genome.fa.s10998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010998.1 Kokia drynarioides strain JFW-HI SEQ_125968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78233

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3029--3217	59	3.2	56	81	10	193	30	3	31	34	1.75
3066--3240	88	2.0	87	90	1	278	31	3	32	32	1.75
3148--3301	59	2.6	60	85	3	213	31	2	30	35	1.71
3016--3306	29	9.8	29	74	15	206	31	3	30	34	1.73
3075--3306	88	2.6	86	83	8	220	31	2	31	34	1.72
4363--4447	12	7.3	12	69	7	59	35	3	8	52	1.48
4381--4420	15	2.7	15	88	0	53	30	5	10	55	1.54
7156--7222	23	3.0	23	80	8	66	55	0	0	44	0.99
15545--16184	248	2.6	246	86	4	897	48	4	6	40	1.50
18373--18427	24	2.3	24	96	0	101	32	12	16	38	1.86
22184--22241	20	2.9	20	81	0	62	29	27	8	34	1.87
25337--25377	20	2.1	19	90	4	64	36	31	2	29	1.71
40922--40992	28	2.5	28	72	19	65	47	22	16	12	1.80
41907--41996	44	2.0	44	100	0	180	28	27	18	24	1.98
49088--49324	123	1.9	122	91	2	386	43	8	9	38	1.69
60302--60540	124	1.9	123	85	9	328	39	9	10	40	1.72
62442--62481	18	2.3	18	95	4	73	35	5	22	37	1.76
62510--62541	16	1.9	17	93	6	57	34	0	6	59	1.23
65343--65802	233	2.0	228	91	3	735	28	15	19	36	1.92
68767--68868	27	3.8	27	93	0	168	30	17	19	32	1.95
68898--68967