC-TTC
* * * * **
52219 -ATTCCTTAAAGTATTCAAGACGATCCATTCCTTCTAACAATTTTTCGAACATTCCATGCTCTAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * ** *
52283 AAATCGCAT-TTTTGGTCCAAATAGTTTTTCAGTTCATAAACAACTTTTGGTCTTTGAATTGAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * *
52347 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGCTGAACATCTGAA-TATGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * * *
52411 TTACAAGTTCTTTTATAACTGT-GG-T-CTT--TGAATTAAAGACGATCAATTCCTTC-AAGTAA
195 TTTCGAGTTCTTTTATAACT-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-CAA
* * * * * * *
52470 -TTTTCTAAGCATTCCATGCTCGAGAAACCGCATCATTTCGACCAAGA-AGTTTGTCATTTTGTA
258 TTTTTCGAA-CATTCCATTCTCGAGAAATCGCATCATTTGGTCCAA-ATAATCTGTCATTTTGTA
* * * ** * * * *
52533 AACAACTTTTGCTCTTTGAATTAAAAACTAATTAAAATTATAATTTTTCTCTCTTGGTTCTTGGT
321 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCTCTCTTGGTTCTTGGC
* * * * * *
52598 TGAAC-TTCTAAACTTTTCAAACTTTTT-CGTCTACTATTATAGCTTT
386 CGAACTTTC-GAAC-TTTCAAACTTTTTGAGT-T-CTCTTATAACTTC
* * **
52644 GATTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAA----T------TTCCATGCTCGAT
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * *
52699 AAATCGCATCAATTGGTCCAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTAGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
52764 A-TTATTTACGTGAGAATGGCTTCTCCCTTGGTTCTTGACAGAACTTTCGAAC-ATGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * * *
52827 TTACAAATTATTTTATAACTTCGGTCCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAACT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * * * * * * *
52892 TTCCAAACATT-C-TTGCTC-AGGAAATAGGATCATTTGGTTCC-AATATTTTATCCTTTTATAA
260 TTTCGAACATTCCATT-CTCGA-GAAATCGCATCATTTGG-TCCAAATAATCTGTCATTTTGTAA
* * * *
52953 ACAACTTTCGGTCTCTGAATTAAAATCTTATCTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
322 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGC
* * * *
53018 CGAACTTTCGAACTTGTTAAACTTTTTCTAGTTATTTTATAACTTC
386 CGAACTTTCGAACTT-TCAAACTTTTT-GAGTTCTCTTATAACTTC
* * ** * * * * *
53064 AGTTCCTTAAAGTATTCAACACGATTGATTCCTTCGAGCAATTTTTCGAACATCCCATTCTCCGA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * *
53129 AAATCGTATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
53194 ACTTATTTAAT-CGAGAA-TGATTTCTCTCTTGGTTCTAGGCCGAACTCCCGAACTATTCAAACT
131 ACTTATTT-ATGTGAGAATTG-TTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACT
* * *
53257 TTTTTGAGTTATTTTATAACATT-GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAA
194 TTTTCGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAA
* * * *
53321 TTTTTTGAACTTTTCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTATCATTTTGTAAA
258 TTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAA
* * * *
53386 CAACTCTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAATTGTT-TCTCTTGCTTCTTGGCCG
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCTCTCTTGGTTCTTGGCCG
* * *
53450 AAC-TTCTGAACTTATAAAAAATTTTTGGGTTCTCTTATAACTTC
388 AACTTTC-GAACTT-T-CAAACTTTTTGAGTTCTCTTATAACTTC
* * * * * * * ** *
53494 GGTT-CTTAAAGTATTTATGACAATCGATTCCTTCGAGCAATTATCCAAATATTTAATGCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * *
53558 AAATTGCATAATTTGGTCCAAATAGTTTGTCCTTTCGTAAAAGAACTTTTAGTCTTTGAATTAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAA
* * * * ** * *
53623 AACTTATTTACGTGAGAATTATTTATGTCTTGGTTCTTGGCTAAACTTTCGAACTTTTCAAACTT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTT
* *
53688 TTTTGAGTTCTTTTATAACTTCGGTTCCTTAAAGCATTCAAGACGAT-C-TT-CTTCGAACAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* *
53750 TTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGATCCAAATAATCTGTCATTTTGTAAACA
260 TTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACA
* * * * *
53815 ACTTTTGGTCTTTGGATTAAAAACTTATTTATATGAGAAATCT-TTCTCTCTTGGTTATTAGTCG
325 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAG-AAT-TGTTCTCTCTTGGTTCTTGGCCG
* * ** * *
53879 AACTTTCGAAATTTTCAAAAATTTTTGAGTTCTAATACATCTTC
388 AACTTTCG-AACTTTC-AAACTTTTTGAGTTCTCTTATAACTTC
** *
53923 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAAACATTAAATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * * *
53987 ATATCGTATCATTTGGTCCAAATAATCTT-TCATTTTGTAAACAACTTTTAGTATTTGGACTAAA
66 AAATCGCATCATTTGGTCCAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * *
54051 AACTTATTTATGTGAGAATTGTTTCT-TCTTGGTTCTTGGACAAACTTTCAAACT-TGTGAAACT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACT
* * * * * *
54114 TTTTCGAGTTCTTTTGA-AACTTCAGTTCCTTAAAGCATTCAAGAGGATCGAATCCTTCGAGCAA
194 TTTTCGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAA
* * * * * *
54178 TTTGTCGAACATTCCATGCTCGAGAAATCGTATCATTTGGTCCAAATAGTTTGTCCTTTTGTAAA
258 TTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAA
* * * * * *
54243 AAACTTTCGGTCTTTCAATTAAAAACTTATTTATGTGAGAATGGTTTCTCTCTTGGTTCTTCGTC
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGCC
* *
54308 GAACTTTCGAACTTTTCAAGCTTTTTCGAGTTC-CTTTATAACTTT
387 GAACTTTCGAAC-TTTCAAACTTTTT-GAGTTCTC-TTATAACTTC
* * *
54353 GGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
** * * * * *
54418 AAATAACATCTTTTGGTCCAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* ** * *
54483 ACTTATTTATGTGAGAATTTTTTCTCTCTTGGTTCTTGGTTGAACTTTCGAACT-GTCAAACTTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTTT
* ** *
54547 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATTGATTCCTTCGAGCAATTT
196 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
* * ** * * * * * *
54612 TCCAAACATTCCAGCCTCGAGAAATTGCACCATTTGGTCAAAAT-ATTTGTCCTTTTGTAAAAAA
261 TTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGT-AAACA
***
54676 ACTTTCAATCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA
325 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGCCGA
* * * * * * *
54741 ACTTCCAAACTTTTCGAAGTTTTTCGAGTTATTTTAT-ACTTT
389 ACTTTCGAAC-TTTCAAACTTTTT-GAGTTCTCTTATAACTTC
* * * ** * *
54783 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTTGAACCGTTTTTCAAAAATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * *
54848 AAATCGCATCATTTAGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGATCTTTGGACTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * *
54913 ACTTAATTATGTGAG-ATTGTTTCTCTCTTGGTTCTTAGCCGAACTTCTGAAAT-TTCCAAAATT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATT-CAAACTT
* * ** * * * **
54976 TTTTGAGTTCTTTTACAACTTCAATTCCTTAAAATAATCAAGAC-ATTCCATTCCTTAGAGTAAT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAACAAT
*
55040 TTTTCGAACATT-CATTCTCGAGAAATCGCATCATTTGGTCAAAATAATCTGT-ATTTTTGTAAA
259 TTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCA-TTTTGTAAA
* * * * * * * ** ** * * *
55103 CAACTTTTAGT-ATTCAA-GACAATC-GATTCCT-TCGAGTAATT-TTCTGAACAT--TCCAT-G
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGT-GAG-AATTGTTCT-CTCTTGGTTCTTGG
* *** * * ** * *
55160 CTTGAAAAATCGCATCATTTGGTCCAAA-TAGTTTGTCTT-TTTGTAACAAACTTTC
385 C-CGAACTTTCG-A--ACTT--T-CAAACT-TTTTGAGTTCTCT-T-A-TAAC-TTC
* * ** * * * * *** ** * *
55215 GG-T-CTT--TGAATT-AA-AAAAT-TACTT-ATAT-GAG-AGTGGTTTCTCTC-TT-GGTTCTT
1 GGTTCCTTAAAGTATTCAAGACGATCCA-TTCCT-TCGAGCAAT-TTTTCAAACATTCCATGCTC
* * * * * ** * *
55268 GGCCGAACTTC-CA-AACTTT--TCCAACT-TTTTCGAGTTCA-TTTAT-AACTTCGTTT--CCT
63 GG--GAA-ATCGCATCA-TTTGGTCCAAATAGTTT---G-TCATTTTGTAAACAACTTTTGGTCT
* * * ** *** * * *
55324 TAAAGTATTCAAGACAA-TCCATTCCT-TCGAGCAATT-TTTCAAACAT--TCCACT--CTCGAA
120 T--TGAATT-AA-A-AACT-TATTTATGT-GAG-AATTGTTTCTCTCTTGGTTC-TTGGC-CGAA
** * * * * * * **
55382 AATCTC-ATCATTTGGTACAAA-TAATCTGTC-A-TT-TTGTAAAGAACTTTTGG-T-CTT-TGG
175 CTTC-CGAAC-TAT--T-CAAACT--T-TTTCGAGTTCTT-T-TATAAC-TTCGGTTCCTTAAAG
* * * ** * * *** * * *
55439 T-TTAAAAAC--T-TATTTATGT-G-AGAATTGTTT---A-TTTTGGTTCTTGGCCGAACTTTCG
229 TATTCAAGACGATCCATTCCT-TCGAACAATT-TTTCGAACATTCCATTC-TCG-AGAA--ATCG
* * * * * ** *
55494 -AGC--TT-GT-CAAACT--T-TTTCAACTTCTT-T-TATAAC-TTTGTTTCCTTAAAATATTCA
288 CATCATTTGGTCCAAA-TAATCTGTC-A-TT-TTGTAAACAACTTTTG-GT-CTT-TGA-ATTAA
* * ** ** **** ** * ** *
55548 AGACGATCAATTCCT-TCGAGCAATT-TTCTAAACATTCCAACCTTGG-AAAAATAGC-ACCATT
345 AAAC--T-TATTTATGT-GAG-AATTGTTCT-CTC-TT-GGTTCTTGGCCGAACTTTCGA--ACT
* * ** * * * *
55609 TGGTCCAAAATAGTTTGTCCTTTTGTAAAAAACTTTC
400 T--T-CAAACT-TTTTG-AGTTCTCT-TATAAC-TTC
** * * ** *** * * *
55646 -ACT-CTTTAA--A---AA-AC--T-TATTTATGT-GAG-AATTGTTTCTCTCTTGGTTCTTAGC
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATT-TTTCAAACAT--TCCAT-GC
* * * * * * * *
55698 T---GAACTTC-CA-AACTTT--T-C-AATATTTTTTGAGTTCTT-T-TATAAC-TTTGGTTCCT
61 TCGGGAA-ATCGCATCA-TTTGGTCCAAATAGTTTGTCA-TT-TTGTAAACAACTTTTGG-TCTT
* * * * * *** * *
55751 TAAAGTAATAAAGACGATCCATTTCT-TGGAGCAACT-TTTCGAACATTCGATTCTTGG--GAAA
121 TGAA-T--TAAAAAC--T-TATTTATGT-GAG-AATTGTTTCTCTC-TT-GGTTCTTGGCCGAAC
* * * ** * * ** ** * * *
55812 TTGC-ATCATTTGGTCCAAA--TAAT--ATGTTATTTTGTAAACAACTTTTGGACTT--TGGATT
176 TTCCGAAC-TAT--T-CAAACTTTTTCGA-GTTCTTTTAT-AACTTCGGTT--CCTTAAAGTATT
* * * * * * *** * * * ** *
55870 AAAAAC--T-TATT--TACGTGAGAATTATTTCTCTCTTGGTTC-TTAGTCGA-ACTTC-CA-AA
233 CAAGACGATCCATTCCTTCG-AACAATT-TTTCGAACAT--TCCATT-CTCGAGAAATCGCATCA
* * * *
55926 CTT-GT-CAAACTTTTAT-TAGTTC-TTTT-T----AAC-TTTGGTTCCTTAAAGTGTTCAAGAC
293 TTTGGTCCAAA---TAATCT-G-TCATTTTGTAAACAACTTTTGG-TCTTTGAA---TT-AA-A-
* * * * * * * * *
55981 AA-TCCACTCCT-TCT-AGCAATT-TTC-CGAACAT--TCCAT-GCTCGAGAAATTGCATCAATA
346 AACT-TA-T-TTATGTGAG-AATTGTTCTC--TCTTGGTTCTTGGC-C--GAACTT---TCGA-A
** * * ** * * * * *
56038 GGTCCGAATAGTTGGTCA-TTTTGTAAATAACTTTT
398 CTTTC-AA-ACTTTTTGAGTTCTCT-TATAAC-TTC
** * * * * ** *
56073 GGTATTTGAATTAAAGGTTTATTTACTTGAGAACTATTTCTCTCTTGGCTCTCG-GCTGAACATC
1 GG---TT-CCTTAAA-G--TA-TT-C--AAG-ACGA--TC-C-ATT-CCT-TCGAGC--AATTTT
* ** **** * * * *
56137 T-AAACATGTCAAACTTTTACAAGGTTTTTTGTAAC-TTTGGTTCTTTAAAGTA-TTCAAGATGA
46 TCAAACAT-TC-CA-TGCT-C--GGGAAATCGCATCATTTGG-TC--CAAA-TAGTT-----TG-
* * ** * * * * * *** *
56199 TCCATTCCTTCG-AGA-AATTTTCTGACCATTT-CATGCTAAAAAAATCACATCATCCCAACCAA
95 T-CATT--TT-GTAAACAACTTT-TGGTC-TTTGAAT--T-AAAAACTTA-TTTAT-GTGA-GAA
* * * * **** ** *** * * *
56261 GTAGTTTGTTATTTTAAACAACTTTTACTCTTTGAA-TTAAAAACTTATT--AAC--ATTAGAAT
148 -TTGTTT-CTCTCTT--GGTTC-TTGGC-C---GAACTTCCGAAC-TATTCAAACTTTTTCGAGT
* * * * * * * * *
56321 TCTTTCTCT--CTT-GGTTCTTGGTTGAACT-TCCAA-AC-ATTTCAAACTT-TTTCGAGTTCTA
203 TCTTT-TATAACTTCGGTTC---CTTAAAGTATTCAAGACGA--TC-CA-TTCCTTCGA--ACAA
* * * ** * * *
56379 TTATAGCTTCGATTCCTTACGGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAATATTT
258 TT-T---TTCGA-ACATT-C--CATTCTCGA-GA---AAT-C-GC-ATC-A---TTTG-------
* *
56444 CATGCTCGAAA-AATC-GCATCATTTGGTCAAA-ATAGTTTGTCATTTT-GTAAACAACATTTTG
297 ---G-TCCAAATAATCTG--TCATTTTGT-AAACA-A------C-TTTTGGT------C--TTTG
** * * * ** ** *
56505 TTTTAGAATTAAAAACTTATTTACGTGAGAATGGTTTCTCCCTTGGTT-TTTACAAAACTTTTGA
339 AATTA-AA-----AACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGCCGAACTTTCGA
* * *
56569 ACTTGTCAAACTTTTACGAGTTATTTTATAACTTC
397 ACTT-TCAAACTTTT-TGAGTTCTCTTATAACTTC
* * ** *
56604 GGATCCTTAAAGTATACAAGATAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * *
56669 AAATCGCATCATTTGGTCCAAATAATCTGTTATTCTGTAAACAAATTTTGGTCTTTGGATT-AAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
56733 AC---TCTATGTGAGAATTGTTTCTCT-TAT--TTCTT-GCCTGAACTTCTGAACT-TGCCAAGC
131 ACTTATTTATGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCC-GAACTTCCGAACTAT-TCAAAC
* * *
56790 TTTTTCGAGTTTTTTTATAACTTCGGTTCCTTTAAGTATTCAAGACGATCGATTCCTTC-AAGCA
193 TTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-CA
* * * *
56854 ATTTTTCGAACATTACATTCTCGAGAAATTGCATCATTTGGTCCAAATAGT-TAGTACTTTTTGT
257 ATTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GT-CATTTTGT
* * * * * * * *
56918 AAAAAAACGTTTGGTCTTTGAATTAAAAACTAATTTACGTAAGAATTATTTCTCTCTTAGTTCTA
320 -AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTT
* * * * * * *
56983 GGCCGAACTTCCAAACTTTGTAAACTTTCTCGAGCTCTTTTATAACTTT
383 GGCCGAACTTTCGAACTTT-CAAACTTT-TTGAGTTCTCTTATAACTTC
* * * * * * * **
57032 GGTTCCTTACAGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * * * * *
57097 AAACCGCATTATTAGATCCAAATAATCTGTTATTTTGTAAACAACTTTTCGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* ** * *
57162 ATTTATTTATGTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCCGAACTAGTCAAACTTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTTT
* * * * * * * *
57227 TTCAAGTTCTCTTATAGCTTCGATTCCTTAGAGTATTCAAGACGATCGATTCCTTTGAGCAA-TT
196 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
* * * * * *
57291 CTCTGAGCATTCCATTCTCGGGAAATCGCAACACTTGGTCCAAAT-A---G---TTAT-T---C-
261 TTC-GAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACA
* * * *
57344 -CTTTT-G----T--A--AAAAA-TGTATTTATGTGAGAATTCTTTCTCTCTTCGTTCTAGGCCA
325 ACTTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCCG
* * *
57398 AACTTTCGAACTTTACAAACTTTTTCGAGTTTTTTTTATAACTTT
388 AACTTTCGAACTTT-CAAACTTTTT-GAG-TTCTCTTATAACTTC
* * * * ** *
57443 GGTTCCTTAAAGTATTCAAAACGATCCATTTCTTCGAACAATTTTTCGAACATTCTGTTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * **
57508 AAATCGCATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTATGGGTTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** ** **
57573 TTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTTTGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * ** ** *
57637 TTTCGAGTACTTTTATATCTTCGGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * *
57702 TTTTGAACATTCCATTCTC-AGGAAATCGTATCATTTGGTCCAAATAAT-TAGTCCTCTTGTAGA
260 TTTCGAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTA-A
* ** * * * * *
57765 A-AACTTTCGGTCTTTGAATTAAAAACTTATTTACATAAGAATTATTTCACTCATGGTTCTAGGC
322 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGC
* * *
57829 CTAAC-TT---ACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTT
386 CGAACTTTCGAACTTT-CAAACTTTTT-GAGTTCTCTTATAACTTC
* * * * * * * * * * **
57871 TGCTCCTTAAAGTATTCAAGATGATTCATTTCTTCGAACAATTTTTCGAATATTCCGTTCTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * * *
57936 AAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* *
58001 ATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCAAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * *
58063 TTCCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AAGCAAT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-CAAT
* * *
58127 TTTTCGAACATTCCATTCTCAAAAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAAA
259 TTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAA
* * * * * * * *
58191 AAACTTTCGATCTTTGAATTAAAAACATATTTACGTGATAATTATT-TAACTCTTGGTTCTAGGC
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCT--CTCTTGGTTCTTGGC
* * * * *
58255 CAAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTTTATAACTTT
386 CGAACTTTCGAACTTT-CAAAC-TTTTTGAGTTCTCTTATAACTTC
* * * * * *
58301 GGTTCCTTAAAGTATTCAAGACAATCCATTTCATCGAACAATTTTTCGAACATTCCATTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * *
58366 AAATCGCTTCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGATC-TTGGATTAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTAAA
* *
58430 AATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCAGAACT-TGTCAAACT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACT
* * * * * * * *
58492 TTTTCGGGTACGTTTATAACTTTGGTTCCTTAAAATATTCAAGACGATCGATTCCTAC-ATGCAA
194 TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-ACAA
* * * * * *
58556 TTTTTCGAACATTCTATTCTTGGGAAATCCCATCA-TTAGTCCAAATAA-CTAGTCCTTTTGTAA
258 TTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAA
* *
58619 AAAACTTTTAGTCTTTGAATTAAAAACTTATTTACT-TGAGAATTGTT-TCATTCTTGGTTCTTG
322 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTA-TGTGAGAATTGTTCTC--TCTTGGTTCTTG
* ** * * *
58682 GCTGAACTGCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTT
384 GCCGAACTTTCGAACTTT-CAAACTTTTT-GAGTTCTCTTATAACTTC
* * * * * * * **
58730 GGTTCCTTAAAGTATTCAAGACGAGCAATTTCTTCGAACAATTTTTCGAACATTCCGTACTCAAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * * *
58795 AAATCGTATCATTAGGTCCAAATAATCTGTTATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * * * * *
58860 TTTTATTTATGTGAGAATTGTTTCTCTCTTAGTTATTGGCCGAACTTTCGAACAAGTCAAACTTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTTT
* * * * * * *
58925 TTCAAGTTCTCTTATAGCTTTGGTTCCTTAGAGTATTCAAGACGATCAATTCCTTCGAGCAA-TT
196 TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
* * * * * *
58989 CTCTGAGCATTCCTTTCTCGGGAAATCGCATCACTTGGTCCAAAT-A---G----TTAGT---C-
261 TTC-GAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACA
* * * *
59042 -C-TTT--TC--T-AA-AAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAA
325 ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCCGA
* * * * *
59099 ACTTCCGAACTTTACAAACTTTTTCTAGTTTTTTTTATAACTTT
389 ACTTTCGAACTTT-CAAACTTTTT-GAG-TTCTCTTATAACTTC
* * * * **
59143 GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCTAACAATTTTTCGAACATTCTGTGCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCG-G
* * * * * * ***
59208 G-AATCGCATAATTTGGTACAAATAATCTGTCATTTTGTATACAACTTTTGGTCTATGGGCTAAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
** * ** *
59272 ATTTTATTTATGTGAGAATTGTTGCTCTCTTGGTTCTTGGCTAAACTTCTGAACT-TGTCAAACT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACT
* * ** * ** ** *
59336 TTCTCGAGTACTTTTATATTTTCAGTTCCTTAAAGTATTCAAGATTATAGATTCCTTCGAGCAAT
194 TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAAT
* * * *
59401 TTTTCGAACATTTCATTCTCAAAAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAGA
259 TTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTA-A
** * * * * * *
59465 A-AACTTTCAGTCTTTGAATTAAAAACTTATCTACGTAAGAATTATT-TCAATCATGGTTCTAGG
322 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCTC--TCTTGGTTCTTGG
* * *
59528 CTGAAC-TT---ACTTTGCAAACTTTTTTGAGTTCTTTTATAACTTT
385 CCGAACTTTCGAACTTT-CAAAC-TTTTTGAGTTCTCTTATAACTTC
* * * * * * * *
59571 TGCTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTTGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * * *
59636 AAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
59701 ATTTATTTATGTGAGAATT-ATT-TCTCTTGGTTCTTGGCCGAACTTCAGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * *
59763 TTTTGAGTACTTTTATAACTTCAGTTCCATAAAGTATTCAAGACGATCAATTCCTTCGAGCAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * *
59828 TTTCGAACATTCCATTCTTGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAAAA
260 TTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAC
* * ** * * * *
59892 AACCTTTCGATCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCACTCTTGGTTCTAGGCT
324 AA-CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCC
** * * * *
59957 GAACTGCCAAACTTTGCAAACTTTTTTGAGTTTTTTTATAAACTTT
387 GAACTTTCGAACTTT-CAAAC-TTTTTGAGTTCTCTTAT-AACTTC
* * * * * * * *
60003 GATTCCTTAAATTGTTCAAGATGATCCATTTCTTCGAACAATTTTTCAAACATTCCGTTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * *
60068 AAATCGCATCATTTTGTTCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * ** * * * *
60133 ATTTATTTATTTGAGAAACGTTTCTCTCTTGGTTTTTGGTCTAACTTTCGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * * *
60197 TTTCAAGTTCTTTTATTACTTCGGTTCCTTAAAATATTCAGGACGATCGC-TTCTTTCGAGCAAA
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC-CATTCCTTCGAACAAT
* * * * *
60261 TTTTCGAGCATTCTATTCTCGGGAAATCGCATCA-TTAGTCCAAAT-A---G----TTAGT---C
259 TTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAC
* * *
60314 --CTTTT-G----T--A--AAAAA-TATATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCC
324 AACTTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCC
* * * * * *
60367 AAACTTCCAAACTTTACAAATTTTTTCGAGTTCTTTTATAACTTT
387 GAACTTTCGAACTTT-CAAACTTTTT-GAGTTCTCTTATAACTTC
* * * * * * * *
60412 GGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTTCGTTCTCAGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
** * *
60477 AAATCGTTTCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTT-AGATTAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA-ATTAAA
* ** * * *
60541 AATTTATTTATGTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTCTGAACTAGTCAAACTT
130 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTT
* * * * *
60606 TTTCAAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATTCAACACGATCAATTCCTTCGAGCAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * *
60671 TTTTGAGCATTCCATTCTCG-GAATATCGCATCATTTGGTCCAAAT-A---G----TTAGT----
260 TTTCGAACATTCCATTCTCGAGAA-ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAC
* * * * * *
60723 -GCTTTT-G----T--A--AAAAACTTATTTACGTGAGAATTATTTCTATCTTGGTTCTAGGCCA
324 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCCG
* * *
60778 AACTTCCGAACTTTACAAACTTTTTCGAGTTCTGTTATAACTTT
388 AACTTTCGAACTTT-CAAACTTTTT-GAGTTCTCTTATAACTTC
* * * * * *
60822 GGGTCCTTAAAGTATTTAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCGTTCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * *
60887 AAATCACATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** ** *
60952 TTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTCCGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * * *
61016 TTTCGAGTACTTTTATATCTTCGATTCCTTAAAGTATTAAAGATGATCAATTCCTTCGAGCAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
*
61081 TTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCA-TTTGTAAA
260 TTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GT-CATTTTGTAAA
* * * * * * * * *
61144 AAACTTTCGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTAGGCTC-TAG--
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCC
* *
61206 G--C--T-GAAC-TT--AACTTTTTGGAGTTCTTTTATAACTTT
387 GAACTTTCGAACTTTCAAACTTTTT-GAGTTCTCTTATAACTTC
* * * * * ** * * *
61242 GGTTCTTTAAAGTATTCAAGATGATCTATTTCTTCGAACAATTTTTTGAACATTCTATTCTTGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * * * *
61307 AAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAAATTTTGGTCGTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
*
61372 ATTTA-TT-TGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * *
61432 TTTCGAGTACTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATT
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * * *
61497 TTTCGAAAATTCCATTTTTTG-GAAATCGCATCGTTTGGTCCAAATAAT-TAGTCCTTTTGTAAA
260 TTTCGAACATTCCA-TTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAA
* * * * * * * *
61560 AAACTTTCGATCTTTGAATTAAAAAATTATTTACGTGAGAATTATTTCACTCTAGGCTT-TTGGC
323 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGG-TTCTTGGC
* * * *
61624 CGAACTTCCAAACTTTGCAAACTTTTTGGAGTTCTTTTATAACTTT
386 CGAACTTTCGAACTTT-CAAACTTTTT-GAGTTCTCTTATAACTTC
* * * ** * * * * *
61670 GGTTCTTTAAAGTATTCAAGATGATCTATTTATTTGACCAATTTTTCGAACATTCCATTCTCGAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* * * *
61735 AAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* **
61800 ATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTTGAACT-TGTCAAACTT
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * * * * *
61862 TTTCGAGTACTTTTGTAACTTCGATTCCTTGAAGTATTCAAGACGATCGATTCTTTCGAGCAA-T
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * *
61926 TTTCTAAAAATTCCATTTTCTG-GAAATCGCTTCATTTGGTCCAAATAAT-TAGT-ACTTTTGTA
260 TTTC-GAACATTCCATTCTC-GAGAAATCGCATCATTTGGTCCAAATAATCT-GTCA-TTTTGTA
* * * * * * * *
61988 AA-AACTTTCGGT-TTTGAGTTAAAAACTTATTGACGTGATAATTATTTCACTCTTGGTTCTAGG
321 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGG
** * * * * *
62051 TTGAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTTTAAAACTTT
385 CCGAACTTTCGAACTTT-CAAAC-TTTTTGAGTTCTCTTATAACTTC
* * * * *
62098 GGTTCCTTAAAGTATTGAAGACGATCCATTTCGTT-GAACAATTTTTCAGACATTCCGTGCTCGG
1 GGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGG
** * *
62162 GAAAAAGCATCA-TTGGTCCAAATA-TTCTGTCATTTTGTAAACAACATTTGGT-TCTTGGATTA
65 GAAATCGCATCATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCT-TTGAATTA
* * *
62224 GAAATTTATTTATGTGAGAATTG-TT-TCTCTTGGTTATTGGCCGAACTTCCGAACT-TGTCAAA
128 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAA
*
62286 CTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG----A-----TCG----
192 CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACA
* *
62338 A---TT-G----------T-T-GGGAAATCGCATCATTTGGTTCAAATAAT-TAGTCATTTTGTA
257 ATTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTA
* * * * * * *
62386 AAAAACTTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATT-TAATTATTGGTTCTAG
321 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCT--CTCTTGGTTCTTG
* ** * * * *
62450 GCTGAACTACCAAACTTTGCAAACTTTTTTGGGTTCTTTTATAACTTT
384 GCCGAACTTTCGAACTTT-CAAAC-TTTTTGAGTTCTCTTATAACTTC
* * * * * *
62498 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG-AAATATTCTGAGCATTCCATGCTCGA
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AAACATTCCATGCTCGG
* * * **
62562 GAAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTTCTCTTTGAATTAAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** * * * *
62627 AACTTATTAAAACT-AGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTTTCAAACT
130 AACTTATT-TATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACT
* * * * * * * *
62691 TTTTC-ATGTTCTATTATAGCTTTGATTCCTTATAGCATTAAAGACGATCCATTCCTTCGAGCAA
194 TTTTCGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAA
* * * * *
62755 TTTTTCGAACATTTCATGCTC-AGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
258 TTTTTCGAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
* * * * * *
62819 ACAACTTTTGGCCTTAGAATTAAAAACTTATTTACGTGAGAATGGTTTCTCCCTTGGTTCTTGAC
322 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG-TTCTCTCTTGGTTCTTGGC
* * * * *
62884 TGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTT
386 CGAACTTTCGAACTT-TCAAACTTTT-TGAGTTCTCTTATAACTTC
* * * * * *
62930 GGTTCCTTACAGTATTCAAGACAATCCATTCCTTGGAACAATTTTCCAAACATTTCATGCTCGGG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
* ** * *
62995 AATTCGCATCATTTGGTATAAATATTTTGTCCTTTTGTAAACAA--------CTTTGAATTAAAA
66 AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
63052 ACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGCCAAACTTCCAAACT-TGTCAAAC-T
131 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTAT-TCAAACTT
* * * *
63115 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCAATTCCTTCGAGCAA-T
195 TTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATT
* * * ** * * * *
63179 TTTCAGAACATTCCATTTTTGGGAAATCATATCATTTGGTCCAAATAGTTTGTC-CTTTGTAAAA
260 TTTC-GAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAC
* * ** * * ** * * * *
63243 AACATTGGGTCTAGGAATTAAAAACTAATCTACATGATAATTATTTCTCTCTTGGTTCATGGCTG
324 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-GTTCTCTCTTGGTTCTTGGCCG
* * * *
63308 AACTTCCAAACATTTCAAACTTTTTCGACTTCTTTTATAACTTC
388 AACTTTCGAAC-TTTCAAACTTTTT-GAGTTCTCTTATAACTTC
** * * * * *
63352 GGTTCCTTAAAGTATTTGAGACGATCCATTTCTTCGAACAATTTTT-AGAACAGTCCATTCTCAG
1 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCA-AACATTCCATGCTCGG
* *
63416 GAAATCGCATCATTTGGTCTAAATAATTTGTCAGTTTT-TAAACAACTTTTGGTCTTTGAATTAA
65 GAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * *
63480 AAGCTTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCTGAAGTTCCGAACT
129 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACT
63536 TGTCAAATTT
Statistics
Matches: 9762, Mismatches: 1709, Indels: 1422
0.76 0.13 0.11
Matches are distributed among these distances:
397 1 0.00
398 38 0.00
399 25 0.00
400 135 0.01
401 53 0.01
402 8 0.00
403 69 0.01
404 1 0.00
407 1 0.00
408 3 0.00
409 266 0.03
410 504 0.05
411 276 0.03
412 70 0.01
413 267 0.03
414 13 0.00
415 3 0.00
416 299 0.03
417 59 0.01
418 30 0.00
419 86 0.01
420 259 0.03
421 26 0.00
422 204 0.02
423 135 0.01
424 124 0.01
425 119 0.01
426 558 0.06
427 523 0.05
428 861 0.09
429 660 0.07
430 1351 0.14
431 685 0.07
432 1222 0.13
433 146 0.01
434 237 0.02
435 5 0.00
436 2 0.00
438 1 0.00
440 3 0.00
441 3 0.00
445 1 0.00
446 6 0.00
447 15 0.00
448 2 0.00
451 1 0.00
454 2 0.00
455 5 0.00
456 4 0.00
457 7 0.00
458 2 0.00
460 1 0.00
461 7 0.00
462 2 0.00
464 3 0.00
467 2 0.00
468 10 0.00
469 2 0.00
471 3 0.00
472 5 0.00
473 1 0.00
474 6 0.00
475 13 0.00
476 16 0.00
477 15 0.00
478 21 0.00
479 21 0.00
480 13 0.00
481 13 0.00
482 5 0.00
483 5 0.00
484 4 0.00
485 8 0.00
486 11 0.00
487 4 0.00
488 7 0.00
490 1 0.00
491 3 0.00
492 7 0.00
493 2 0.00
494 3 0.00
495 5 0.00
496 8 0.00
497 5 0.00
498 5 0.00
499 2 0.00
500 2 0.00
501 1 0.00
502 1 0.00
504 3 0.00
505 4 0.00
507 10 0.00
508 5 0.00
509 1 0.00
510 2 0.00
511 1 0.00
512 5 0.00
513 9 0.00
514 4 0.00
515 3 0.00
516 5 0.00
517 5 0.00
518 2 0.00
519 3 0.00
520 5 0.00
522 2 0.00
523 2 0.00
524 2 0.00
526 1 0.00
527 5 0.00
528 1 0.00
529 2 0.00
530 1 0.00
531 10 0.00
532 10 0.00
533 9 0.00
534 3 0.00
535 2 0.00
536 9 0.00
537 9 0.00
538 5 0.00
539 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (429 bp):
GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGG
AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTATTCAAACTTT
TTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
TTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAA
CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTCTCTCTTGGTTCTTGGCCGAAC
TTTCGAACTTTCAAACTTTTTGAGTTCTCTTATAACTTC
Found at i:55208 original size:103 final size:104
Alignment explanation
Indices: 55013--55213 Score: 273
Period size: 104 Copynumber: 1.9 Consensus size: 104
55003 CTTAAAATAA
* * *
55013 TCAAGACATTCCATTCCTTAGAGTAATTTTTCGAACATTCATTCTCGAGAAATCGCATCATTTGG
1 TCAAGACAATCCATTCCTTAGAGTAATTTTTCGAACATTCATGCTCGAAAAATCGCATCATTTGG
55078 TCAAAATAATCTGTATTTTTGTAAAC-AACTTTTAGTAT
66 TCAAAATAATCTGTATTTTTGTAAACAAACTTTTAGTAT
* * *
55116 TCAAGACAATCGATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCTTGAAAAATCGCATCATTT
1 TCAAGACAATCCATTCCTTAGAGTAATTTTTC-GAACATT-CATGCTCGAAAAATCGCATCATTT
* * * *
55180 GGTCCAAATAGTTTGTCTTTTTGT-AACAAACTTT
64 GGTCAAAATAATCTGTATTTTTGTAAACAAACTTT
55214 CGGTCTTTGA
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
102 5 0.06
103 33 0.39
104 47 0.55
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.38
Consensus pattern (104 bp):
TCAAGACAATCCATTCCTTAGAGTAATTTTTCGAACATTCATGCTCGAAAAATCGCATCATTTGG
TCAAAATAATCTGTATTTTTGTAAACAAACTTTTAGTAT
Found at i:55767 original size:214 final size:214
Alignment explanation
Indices: 55111--63542 Score: 6906
Period size: 216 Copynumber: 39.8 Consensus size: 214
55101 AACAACTTTT
* * * * **
55111 AGTATTCAAGACAATCGATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCTTGAAAAATCGCAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
* * * * * *
55175 CATTTGGTCCAAATAGTTTGTCTTTTTGTAACAAACTTTCGGTCTTTGAATTAAAAAATTACTTA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
* * * * * *
55240 TATGAGAGTGGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCCAACTTTTTCGAGTTC
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
* * *
55305 ATTTATAACTTCGTTTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * * * *
55327 AGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCAAACATTCCACTC-TCGAAAATCTCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * *
55391 ATTTGGTACAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGTTTAAAAACTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-G-ATAAAAACTTATTTAT
* * * * * * *
55456 GTGAGAATTGTTTAT-T-TTGGTTCTTGGCCGAACTTTCGAGCTTGTCAAACTTTTTCAACTTCT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
*
55519 TTTATAACTTTGTTTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * * ** * *
55540 AATATTCAAGACGATCAATTCCTTCGAGCAA-TTTTCTAAACATTCCAACCTTGGAAAAATAGCA
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGG-GAAATCGCA
* * * ***
55604 CCATTTGGTCCAAAATAGTTTGTCCTTTTGTAAAAAACTTTCACTCTTT-A-AAAAACTTATTTA
64 TCATTTGGTCC-AAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTA
* * *
55667 TGTGAGAATTGTTTCTCTCTTGGTTCTTAGCTGAACTTCCAAACTTTTCAATA-TTTTTTGAGTT
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAA-ACTTTTTCGAGTT
55731 CTTTTATAACTTTGGTTCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * * * * * *
55754 AGTAATAAAGACGATCCATTTCTTGGAGCAACTTTTCGAACATTCGATTCTTGGGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * *
55819 ATTTGGTCCAAATAATATGTTATTTTGTAAACAACTTTTGGACTTTGGATTAAAAACTTATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* * *
55884 GTGAGAATTATTTCTCTCTTGGTTCTTAG-TCGAACTTCCAAACTTGTCAAACTTTTAT-TAGTT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTCCAAACTTGTCAAACTTTT-TCGAGTT
55947 CTTTT-TAACTTTGGTTCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * * * * * * * *
55969 AGTGTTCAAGACAATCCACTCCTTCTAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * * * ***
56034 AATAGGTCCGAATAGTTGGTCATTTTGTAAATAACTTTTGGTATTTGAATTAAAGGTTTATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA-
* * * * * * * * *
56099 T-TGAGAACTATTTCTCTCTTGGCTCTCGGCTGAACATCTAAACATGTCAAACTTTTACAAGGTT
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGA-GTT
* *
56163 -TTTTGTAACTTTGGTTCTTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * * * * **** *
56185 AGTATTCAAGATGATCCATTCCTTCGAG-AAATTTTCTGACCATTTCATGCTAAAAAAATCACAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
***** * * * * ** *
56249 CATCCCAACCAAGTAGTTTGTTA-TTT-TAAACAACTTTTACTCTTTGAATTAAAAACTTATTAA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
** * * *
56312 CATTAGAATTCTTTCTCTCTTGGTTCTTGGTTGAACTTCCAAACATT-TCAAACTTTTTCGAGTT
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAAC-TTGTCAAACTTTTTCGAGTT
* * * * *
56376 CTATTATAGCTTCGATTCCTTAC
192 CTTTTATAACTTTGGTTCCTTAA
* * * * * * * **
56399 GGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAATATTTCATGCTCGAAAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * *
56464 ATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACATTTT-GT-TTTAGAATTAAAAACTTATTT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAAC-TTTTGGTCTTT-G-A-TAAAAACTTATTT
* * * ** ** *** *
56527 ACGTGAGAATGGTTTCTCCCTTGGTT-TTTACAAAACTTTTGAACTTGTCAAACTTTTACGAGTT
127 ATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTT
* * *
56591 ATTTTATAACTTCGGATCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* ** * * * *
56614 AGTATACAAGATAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * *
56679 ATTTGGTCCAAATAATCTGTTATTCTGTAAACAAA-TTTTGGTCTTTGGATTAAAAC---TCTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAA-AAACTTTTGGTCTTT-GATAAAAACTTATTTAT
* ** * * *
56740 GTGAGAATTGTTTCTCT-TAT--TTCTTGCCTGAACTTCTGAACTTGCCAAGCTTTTTCGAGTTT
129 GTGAGAATTGTTTCTCTCT-TGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
* *
56802 TTTTATAACTTCGGTTCCTTTA
193 TTTTATAACTTTGGTTCCTTAA
* * * * * *
56824 AGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTACATTCTCGAGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * *
56889 ATTTGGTCCAAATAGTTAGTACTTTTTGTAAAAAAACGTTTGGTCTTTGAATTAAAAACTAATTT
66 ATTTGGTCCAAATAATTTGT-CATTTTGT-AAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTT
* * * * * * * *
56954 ACGTAAGAATTATTTCTCTCTTAGTTCTAGGCCGAACTTCCAAACTTTGT-AAACTTTCTCGAGC
127 ATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAAC-TTGTCAAACTTTTTCGAGT
*
57018 TCTTTTATAACTTTGGTTCCTTAC
191 TCTTTTATAACTTTGGTTCCTTAA
* * * * *** * *
57042 AGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAGAAACCGCATT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * * *
57107 ATTAGATCCAAATAATCTGTTATTTTGTAAACAACTTTTCGTCTTTGGATTAAAAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
** * * * * *
57172 GTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCCGAACTAGTCAAACTTTTTCAAGTTCT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* * * * *
57237 CTTATAGCTTCGATTCCTTAG
194 TTTATAACTTTGGTTCCTTAA
* * * * * *
57258 AGTATTCAAGACGATCGATTCCTTTGAGCAA-TTCTCTGAGCATTCCATTCTCGGGAAATCGCAA
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
* * *
57322 CACTTGGTCCAAATAGTTAT-TCCTTTTGTAAAAAA-----------TG---------TATTTAT
65 CATTTGGTCCAAATAATT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTAT
* * * ** * *
57366 GTGAGAATTCTTTCTCTCTTCGTTCTAGGCCAAACTTTCGAACTT-TACAAACTTTTTCGAGTTT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAG-TT
*
57430 TTTTTATAACTTTGGTTCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * * ** *
57453 AGTATTCAAAACGATCCATTTCTTCGAACAATTTTTCGAACATTCTGTTCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * **
57518 ATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTATGGGTTAAAATTTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCT-T-TGATAAAAACTTATTTAT
* *** *
57583 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTTTGAACTTGTCAAACTTTTTCGAGTACT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* *
57648 TTTATATCTTCGGTTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
** ** * ** *
57669 AGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCAGGAAATCGTATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * *
57734 ATTTGGTCCAAATAATTAGTCCTCTTGTAGAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTAT
* * * * * *
57799 ATAAGAATTATTTCACTCATGGTTCTAGGCCT-AACTT----ACTT-TGCAAACTTTTTCGAGTT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTT
* *
57858 CTTTTATAACTTTTGCTCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * * * * * *** *
57881 AGTATTCAAGATGATTCATTTCTTCGAACAATTTTTCGAATATTCCGTTCTCAAGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * *
57946 ATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* * *
58011 GTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTCCGAGTACT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
*
58074 TTTATAACTTCGGTTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * ****
58095 AGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTCCATTCTCAAAAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * *
58160 ATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAAAAACATATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTAT
* * ** * ** *
58225 GTGATAATTATTTAACTCTTGGTTCTAGGCCAAACTTCCAAACTT-TGCAAACTTTTTTGAGTTC
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTTC
58289 TTTTATAACTTTGGTTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * * * *
58311 AGTATTCAAGACAATCCATTTCATCGAACAATTTTTCGAACATTCCATTCTCGGGAAATCGCTTC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * *
58376 ATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGATCTTGGATTAAAAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGG-TCTTTGA-TAAAAACTTATTTAT
* * *
58441 GTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTT-CAGAACTTGTCAAACTTTTTCGGGTAC
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCA-AACTTGTCAAACTTTTTCGAGTTC
*
58503 GTTTATAACTTTGGTTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * * *
58525 AATATTCAAGACGATCGATTCCTAC-ATGCAATTTTTCGAACATTCTATTCTTGGGAAATCCCAT
1 AGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATTCTTGGGAAATCGCAT
* * * * *
58589 CA-TTAGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTTAGTCTTTGAATTAAAAACTTATTTA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
*
58653 CT-TGAGAATTGTTTCAT-TCTTGGTTCTTGGCTGAACTGCCAAACTT-TGCAAACTTTTTCGAG
128 -TGTGAGAATTGTTTC-TCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAG
58715 TTCTTTTATAACTTTGGTTCCTTAA
190 TTCTTTTATAACTTTGGTTCCTTAA
* * * * * * *** *
58740 AGTATTCAAGACGAGCAATTTCTTCGAACAATTTTTCGAACATTCCGTACTCAAGAAATCGTATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * **
58805 ATTAGGTCCAAATAATCTGTTATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAATTTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* * * * * ** *
58870 GTGAGAATTGTTTCTCTCTTAGTTATTGGCCGAACTTTCGAACAAGTCAAACTTTTTCAAGTTCT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* * *
58935 CTTATAGCTTTGGTTCCTTAG
194 TTTATAACTTTGGTTCCTTAA
* * * * *
58956 AGTATTCAAGACGATCAATTCCTTCGAGCAA-TTCTCTGAGCATTCCTTTCTCGGGAAATCGCAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
* * * * *
59020 CACTTGGTCCAAAT-A---G----TTAGT------CCTTT--TC--TAAAAAAAACTTATTTATG
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTATG
* * ** * * *
59067 TGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTT-TACAAACTTTTTCTAGTTTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAG-TTC
59131 TTTTATAACTTTGGTTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * ** * *
59153 AGTATTCAAGACGATCCATTTCTTCTAACAATTTTTCGAACATTCTGTGCTCGAGG-AATCGCAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTG-GGAAATCGCAT
* * * * * * * **
59217 AATTTGGTACAAATAATCTGTCATTTTGTATACAACTTTTGGTCTATGGGCTAAAATTTTATTTA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCT-T-TGATAAAAACTTATTTA
* * ** * *
59282 TGTGAGAATTGTTGCTCTCTTGGTTCTTGGCTAAACTTCTGAACTTGTCAAACTTTCTCGAGTAC
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
* *
59347 TTTTAT-ATTTTCAGTTCCTTAA
193 TTTTATAACTTT-GGTTCCTTAA
** ** * ****
59369 AGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTCGAACATTTCATTCTCAAAAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * ** * *
59434 ATTTGGTCCAAATAATTAGTCCTTTTGTAGAAAACTTTCAGTCTTTGAATTAAAAACTTATCTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTAT
* * ** * * *
59499 GTAAGAATTATTTCAATCATGGTTCTAGGCTGAACTT----ACTT-TGCAAACTTTTTTGAGTTC
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTTC
* *
59559 TTTTATAACTTTTGCTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * *
59581 AGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTTGGGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * *
59646 ATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCTTTGGATTAAGAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* * * *
59711 GTGAGAATT-ATT-TCTCTTGGTTCTTGGCCGAACTT-CAGAACTTGTCAAACTTTTTTGAGTAC
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCA-AACTTGTCAAACTTTTTCGAGTTC
** *
59773 TTTTATAACTTCAGTTCCATAA
193 TTTTATAACTTTGGTTCCTTAA
*
59795 AGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * *
59860 ATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACCTTTCGATCTTTGAATTAAAAACTTATTTA
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAA-CTTTTGGTCTTTG-A-TAAAAACTTATTTA
** * * * * *
59925 CATGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTT-TGCAAACTTTTTTGAGTT
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTT
* *
59989 TTTTTATAAACTTTGATTCCTTAA
192 CTTTTAT-AACTTTGGTTCCTTAA
* * * * * * * *
60013 ATTGTTCAAGATGATCCATTTCTTCGAACAATTTTTCAAACATTCCGTTCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * *
60078 ATTTTGTTCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* ** * * * *
60143 TTGAGAAACGTTTCTCTCTTGGTTTTTGGTCT-AACTTTCGAACTTGTCAAACTTTTTCAAGTTC
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
* *
60207 TTTTATTACTTCGGTTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * * * * *
60229 AATATTCAGGACGATCGC-TTCTTTCGAGCAAATTTTCGAGCATTCTATTCTCGGGAAATCGCAT
1 AGTATTCAAGACGATC-CATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCAT
* * * * *
60293 CA-TTAGTCCAAATAGTTAGTCCTTTTGT-AAAAA-------------AT----A--TATTTACG
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTATG
* * ** *
60337 TGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTCCAAACTT-TACAAATTTTTTCGAGTTCT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTTCT
60401 TTTATAACTTTGGTTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * * * * ** **
60422 AGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTTCGTTCTCAGGAAATCGTTTC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * *
60487 ATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTAGATTAAAAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
** * * ** * *
60552 GTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTCTGAACTAGTCAAACTTTTTCAAGTTCT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* *
60617 TTTATAGCTTCGGTTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * * * *
60638 AGTATTCAACACGATCAATTCCTTCGAGCAATTTTTTGAGCATTCCATTC-TCGGAATATCGCAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAA-ATCGCAT
* * *
60702 CATTTGGTCCAAAT-A---G----TTAGT-----GCTTTT-G----T-A-AAAAACTTATTTACG
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTATG
* * * ** *
60747 TGAGAATTATTTCTATCTTGGTTCTAGGCCAAACTTCCGAACTT-TACAAACTTTTTCGAGTTCT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTTCT
* *
60811 GTTATAACTTTGGGTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * * * *
60832 AGTATTTAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCGTTCTCGGGAAATCACATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * **
60897 ATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* * * *
60962 GTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTCCGAACTTGTCAAACTTTTTCGAGTACT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* * *
61027 TTTATATCTTCGATTCCTTAA
194 TTTATAACTTTGGTTCCTTAA
* * * *
61048 AGTATTAAAGATGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * *
61113 ATTTGGTCCAAATAATTAGTCCA-TTTGTAAAAAACTTTCGATCTTTGAATTAAAAACTTATTTA
66 ATTTGGTCCAAATAATTTGT-CATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
* * * * * * *
61177 CGTGAGAATTATTTCACTCTAGGCTCTAGGCTG--------AAC-T-T--AACTTTTTGGAGTTC
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
*
61230 TTTTATAACTTTGGTTCTTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * * * * *
61252 AGTATTCAAGATGATCTATTTCTTCGAACAATTTTTTGAACATTCTATTCTTGGGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * *
61317 ATTTGGTCCAAATAATCTGTCATTTTGTAAACAAA-TTTTGGTCGTTGGATTAAAAATTTA-TT-
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAA-AAACTTTTGGTC-TTTGA-TAAAAACTTATTTA
* * *
61379 TGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGAGTAC
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTC
* *
61442 TTTTATAACTTCGATTCCTTAA
193 TTTTATAACTTTGGTTCCTTAA
* * * *
61464 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAAATTCCATTTTTTGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * * *
61529 GTTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAAAAAATTATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTAT
* * * * *
61594 GTGAGAATTATTTCACTCTAGGCTT-TTGGCCGAACTTCCAAACTT-TGCAAACTTTTTGGAGTT
129 GTGAGAATTGTTTCTCTCTTGG-TTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAGTT
*
61657 CTTTTATAACTTTGGTTCTTTAA
192 CTTTTATAACTTTGGTTCCTTAA
* * ** * * * * *
61680 AGTATTCAAGATGATCTATTTATTTGACCAATTTTTCGAACATTCCATTCTCGAGAAATTGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * *
61745 ATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTATTTAT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTT-GA-TAAAAACTTATTTAT
* *** *
61810 GTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTTGAACTTGTCAAACTTTTTCGAGTACT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
* * * *
61873 TTTGTAACTTCGATTCCTTGA
194 TTTATAACTTTGGTTCCTTAA
* * * * * *
61894 AGTATTCAAGACGATCGATTCTTTCGAGCAA-TTTTCTAAAAATTCCATT-TTCTGGAAATCGCT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTT-GGGAAATCGCA
* *
61957 TCATTTGGTCCAAATAATTAGT-ACTTTTGT-AAAAACTTTCGGT-TTTGAGTTAAAAACTTATT
64 TCATTTGGTCCAAATAATTTGTCA-TTTTGTAAAAAACTTTTGGTCTTTGA--TAAAAACTTATT
* * * * * * * *
62019 GACGTGATAATTATTTCACTCTTGGTTCTAGGTTGAACTTCCAAACTT-TGCAAACTTTTTTGAG
126 TATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTTTCGAG
*
62083 TTCTTTTAAAACTTTGGTTCCTTAA
190 TTCTTTTATAACTTTGGTTCCTTAA
* * * * * * **
62108 AGTATTGAAGACGATCCATTTCGTT-GAACAATTTTTC-AGACATTCCGTGCTCGGGAAAAAGCA
1 AGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGA-ACATTCCATTCTTGGGAAATCGCA
* * * * *
62171 TCA-TTGGTCCAAAT-ATTCTGTCATTTTGTAAACAACATTTGGTTCTTGGATTAGAAATTTATT
64 TCATTTGGTCCAAATAATT-TGTCATTTTGTAAAAAACTTTTGG-TCTTTGA-TAAAAACTTATT
* * *
62234 TATGTGAGAATTG-TT-TCTCTTGGTTATTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGAGT
126 TATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGT
* *
62297 ACTTTTATAACTTCGGTTCCTTAA
191 TCTTTTATAACTTTGGTTCCTTAA
* * * * * ***
62321 AGTATTCAAGACGATCGATT-GTT-G-GGAA---ATCG--CA-T-CA-T-TTGGTTCAAATAATT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGG--GAAAT-CGC
* * *
62374 AGTCATTTTGT--AAAAAACTTTCGGTC--TTTG-AATTAAAA------------A-------CT
63 A-TCATTTGGTCCAAATAA-TTT--GTCATTTTGTAA--AAAACTTTTGGTCTTTGATAAAAACT
* * * * * *
62415 TATTTACGTGAGAATTATTTAAT-TATTGGTTCTAGGCTGAACTACCAAACTT-TGCAAACTTTT
122 TATTTATGTGAGAATTGTTT-CTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGT-CAAACTTTT
* *
62478 TTGGGTTCTTTTATAACTTTGGTTCCTTAA
185 TCGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * * * * *
62508 AGTATTCAAGACGATCCATTCCTTTGAG-AAATATTCTGAGCATTCCATGCTCGAGAAATCGCAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
* * * * * ** *
62572 CATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTTCTCTTTGAATTAAAAACTTATTAA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATT-T
** * *
62637 AACT-AGAATTGTTTCTCTCTTGGTTCTTGG-TCAAACTTCCAAACTTTTCAAACTTTTTC-ATG
127 ATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTCCAAACTTGTCAAACTTTTTCGA-G
* * * *
62699 TTCTATTATAGCTTTGATTCCTTAT
190 TTCTTTTATAACTTTGGTTCCTTAA
* * * * **
62724 AGCATTAAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCAGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * * * *
62789 ATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTAGAATTAAAAACTTATTTAC
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTAT
* * * * * * *
62854 GTGAGAATGGTTTCTCCCTTGGTTCTTGACTGAACTTTCGAACTTGTCAAACTTTTACGAGTTAT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCT
*
62919 TTTATAACTTTGGTTCCTTAC
194 TTTATAACTTTGGTTCCTTAA
* * * * * * * * *
62940 AGTATTCAAGACAATCCATTCCTTGGAACAATTTTCCAAACATTTCATGCTCGGGAATTCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
** * * * **
63005 ATTTGGTATAAATATTTTGTCCTTTTGTAAACAAC-TTT-G--AAT--TAAAAACTTATTTATGT
66 ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTATGT
* **
63064 GAGAATTGTTTCTCTCCTGGTTCTTGGCCAAACTTCCAAACTTGTCAAAC-TTTTCGAGTTCTTT
131 GAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCTTT
63128 TATAACTTTGGTTCCTTAA
196 TATAACTTTGGTTCCTTAA
* * * **
63147 AGTATTCAAGACAATCAATTCCTTCGAGCAA-TTTTCAGAACATTCCATTTTTGGGAAATCATAT
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTTGGGAAATCGCAT
* * * * ** * *
63211 CATTTGGTCCAAATAGTTTGTC-CTTTGTAAAAAACATTGGGTCTAGGAATTAAAAACTAATCTA
65 CATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
** * * * *
63275 CATGATAATTATTTCTCTCTTGGTTCATGGCTGAACTTCCAAACATT-TCAAACTTTTTCGACTT
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAAC-TTGTCAAACTTTTTCGAGTT
*
63339 CTTTTATAACTTCGGTTCCTTAA
192 CTTTTATAACTTTGGTTCCTTAA
** * * * * **
63362 AGTATTTGAGACGATCCATTTCTTCGAACAATTTTTAGAACAGTCCATTCTCAGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
* * * *
63427 ATTTGGTCTAAATAATTTGTCAGTTTT-TAAACAACTTTTGGTCTTTGAATTAAAAGCTTATTAA
66 ATTTGGTCCAAATAATTTGTCA-TTTTGTAAAAAACTTTTGGTCTTTG-A-TAAAAACTTATTTA
* * * *
63491 TGTGAGAATTGTTTCTCTCGTAGTTCTTGGCTGAAGTTCCGAACTTGTCAAA
128 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAA
63543 TTTATTTATG
Statistics
Matches: 6595, Mismatches: 1282, Indels: 678
0.77 0.15 0.08
Matches are distributed among these distances:
185 16 0.00
186 3 0.00
187 77 0.01
188 3 0.00
189 3 0.00
190 1 0.00
192 4 0.00
193 129 0.02
194 225 0.03
195 119 0.02
196 76 0.01
197 91 0.01
198 10 0.00
199 3 0.00
200 16 0.00
201 6 0.00
202 18 0.00
203 13 0.00
204 140 0.02
205 22 0.00
206 25 0.00
207 109 0.02
208 75 0.01
209 5 0.00
210 162 0.02
211 50 0.01
212 537 0.08
213 314 0.05
214 961 0.15
215 755 0.11
216 2106 0.32
217 297 0.05
218 221 0.03
219 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (214 bp):
AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
ATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATAAAAACTTATTTATGT
GAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTTCGAGTTCTTT
TATAACTTTGGTTCCTTAA
Found at i:57158 original size:428 final size:427
Alignment explanation
Indices: 55111--63542 Score: 8447
Period size: 428 Copynumber: 19.9 Consensus size: 427
55101 AACAACTTTT
* * * * *
55111 AGTATTCAAGACAATCGATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCTTGAAAAATCGCAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGAGAAATCGCAT
* * * * *
55175 CATTTGGTCCAAATAGTTTGTCTTTTTGTAACAAACTTTCGGTCTTTGAATTAAAAAATTACTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
** * ** * * *
55240 TATGAGAGTGGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTTTCCAACTTTTTCGAGTTC
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTC
* * * * * * *
55305 ATTTATAACTTCGTTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCAAACAT
195 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACAT
** * * * *
55370 TCCACTCTC-GAAAATCTCATCATTTGGTACAAATAATCTGTCATTTTGTAAAGAACTTTTGGTC
260 TCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC
* * * *
55434 TTTGGTTTAAAAACTTATTTATGTGAGAATTGTTTATTTTGGTTCTTGGCCGAACTT-TCGAGCT
325 TTTGGATT-AAAA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCT-GAACT
* * * * *
55498 TGTCAAACTTTTTCAACTTCTTTTATAACTTTGTTTCCTTAA
386 TGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * ** * * *
55540 AATATTCAAGACGATCAATTCCTTCGAGCAA-TTTTCTAAACATTCCAACCTTGGAAAAATAGCA
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTC-TCGAGAAATCGCA
* * **
55604 CCATTTGGTCCAAAATAGTTTGTCCTTTTGTAAAAAACTTTCACTCTTT--A--AAAAACTTATT
64 TCATTTGGTCC-AAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATT
* * * * *
55665 TATGTGAGAATTGTTTCTCTCTTGGTTCTTA-GCTGAACTTCCAAACTTTTCAATA-TTTTTTGA
128 TACGTGAGAATTATTTCTCTCTTGGTTC-TAGGCCGAACTTCCAAACTTTGCAA-ACTTTTTCGA
* * * * *
55728 GTTCTTTTATAACTTTGGTTCCTTAAAGTAATAAAGACGATCCATTTCTTGGAGCAACTTTTCGA
191 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGA
* * * *
55793 ACATT-CGATTCTTGGGAAATTGCATCATTTGGTCCAAATAATATGTTATTTTGTAAACAACTTT
256 ACATTCCG-TTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTT
* * * * *
55857 TGGACTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTAGTCGAACTTC
320 TGGTCTTTGGATT-AAAA--TATTTATGTGAGAATT-GTT-TCTCTTGGTTCTTGGCCGAACTTC
** * * *
55922 CAAACTTGTCAAACTTTTAT-TAGTTCTTTT-TAACTTTGGTTCCTTAA
380 TGAACTTGTCAAACTTTT-TCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * * * * *
55969 AGTGTTCAAGACAATCCACTCCTTCTAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * * * * * * * ***
56034 AATAGGTCCGAATAGTTGGTCATTTTGTAAATAACTTTTGGTATTTGAATTAAAGGTTTATTTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * * * * *
56099 TTGAGAACTATTTCTCTCTTGGCTCTCGGCTGAACATCTAAAC-ATGTCAAACTTTTACAAGGTT
131 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTG-CAAACTTTTTCGA-GTT
* * * * *
56163 -TTTTGTAACTTTGGTTCTTTAAAGTATTCAAGATGATCCATTCCTTCGAGA-AA-TTTTCTGAC
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA-ACAATTTTTC-GAA
* * * **** * ***** * * * * *
56225 CATTTCATGCTAAAAAAATCACATCATCCCAACCAAGTAGTTTGTTA-TTT-TAAACAACTTTTA
257 CATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTG
* * * ** * * ** **
56288 CTCTTTGAATTAAAAACTTATTAACATTAGAATTCTTTCTCTCTTGGTTCTTGGTTGAACTTCCA
322 GTCTTTGGATT-AAAA--TATTTATGTGAGAATT-GTT-TCTCTTGGTTCTTGGCCGAACTTCTG
* * * * *
56353 AACATT-TCAAACTTTTTCGAGTTCTATTATAGCTTCGATTCCTTAC
382 AAC-TTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * * * * *
56399 GGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAATATTTCATGCTCGAAAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * * * *
56464 ATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACATTT-TGT-TTTAGAATTAAAAACTTATTT
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAAC-TTTCGGTCTTT-GAATTAAAAACTTATTT
** * * ** *** *
56527 ACGTGAGAATGGTTTCTCCCTTGGTTTTTA--CAAAACTTTTGAAC-TTGTCAAACTTTTACGAG
129 ACGTGAGAATTATTTCTCTCTTGG-TTCTAGGCCGAACTTCCAAACTTTG-CAAACTTTTTCGAG
* * * * ** * * * *
56589 TTATTTTATAACTTCGGATCCTTAAAGTATACAAGATAATCCATTCCTTCGAGCAATTTTCCAAA
192 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAA
* * * * *
56654 CATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTTATTCTGTAAACAAATTTTG
257 CATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTG
* * **
56719 GTCTTTGGATTAAAA-CTCTATGTGAGAATTGTTTCTCTTATTTCTT-GCCTGAACTTCTGAACT
322 GTCTTTGGATTAAAATATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCC-GAACTTCTGAACT
* * ** *
56782 TGCCAAGCTTTTTCGAGTTTTTTTATAACTTCGGTTCCTTTA
386 TGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * *
56824 AGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTACATTCTCGAGAAATTGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* *
56889 ATTTGGTCCAAATAGTTAGTACTTTTTGTAAAAAAACGTTT-GGTCTTTGAATTAAAAACTAATT
66 ATTTGGTCCAAATAGTTAGT-CCTTTTGT-AAAAAAC-TTTCGGTCTTTGAATTAAAAACTTATT
* * * * *
56953 TACGTAAGAATTATTTCTCTCTTAGTTCTAGGCCGAACTTCCAAACTTTGTAAACTTTCTCGAGC
128 TACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGT
* *
57018 TCTTTTATAACTTTGGTTCCTTACAGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAAC
193 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAAC
** * * * * * *
57083 ATTCCGTTCTCAAGAAACCGCATTATTAGATCCAAATAATCTGTTATTTTGTAAACAACTTTTCG
258 ATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG
** *
57148 TCTTTGGATTAAAAATTTATTTATGTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCCGA
323 TCTTTGGATT-AAAA--TATTTATGTGAGAATTGTTTC--TCTTGGTTCTTGGCCGAACTTCTGA
* * * * * * *
57213 ACTAGTCAAACTTTTTCAAGTTCTCTTATAGCTTCGATTCCTTAG
383 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * *
57258 AGTATTCAAGACGATCGATTCCTTTGAGCAA-TTCTCTGAGCATTCCATTCTCGGGAAATCGCAA
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGAGAAATCGCAT
* *
57322 CACTTGGTCCAAATAGTTATTCCTTTTGTAAAAAA---T--G----T--A-T------TTA--T-
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * * * *
57366 -GTGAGAATTCTTTCTCTCTTCGTTCTAGGCCAAACTTTCGAACTTTACAAACTTTTTCGAGTTT
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAG-TT
* *
57430 TTTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATTTCTTCGAACAATTTTTCGAACA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* *
57495 TTCTGTTCTCGGGAAATCGCATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGT
259 TTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
* * ** *
57560 CTATGGGTTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTTTGAA
324 CTTTGGATTAAAA---TATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCTGAA
*
57625 CTTGTCAAACTTTTTCGAGTACTTTTATATCTTCGGTTCCTTAA
384 CTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
** * * *
57669 AGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTTGAACATTCCATTCTC-AGGAAATCGTAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGA-GAAATCGCAT
* * *
57733 CATTTGGTCCAAATAATTAGTCCTCTTGTAGAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * * *
57798 CATAAGAATTATTTCACTCATGGTTCTAGGCCTAACTT----ACTTTGCAAACTTTTTCGAGTTC
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTC
* * * * *
57859 TTTTATAACTTTTGCTCCTTAAAGTATTCAAGATGATTCATTTCTTCGAACAATTTTTCGAATAT
195 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACAT
** * * *
57924 TCCGTTCTCAAGAAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTC
260 TCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC
**
57989 TTTGGATTAAGAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCAAACTT
325 TTTGGATTAA-AA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACTT
*
58054 GTCAAACTTTTCCGAGTACTTTTATAACTTCGGTTCCTTAA
387 GTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * *
58095 AGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTCCATTCTCAAAAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * *
58160 ATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAAAAACATATTTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* ** * *
58225 GTGATAATTATTTAACTCTTGGTTCTAGGCCAAACTTCCAAACTTTGCAAACTTTTTTGAGTTCT
131 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCT
* *
58290 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTTCATCGAACAATTTTTCGAACATT
196 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
* *
58355 CCATTCTCGGGAAATCGCTTCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGATC
261 CCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG-TC
*
58420 -TTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCAGAACTT
325 TTTGGATT-AAAA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACTT
* * *
58484 GTCAAACTTTTTCGGGTACGTTTATAACTTTGGTTCCTTAA
387 GTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * * *
58525 AATATTCAAGACGATCGATTCCTAC-ATGCAATTTTTCGAACATTCTATTCTTGGGAAATCCCAT
1 AGTATTCAAGACGATCGATTCCTTCGA-GCAATTTTTCGAACATTCCATTCTCGAGAAATCGCAT
* ** **
58589 CA-TTAGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTTAGTCTTTGAATTAAAAACTTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * * *
58653 CTTGAGAATTGTTTCAT-TCTTGGTTCTTGGCTGAACTGCCAAACTTTGCAAACTTTTTCGAGTT
130 CGTGAGAATTATTTC-TCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTT
* *
58717 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAGCAATTTCTTCGAACAATTTTTCGAACA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* ** * * * *
58782 TTCCGTACTCAAGAAATCGTATCATTAGGTCCAAATAATCTGTTATTTTGTAAAAAACTTTTGGT
259 TTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
* *
58847 CTTTGGATTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTAGTTATTGGCCGAACTT-TCGA
324 CTTTGGATTAAAA---TATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCT-GA
** * * * * * *
58911 ACAAGTCAAACTTTTTCAAGTTCTCTTATAGCTTTGGTTCCTTAG
383 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * *
58956 AGTATTCAAGACGATCAATTCCTTCGAGCAA-TTCTCTGAGCATTCCTTTCTCGGGAAATCGCAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGAGAAATCGCAT
* *
59020 CACTTGGTCCAAATAGTTAGT-C------------CTTT---TC--T-AA-AAAAAACTTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * * *
59065 TGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTTTACAAACTTTTTCTAGTTT
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAG-TT
* *
59130 TTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCTAACAATTTTTCGAACA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* * * * *
59195 TTCTGTGCTCGAGG-AATCGCATAATTTGGTACAAATAATCTGTCATTTTGTATACAACTTTTGG
259 TTCCGTTCTCG-GGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG
* ** **
59259 TCTATGGGCTAAAATTTTATTTATGTGAGAATTGTTGCTCTCTTGGTTCTTGGCTAAACTTCTGA
323 TCTTTGGATTAAAA---TATTTATGTGAGAATTGTT--TCTCTTGGTTCTTGGCCGAACTTCTGA
* ** *
59324 ACTTGTCAAACTTTCTCGAGTACTTTTATATTTTCAGTTCCTTAA
383 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
** * * * *
59369 AGTATTCAAGATTATAGATTCCTTCGAGCAATTTTTCGAACATTTCATTCTCAAAAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * * *
59434 ATTTGGTCCAAATAATTAGTCCTTTTGTAGAAAACTTTCAGTCTTTGAATTAAAAACTTATCTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* ** * * *
59499 GTAAGAATTATTTCAATCATGGTTCTAGGCTGAACTT----ACTTTGCAAACTTTTTTGAGTTCT
131 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCT
* * *
59560 TTTATAACTTTTGCTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATT
196 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
* * * * *
59625 CCATTCTTGGGAAATTGCATCATTTGGTCCAAATAATCTATCATTTTTTAAACAACTTTTGGTCT
261 CCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT
* *
59690 TTGGATTAAGAATTTATTTATGTGAGAATTATTTCTCTTGGTTCTTGGCCGAACTTCAGAACTTG
326 TTGGATTAA-AA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACTTG
* * *
59755 TCAAACTTTTTTGAGTACTTTTATAACTTCAGTTCCATAA
388 TCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * *
59795 AGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* *
59860 ATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACCTTTCGATCTTTGAATTAAAAACTTATTTA
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAA-CTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * * * *
59925 CATGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGCAAACTTTTTTGAGTTT
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTC
* * * * *
59990 TTTTATAAACTTTGATTCCTTAAATTGTTCAAGATGATCCATTTCTTCGAACAATTTTTCAAACA
195 TTTTAT-AACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* *
60055 TTCCGTTCTCGGGAAATCGCATCATTTTGTTCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
259 TTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
* ** * * *
60120 CTTTGGATTAAAAATTTATTTATTTGAGAAACGTTTCTCTCTTGGTTTTTGGTCTAACTT-TCGA
324 CTTTGGATT-AAAA--TATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCT-GA
* * *
60184 ACTTGTCAAACTTTTTCAAGTTCTTTTATTACTTCGGTTCCTTAA
383 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * * * * *
60229 AATATTCAGGACGATCGCTTCTTTCGAGCAAATTTTCGAGCATTCTATTCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
*
60294 A-TTAGTCCAAATAGTTAGTCCTTTTGT--AAAA-------------AA-T----A--TATTTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* * *
60336 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTCCAAACTTTACAAATTTTTTCGAGTTCT
131 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCT
*
60401 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATT
196 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
* * ** * *
60466 TCGTTCTCAGGAAATCGTTTCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCT
261 CCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT
* ** *
60531 TTAGATTAAAAATTTATTTATGTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTCTGAACT
326 TTGGATT-AAAA--TATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCTGAACT
* * * *
60596 AGTCAAACTTTTTCAAGTTCTTTTATAGCTTCGGTTCCTTAA
386 TGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * *
60638 AGTATTCAACACGATCAATTCCTTCGAGCAATTTTTTGAGCATTCCATTCTCG-GAATATCGCAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAA-ATCGCAT
*
60702 CATTTGGTCCAAATAGTTAG------TG-----------C--T-TTTG--TAAAAAACTTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * *
60745 CGTGAGAATTATTTCTATCTTGGTTCTAGGCCAAACTTCCGAACTTTACAAACTTTTTCGAGTTC
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTC
* * * *
60810 TGTTATAACTTTGGGTCCTTAAAGTATTTAAGACGATCCATTTCTTCGAGCAATTTTTCGAACAT
195 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACAT
* *
60875 TCCGTTCTCGGGAAATCACATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTC
260 TCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC
** * *
60940 TTTGGATTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTCCGAAC
325 TTTGGATTAAAA---TATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCTGAAC
* *
61005 TTGTCAAACTTTTTCGAGTACTTTTATATCTTCGATTCCTTAA
385 TTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * *
61048 AGTATTAAAGATGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * *
61113 ATTTGGTCCAAATAATTAGTCCATTTGTAAAAAACTTTCGATCTTTGAATTAAAAACTTATTTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* * * * *
61178 GTGAGAATTATTTCACTCTAGGCTCTA-G--G--C-T--GAAC-TT---AACTTTTTGGAGTTCT
131 GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCT
* * * *
61231 TTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCTATTTCTTCGAACAATTTTTTGAACATT
196 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
** * * * *
61296 CTATTCTTGGGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAAATTTTGGTCG
261 CCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT
*
61361 TTGGATTAAAA-ATTTATTTGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGT
326 TTGGATTAAAATATTTA--TGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGT
*
61425 CAAACTTTTTCGAGTACTTTTATAACTTCGATTCCTTAA
389 CAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * *
61464 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAAATTCCATTTTTTG-GAAATCGCAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCA-TTCTCGAGAAATCGCAT
* * * *
61528 CGTTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTCGATCTTTGAATTAAAAAATTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * *
61593 CGTGAGAATTATTTCACTCTAGGCTT-TTGGCCGAACTTCCAAACTTTGCAAACTTTTTGGAGTT
130 CGTGAGAATTATTTCTCTCTTGG-TTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTT
* * * * * *
61657 CTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCTATTTATTTGACCAATTTTTCGAACA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* * *
61722 TTCCATTCTCGAGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
259 TTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
*
61787 CTTTGGATTAAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTTGAACT
324 CTTTGGATT-AAAA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACT
* * *
61852 TGTCAAACTTTTTCGAGTACTTTTGTAACTTCGATTCCTTGA
386 TGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * *
61894 AGTATTCAAGACGATCGATTCTTTCGAGCAA-TTTTCTAAAAATTCCATTTTCTG-GAAATCGCT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTC-GAGAAATCGCA
* * * *
61957 TCATTTGGTCCAAATAATTAGTACTTTTGT-AAAAACTTTCGGT-TTTGAGTTAAAAACTTATTG
64 TCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTT
* * ** *
62020 ACGTGATAATTATTTCACTCTTGGTTCTAGGTTGAACTTCCAAACTTTGCAAACTTTTTTGAGTT
129 ACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTT
* *
62085 CTTTTAAAACTTTGGTTCCTTAAAGTATTGAAGACGATCCATTTCGTT-GAACAATTTTTC-AGA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTC-TTCGAACAATTTTTCGA-A
* ** * *
62148 CATTCCGTGCTCGGGAAAAAGCATCA-TTGGTCCAAATATTCTGTCATTTTGTAAACAACATTTG
257 CATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTG
* *
62212 GT-TCTTGGATTAGAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTATTGGCCGAACTTCCGA
322 GTCT-TTGGATTA-AAA--TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGA
62276 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
383 ACTTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
62321 AGTATTCAAGACGATCGA----TT---G------TT-G--------------G-GAAATCGCATC
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
* * *
62357 ATTTGGTTCAAATAATTAGTCATTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
66 ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
* * * * * *
62422 GTGAGAATTATTTAAT-TATTGGTTCTAGGCTGAACTACCAAACTTTGCAAACTTTTTTGGGTTC
131 GTGAGAATTATTT-CTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTC
* * * *
62486 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGA-AA-TATTCTGAGC
195 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA-ACAATTTTTC-GAAC
* * * * * * * * **
62549 ATTCCATGCTCGAGAAATCGCATCATTTTGACCAAGTAGTTTGTCATTTTGTAAACAACTTTTTC
258 ATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG
* * ** * * **
62614 TCTTTGAATTAAAAACTTATTAAAACT-AGAATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCA
323 TCTTTGGATT-AAAA--TATT-TATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCTG
* * * * * * *
62678 AACTTTTCAAACTTTTTC-ATGTTCTATTATAGCTTTGATTCCTTAT
382 AACTTGTCAAACTTTTTCGA-GTACTTTTATAACTTCGGTTCCTTAA
* * * * *
62724 AGCATTAAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTC-AGGAAATCGCAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGA-GAAATCGCAT
* * * * * * *
62788 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTAGAATTAAAAACTTATTTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
** * * * * * * *
62853 CGTGAGAATGGTTTCTCCCTTGGTTCTTGACTGAACTTTCGAAC-TTGTCAAACTTTTACGAGTT
130 CGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTG-CAAACTTTTTCGAGTT
* * * * * * *
62917 ATTTTATAACTTTGGTTCCTTACAGTATTCAAGACAATCCATTCCTTGGAACAATTTTCCAAACA
194 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACA
* * * * ** * * *
62982 TTTCATGCTCGGGAATTCGCATCATTTGGTATAAATATTTTGTCCTTTTGTAAACAAC-TTT-G-
259 TTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT
** * **
63044 AATT--A--AAAACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGCCAAACTTCCAAAC
324 CTTTGGATTAAAA--TATTTATGTGAGAATTGTTTCTCT--TGGTTCTTGGCCGAACTTCTGAAC
* *
63105 TTGTCAAAC-TTTTCGAGTTCTTTTATAACTTTGGTTCCTTAA
385 TTGTCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
* * * * * **
63147 AGTATTCAAGACAATCAATTCCTTCGAGCAA-TTTTCAGAACATTCCATTTTTGGGAAATCATAT
1 AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC-GAACATTCCATTCTCGAGAAATCGCAT
* * * ** * *
63211 CATTTGGTCCAAATAGTTTGTCC-TTTGTAAAAAACATTGGGTCTAGGAATTAAAAACTAATCTA
65 CATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTA
* * * *
63275 CATGATAATTATTTCTCTCTTGGTTC-ATGGCTGAACTTCCAAACATTT-CAAACTTTTTCGACT
130 CGTGAGAATTATTTCTCTCTTGGTTCTA-GGCCGAACTTCCAAAC-TTTGCAAACTTTTTCGAGT
* ** *
63338 TCTTTTATAACTTCGGTTCCTTAAAGTATTTGAGACGATCCATTTCTTCGAACAATTTTTAGAAC
193 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAAC
* * * * *
63403 AGTCCATTCTCAGGAAATCGCATCATTTGGTCTAAATAATTTGTCAGTTTT-TAAACAACTTTTG
258 ATTCCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCA-TTTTGTAAACAACTTTTG
* * * * * *
63467 GTCTTTGAATTAAAAGCTTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCTGAAGTTCCG
322 GTCTTTGGATTAAAA---TATTTATGTGAGAATTGTTTCTCT--TGGTTCTTGGCCGAACTTCTG
63532 AACTTGTCAAA
382 AACTTGTCAAA
63543 TTTATTTATG
Statistics
Matches: 6764, Mismatches: 973, Indels: 531
0.82 0.12 0.06
Matches are distributed among these distances:
398 36 0.01
399 19 0.00
400 143 0.02
401 55 0.01
402 7 0.00
403 74 0.01
404 2 0.00
407 2 0.00
408 4 0.00
409 264 0.04
410 491 0.07
411 283 0.04
412 72 0.01
413 272 0.04
414 11 0.00
415 2 0.00
416 220 0.03
417 11 0.00
418 11 0.00
419 5 0.00
420 143 0.02
421 2 0.00
422 192 0.03
423 111 0.02
424 62 0.01
425 130 0.02
426 387 0.06
427 434 0.06
428 824 0.12
429 631 0.09
430 728 0.11
431 343 0.05
432 434 0.06
433 115 0.02
434 241 0.04
435 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (427 bp):
AGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGCATC
ATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCT
TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATT
CCGTTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT
TTGGATTAAAATATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCA
AACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAA
Found at i:57508 original size:195 final size:194
Alignment explanation
Indices: 57158--57531 Score: 448
Period size: 195 Copynumber: 1.9 Consensus size: 194
57148 TCTTTGGATT
* * * * *
57158 AAAAATTTATTTATGTGAGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCCGAACTAGTCAAA
1 AAAAATGTATTTATGTGAGAAACGTTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTAGTCAAA
* * * * * *
57223 CTTTTTCAAGTTCTCTTATAGCTTCGATTCCTTAGAGTATTCAAGACGATCGATTCCTTTGAGCA
66 CTTTTTCAAGTTCTCTTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAACA
* *
57288 ATTCTCTGAGCATTCCATTCTCGGGAAATCGCAACACTTGGTCCAAATAGTTATTCCTTTTGTA
131 ATTCTCTGAACATTCCATTCTCGGGAAATCGCAACACTTGGTACAAATAGTTATTCCTTTTGTA
* * *
57352 AAAAATGTATTTATGTGAGAATTC-TTTCTCTCTTCGTTCTAGGCCAAACTTTCGAACT-TTACA
1 AAAAATGTATTTATGTGAGAA-ACGTTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTAGT-CA
* * * * * *
57415 AACTTTTTCGAGTTTTTTTTATAACTTTGGTTCCTTAAAGTATTCAAAACGATCCATTTCTTCGA
64 AACTTTTTCAAG-TTCTCTTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGA
* ** * *
57480 ACAATT-TTTCGAACATTCTGTTCTCGGGAAATCGCATCATTTGGTACAAATA
128 ACAATTCTCT-GAACATTCCATTCTCGGGAAATCGCAACACTTGGTACAAATA
57532 ATCTGTCATT
Statistics
Matches: 149, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
193 1 0.01
194 64 0.43
195 84 0.56
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (194 bp):
AAAAATGTATTTATGTGAGAAACGTTTCTCTCTTCGTTCTAGGCCAAACTTCCGAACTAGTCAAA
CTTTTTCAAGTTCTCTTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAACA
ATTCTCTGAACATTCCATTCTCGGGAAATCGCAACACTTGGTACAAATAGTTATTCCTTTTGTA
Found at i:60885 original size:194 final size:194
Alignment explanation
Indices: 60538--60910 Score: 489
Period size: 194 Copynumber: 1.9 Consensus size: 194
60528 TCTTTAGATT
* * * * * * *
60538 AAAAATTTATTTATGTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTCTGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAAACATTTCTATCTTAGTTCTAGGCCAAACTTCCGAACTAGTCAAA
* * *
60603 CTTTTTCAAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATTCAACACGATCAATTCCTTCGAGCA
66 CTTTTTCAAGTTCTGTTATAACTTCGGGTCCTTAAAGTATTCAACACGATCAATTCCTTCGAGCA
* * * *
60668 ATTTTTTGAGCATTCCATTCTC-GGAATATCGCATCATTTGGTCCAAATAGTTAGTGCTTTTGTA
131 ATTTTTCGAACATTCCATTCTCGGGAA-ATCACATCATTTGGTACAAATAGTTAGTGCTTTTGTA
** * *
60732 AAAAACTTATTTACGTGAGAATTATTTCTATCTTGGTTCTAGGCCAAACTTCCGAACT-TTACAA
1 AAAAACTTATTTACGTGAGAAACATTTCTATCTTAGTTCTAGGCCAAACTTCCGAACTAGT-CAA
* * * * * *
60796 ACTTTTTCGAGTTCTGTTATAACTTTGGGTCCTTAAAGTATTTAAGACGATCCATTTCTTCGAGC
65 ACTTTTTCAAGTTCTGTTATAACTTCGGGTCCTTAAAGTATTCAACACGATCAATTCCTTCGAGC
*
60861 AATTTTTCGAACATTCCGTTCTCGGGAAATCACATCATTTGGTACAAATA
130 AATTTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTACAAATA
60911 ATCTGTCATT
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
193 1 0.01
194 147 0.97
195 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (194 bp):
AAAAACTTATTTACGTGAGAAACATTTCTATCTTAGTTCTAGGCCAAACTTCCGAACTAGTCAAA
CTTTTTCAAGTTCTGTTATAACTTCGGGTCCTTAAAGTATTCAACACGATCAATTCCTTCGAGCA
ATTTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTACAAATAGTTAGTGCTTTTGTA
Found at i:62504 original size:187 final size:184
Alignment explanation
Indices: 62168--62523 Score: 450
Period size: 187 Copynumber: 1.9 Consensus size: 184
62158 TCGGGAAAAA
* * * * *
62168 GCATCATTGGTCCAAATATTCTGTCATTTTGTAAACAACATTTGGTTCTTGGATTAGAAATTTAT
1 GCATCATTGGTCCAAATATTCAGTCATTTTGTAAAAAACATTTGGTTCTTGAATTAAAAACTTAT
* * * * * *
62233 TTATGTGAGAATTGTTTCTCTTGGTTATTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGAGTA
66 TTACGTGAGAATTATTTCTATTGGTTATAGGCCGAACTACCAAACTTGTCAAACTTTTTCGAGTA
62298 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTGTTGGGAAATC
131 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTGTTGGGAAATC
*
62352 GCATCATTTGGTTCAAATAATT-AGTCATTTTGTAAAAAAC-TTTCGG-TCTTTGAATTAAAAAC
1 GCATCA-TTGGTCCAAAT-ATTCAGTCATTTTGTAAAAAACATTT-GGTTC-TTGAATTAAAAAC
* * *
62414 TTATTTACGTGAGAATTATTTAATTATTGGTTCTAGGCTGAACTACCAAACTT-TGCAAACTTTT
62 TTATTTACGTGAGAATTATTT--CTATTGGTTATAGGCCGAACTACCAAACTTGT-CAAACTTTT
* * * *
62478 TTGGGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
124 TCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
62524 CATTCCTTTG
Statistics
Matches: 146, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
184 11 0.08
185 57 0.39
186 4 0.03
187 74 0.51
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (184 bp):
GCATCATTGGTCCAAATATTCAGTCATTTTGTAAAAAACATTTGGTTCTTGAATTAAAAACTTAT
TTACGTGAGAATTATTTCTATTGGTTATAGGCCGAACTACCAAACTTGTCAAACTTTTTCGAGTA
CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTGTTGGGAAATC
Found at i:63595 original size:60 final size:60
Alignment explanation
Indices: 63484--63602 Score: 150
Period size: 60 Copynumber: 2.0 Consensus size: 60
63474 AATTAAAAGC
* * * *
63484 TTATTAATGTGAGAATTGTTTCTCTCGTAGTTCTTGGCTGAAGTTCCGAACTTGTCAAAT
1 TTATTAATGTGAGAATTGTTTCTCTAGTAGTTCTTGACTAAACTTCCGAACTTGTCAAAT
* * * *
63544 TTATTTATGTGAGAATTGTTTCTCTATTGGTTCTTTGAC-AAACTTCTGAACTTGTCAAA
1 TTATTAATGTGAGAATTGTTTCTCTAGTAGTTC-TTGACTAAACTTCCGAACTTGTCAAA
63603 CTTTTTCAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
60 46 0.92
61 4 0.08
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (60 bp):
TTATTAATGTGAGAATTGTTTCTCTAGTAGTTCTTGACTAAACTTCCGAACTTGTCAAAT
Found at i:63925 original size:215 final size:213
Alignment explanation
Indices: 63544--64223 Score: 810
Period size: 214 Copynumber: 3.2 Consensus size: 213
63534 CTTGTCAAAT
* * *
63544 TTATTTATGTGAGAATTGTTTCTCTATTGGTTCTTTGACAAAC-TTCTGAACTTGTCAAACTTTT
1 TTATTTATGTGAGAATTGTTTCTCT-TTGGTTCTTGGTCGAACTTTC-GAACTTGTCAAACTTTT
* * * *
63608 TCAAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTC-AGGAGGATCGATTCCTTCGTGCAATTT
64 TCAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGG-CGATCGATTCCTTCGAGAAATTT
* * *
63672 TTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATGGTTTATCCTTTTGTAAAAAA
128 TTTGAACATTCCATCCTCG-GAAATCACATCATTTGGTC-AAATAGTTTATCCTTTTGTAAAAAA
** *
63737 CTTCCGATCTTTGAATTAAAAAC
191 CTTTTGGTCTTTGAATTAAAAAC
* * * *
63760 TTATTTACGTGAGAATGGTTTCTCTTTTGGTTCTTGGTCGAACTTTCGAGCTTTTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTC-TTTGGTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTT
* * * *
63825 CAAGTT-TTTTATAACTTCAATTCCTTAAAGTATTCAAGGCGATCCATTCCTTAGAAAAATTTTT
65 CAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCGATTCCTTCGAGAAATTTTT
* * * * * * * *
63889 TGAACATTTCATTCTCAGGAAATAACATCTTTTGGTCCAAATAATCTATCATTTTGTAAAGAACT
130 TGAACATTCCATCCTC-GGAAATCACATCATTTGGT-CAAATAGTTTATCCTTTTGTAAAAAACT
*
63954 TTTGGTCTTTGGATTAAAAAC
193 TTTGGTCTTTGAATTAAAAAC
* *
63975 TTATTTATGTGAGAATTGTTTCTC-TTGGTTCTTGATCGAACTTTTGAACTTGTCAAACTTTTTC
1 TTATTTATGTGAGAATTGTTTCTCTTTGGTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTTC
* ** ** * **
64039 CAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGTAATTTTCC
66 AAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCGATTCCTTCGAGAAATTTTTT
* * * * * * *
64104 AAACATTCCAACCTTGGGAAATCACACCATTCGGTGCAAATAGTTTGTCCTTTTGTAAATAACTT
131 GAACATTCCATCC-TCGGAAATCACATCATTTGGT-CAAATAGTTTATCCTTTTGTAAAAAACTT
64169 TTGGTCTTTGAATTAAAAAC
194 TTGGTCTTTGAATTAAAAAC
64189 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT
1 TTATTTATGTGAGAATTGTTTCTCT-TTGGTTCTT
64224 TGCCAAACTT
Statistics
Matches: 392, Mismatches: 63, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
213 40 0.10
214 139 0.35
215 137 0.35
216 72 0.18
217 4 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (213 bp):
TTATTTATGTGAGAATTGTTTCTCTTTGGTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTTC
AAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCGATTCCTTCGAGAAATTTTTT
GAACATTCCATCCTCGGAAATCACATCATTTGGTCAAATAGTTTATCCTTTTGTAAAAAACTTTT
GGTCTTTGAATTAAAAAC
Found at i:63987 original size:491 final size:490
Alignment explanation
Indices: 63054--63999 Score: 1234
Period size: 491 Copynumber: 1.9 Consensus size: 490
63044 AATTAAAAAC
* *
63054 TTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGCCAAACTTCCAAACTTGTCAAACTTTTC
1 TTATTTATGTGAGAATTGTTTCTCTACTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTC
* * **
63119 GAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCAATTCCTTCGAGCAATTTTCA
66 AAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTCAAGACAATCAATTCCTTCGAGCAATTTTCA
** * * * *
63184 GAACATTCCATTTTTGGGAAATCATATCATTTGGTCCAAATAGTTTGTCCTTTGTAAAAAACATT
131 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAGTTTATCCTTTGTAAAAAACATT
* * * *
63249 GGGTCTAGGAATTAAAAACTAATCTACATGATAATTATTTCTCTCTTGGTTCATGGCTGAACTTC
196 CGATCTAGGAATTAAAAACTAATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCTGAACTTC
* ** **
63314 CAAACATTTCAAACTTTTTCGACTTCTTTTATAACTTCGGTTCCTTAAAGTATTTGAGACGATCC
261 CAAACATTTCAAACTTTTTCAACTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACGATCC
* * * ** * *
63379 ATTTCTTCGAACAATTTTTAGAACAGTCCATTCTCAGGAAATCGCATCATTTGGTCTAAATAATT
326 ATTCCTTAGAAAAATTTTTAGAACAGTCCATTCTCAGGAAATAACATCATTTGGTCCAAATAATC
* *
63444 TGTCAGTTTTTAAACAACTTTTGGTCTTTGAATTAAAAGCTTATTAATGTGAGAATTGTTTCTCT
391 TATCAGTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCT
63509 CGTAGTTCTTGGCTGAAGTTCCGAACTTGTCAAAT
456 CGTAGTTCTTGGCTGAAGTTCCGAACTTGTCAAAT
* * **
63544 TTATTTATGTGAGAATTGTTTCTCTATTGGTTCTTTGACAAACTTCTGAACTTGTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTCTACTGGTTCTTGGACAAACTTCCAAACTTGTCAAAC-TTTT
* ** * * *
63609 CAAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTCAGGAGGATCGATTCCTTCGTGCAATTTTT
65 CAAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTCAAGACAATCAATTCCTTCGAGCAATTTTC
* * * *
63674 TGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATGGTTTATCCTTTTGTAAAAAAC-
130 AGAACATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAGTTTATCC-TTTGTAAAAAACA
** * * * * * *
63738 TTCCGATCTTTGAATTAAAAACTTATTTACGTGAGAATGGTTTCTCTTTTGGTTCTTGG-TCGAA
194 TT-CGATCTAGGAATTAAAAACTAATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCT-GAA
* * * * * *
63802 CTTTCGAGCTTTTCAAACTTTTTCAAGTT-TTTTATAACTTCAATTCCTTAAAGTATTCAAGGCG
257 CTTCCAAACATTTCAAACTTTTTCAACTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACG
* * * *
63866 ATCCATTCCTTAGAAAAATTTTTTGAACATTTCATTCTCAGGAAATAACATCTTTTGGTCCAAAT
322 ATCCATTCCTTAGAAAAATTTTTAGAACAGTCCATTCTCAGGAAATAACATCATTTGGTCCAAAT
* * *
63931 AATCTATCA-TTTTGTAAAGAACTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTGTT
387 AATCTATCAGTTTT-TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTAATGTGAGAATTGTT
63995 TCTCT
451 TCTCT
64000 TGGTTCTTGA
Statistics
Matches: 386, Mismatches: 65, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
490 58 0.15
491 246 0.64
492 82 0.21
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (490 bp):
TTATTTATGTGAGAATTGTTTCTCTACTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTC
AAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTCAAGACAATCAATTCCTTCGAGCAATTTTCA
GAACATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAGTTTATCCTTTGTAAAAAACATT
CGATCTAGGAATTAAAAACTAATCTACATGAGAATGATTTCTCTCTTGGTTCATGGCTGAACTTC
CAAACATTTCAAACTTTTTCAACTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACGATCC
ATTCCTTAGAAAAATTTTTAGAACAGTCCATTCTCAGGAAATAACATCATTTGGTCCAAATAATC
TATCAGTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTAATGTGAGAATTGTTTCTCT
CGTAGTTCTTGGCTGAAGTTCCGAACTTGTCAAAT
Found at i:64160 original size:214 final size:214
Alignment explanation
Indices: 63544--64223 Score: 835
Period size: 215 Copynumber: 3.2 Consensus size: 214
63534 CTTGTCAAAT
* *
63544 TTATTTATGTGAGAATTGTTTCTCTATTGGTTCTTTGA-CAAACTTCTGAACTTGTCAAACTTTT
1 TTATTTATGTGAGAATTGTTTCTCT-TTGGTTC-TTGATCGAACTTTTGAACTTGTCAAACTTTT
* * * * *
63608 TCAAGTTCTTTTACAACTTCAGTTCCTTAAAGTATTCAGGAGGATCGATTCCTTCGTGCAATTTT
64 TCAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGAAATTTT
* * * *
63673 TTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATGGTTTATCCTTTTGTAAAAAAC
129 TTGAACATTCCATCCTCGGGAAATCACATCATTTGGTC-AAATAGTTTATCCTTTTGTAAAAAAC
** *
63738 TTCCGATCTTTGAATTAAAAAC
193 TTTTGGTCTTTGAATTAAAAAC
* * * * * *
63760 TTATTTACGTGAGAATGGTTTCTCTTTTGGTTCTTGGTCGAACTTTCGAGCTTTTCAAACTTTTT
1 TTATTTATGTGAGAATTGTTTCTC-TTTGGTTCTTGATCGAACTTTTGAACTTGTCAAACTTTTT
* * * * *
63825 CAAGTT-TTTTATAACTTCAATTCCTTAAAGTATTCAAGGCGATCCATTCCTTAGAAAAATTTTT
65 CAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGAAATTTTT
* * * * * * * * *
63889 TGAACATTTCATTCTCAGGAAATAACATCTTTTGGTCCAAATAATCTATCATTTTGTAAAGAACT
130 TGAACATTCCATCCTCGGGAAATCACATCATTTGGT-CAAATAGTTTATCCTTTTGTAAAAAACT
*
63954 TTTGGTCTTTGGATTAAAAAC
194 TTTGGTCTTTGAATTAAAAAC
63975 TTATTTATGTGAGAATTGTTTCTC-TTGGTTCTTGATCGAACTTTTGAACTTGTCAAACTTTTTC
1 TTATTTATGTGAGAATTGTTTCTCTTTGGTTCTTGATCGAACTTTTGAACTTGTCAAACTTTTTC
* ** * * **
64039 CAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGTAATTTTCC
66 AAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGAAATTTTTT
* * * * * * *
64104 AAACATTCCAACCTTGGGAAATCACACCATTCGGTGCAAATAGTTTGTCCTTTTGTAAATAACTT
131 GAACATTCCATCCTCGGGAAATCACATCATTTGGT-CAAATAGTTTATCCTTTTGTAAAAAACTT
64169 TTGGTCTTTGAATTAAAAAC
195 TTGGTCTTTGAATTAAAAAC
64189 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT
1 TTATTTATGTGAGAATTGTTTCTCT-TTGGTTCTT
64224 TGCCAAACTT
Statistics
Matches: 389, Mismatches: 69, Indels: 12
0.83 0.15 0.03
Matches are distributed among these distances:
213 40 0.10
214 140 0.36
215 141 0.36
216 67 0.17
217 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (214 bp):
TTATTTATGTGAGAATTGTTTCTCTTTGGTTCTTGATCGAACTTTTGAACTTGTCAAACTTTTTC
AAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGAAATTTTTT
GAACATTCCATCCTCGGGAAATCACATCATTTGGTCAAATAGTTTATCCTTTTGTAAAAAACTTT
TGGTCTTTGAATTAAAAAC
Found at i:67517 original size:26 final size:26
Alignment explanation
Indices: 67475--67526 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
67465 GGATCCTCTT
* *
67475 ATGCAGCGATAACTCTGGACACATTC
1 ATGCAGCGATAACTCTGAACAAATTC
*
67501 ATGCATCGAT-ACTTCTGAACAAATTC
1 ATGCAGCGATAAC-TCTGAACAAATTC
67527 CTACAACGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
ATGCAGCGATAACTCTGAACAAATTC
Found at i:68416 original size:95 final size:95
Alignment explanation
Indices: 68253--68674 Score: 498
Period size: 95 Copynumber: 4.4 Consensus size: 95
68243 GTCTCATTGA
* *
68253 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACGCCAAATCCTATCTTCCTG
1 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCCTG
68318 AAGTTGCAGTGAAGCGAATTAAAGTAGTAG
66 AAGTTGCAGTGAAGCGAATTAAAGTAGTAG
* *
68348 CAAATATTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCCTG
1 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCCTG
68413 AAGTTGCAGTGAAGC-AGATTAAAGTAGTAG
66 AAGTTGCAGTGAAGCGA-ATTAAAGTAGTAG
* * * * *
68443 TAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAG-C-TA-TAAATCCTATA-TCCTT
1 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCC-T
* * * * *
68504 GAAGTTGCAAG-G-ATCGGATTAAAACTAACATTG
65 GAAGTTGC-AGTGAAGCGAATT-AAAGT-A-GTAG
* * * *
68537 ACAGATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCCTATCTTCCT
1 -CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCCT
* * * * *
68602 GAGGTTGCAATGAAACGGATTAAAGCAGTAG
65 GAAGTTGCAGTGAAGCGAATTAAAGTAGTAG
* * *
68633 CGAATCTTTATCTCCTTGAAGTTGTAGTGGAGCAAGATGAAG
1 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAG
68675 TTACAACACC
Statistics
Matches: 277, Mismatches: 36, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
91 8 0.03
92 24 0.09
93 4 0.01
94 4 0.01
95 200 0.72
96 3 0.01
97 3 0.01
98 21 0.08
99 10 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (95 bp):
CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACACCAAATCCTATATTCCTG
AAGTTGCAGTGAAGCGAATTAAAGTAGTAG
Found at i:68587 original size:190 final size:193
Alignment explanation
Indices: 68253--68758 Score: 566
Period size: 190 Copynumber: 2.6 Consensus size: 193
68243 GTCTCATTGA
* * * * *
68253 CAAATCTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACGCCAAATCCTATCTTCC-T
1 CAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCCTAT-ATCCTT
* * * * * * * * *
68317 GAAGTTGC-AGTGAAGCGAATT-AAAGT--AGTAG-CAAATATTTATCTCCCTGAAGTTACAGTG
65 GAACTTGCAAG-G-ATCGGATTAAAACTAAAATTGACAGATCTTTATCTCCCTGAAGTTGCAGTG
* * * *
68377 GAGCAAGATGAAGCCACACCAAATCCTATATTCCTGAAGTTGCAGTGAAGCAGATTAAAGTAGTA
128 GAGCAAGATAAAGCCACACCAAATCCTATATTCCTGAAGTTGCAATGAAACAGATTAAAGCAGTA
68442 G
193 G
* * *
68443 TAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAG-C-TA-TAAATCCTATATCCTTG
1 CAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCCTATATCCTTG
* *
68505 AAGTTGCAAGGATCGGATTAAAACTAACATTGACAGATCTTTATCTCCCTGAAGTTGCAGTGGAG
66 AACTTGCAAGGATCGGATTAAAACTAAAATTGACAGATCTTTATCTCCCTGAAGTTGCAGTGGAG
* * * *
68570 CAAGATAAAGTCACACCAAATCCTATCTTCCTGAGGTTGCAATGAAACGGATTAAAGCAGTAG
131 CAAGATAAAGCCACACCAAATCCTATATTCCTGAAGTTGCAATGAAACAGATTAAAGCAGTAG
* * * *
68633 CGAATCTTTATCTCCTTGAAGTTGTAGTGGAGCAAGATGAAGTTACAACACCAAATCTTATATCC
1 CAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAG-T-C-ACACCAAATCCTATATCC
* * *
68698 TTGAACTTGCAAGGATTGGATTAAAACTAAAATTGACATATCTTATAT-T-CTTGAAGTTGCA
63 TTGAACTTGCAAGGATCGGATTAAAACTAAAATTGACAGATCTT-TATCTCCCTGAAGTTGCA
68759 AGGATCGGAT
Statistics
Matches: 267, Mismatches: 36, Indels: 21
0.82 0.11 0.06
Matches are distributed among these distances:
186 9 0.03
187 23 0.09
188 2 0.01
189 3 0.01
190 161 0.60
193 1 0.00
195 12 0.04
196 53 0.20
197 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (193 bp):
CAAATCTTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGTCACACCAAATCCTATATCCTTG
AACTTGCAAGGATCGGATTAAAACTAAAATTGACAGATCTTTATCTCCCTGAAGTTGCAGTGGAG
CAAGATAAAGCCACACCAAATCCTATATTCCTGAAGTTGCAATGAAACAGATTAAAGCAGTAG
Found at i:68603 original size:47 final size:47
Alignment explanation
Indices: 68261--68610 Score: 182
Period size: 47 Copynumber: 7.4 Consensus size: 47
68251 GACAAATCTT
* * * *
68261 TATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCCACGCCAAATCC
1 TATCTTCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
* * * * **
68308 TATCTTCCTGAAGTTGCAGTGAAGCGAA-TTAAAGT-AGTAGCAAATATT
1 TATCTTCCTGAAGTTGCAGTGGAGC-AAGATAAAGTCA-CACCAAAT-CC
* * * *
68356 TATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCCACACCAAATCC
1 TATCTTCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
* * * ** *
68403 TATATTCCTGAAGTTGCAGTGAAGC-AGATTAAAGT-AGTAGTAAATCTT
1 TATCTTCCTGAAGTTGCAGTGGAGCAAGA-TAAAGTCA-CACCAAATC-C
* * * *
68451 TATC-TCCTTAAAGTTGCAGTGGAGCAAGATGAAG-C-TA-TAAATCC
1 TATCTTCC-TGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
* * * * * * * * *
68495 TAT-ATCCTTGAAGTTGCA-AGGATC-GGATTAAAACTAACATTGACAGATCTT
1 TATCTTCC-TGAAGTTGCAGTGGAGCAAGA-T-AAAGTCACA---CCAAATC-C
*
68546 TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
1 TATCTTCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
*
68593 TATCTTCCTGAGGTTGCA
1 TATCTTCCTGAAGTTGCA
68611 ATGAAACGGA
Statistics
Matches: 221, Mismatches: 58, Indels: 48
0.68 0.18 0.15
Matches are distributed among these distances:
42 2 0.01
43 5 0.02
44 18 0.08
45 6 0.03
46 8 0.04
47 84 0.38
48 61 0.28
49 4 0.02
50 4 0.02
51 20 0.09
52 7 0.03
53 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (47 bp):
TATCTTCCTGAAGTTGCAGTGGAGCAAGATAAAGTCACACCAAATCC
Found at i:68791 original size:50 final size:50
Alignment explanation
Indices: 68684--68810 Score: 159
Period size: 50 Copynumber: 2.5 Consensus size: 50
68674 GTTACAACAC
* * *
68684 CAAATCTTATATCCTTGAACTTGCAAGGATTGGATTAAAACTAAAATTGA
1 CAAATCTTATATTCTTGAAGTTGCAAGGATCGGATTAAAACTAAAATTGA
* * *
68734 CATATCTTATATTCTTGAAGTTGCAAGGATCGGATTAATACTAACATT-A
1 CAAATCTTATATTCTTGAAGTTGCAAGGATCGGATTAAAACTAAAATTGA
68783 GCAAATCTT-TATCTACTTGAAGTTGCAA
1 -CAAATCTTATAT-T-CTTGAAGTTGCAA
68811 TGGAGCAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
49 4 0.06
50 50 0.75
51 13 0.19
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (50 bp):
CAAATCTTATATTCTTGAAGTTGCAAGGATCGGATTAAAACTAAAATTGA
Done.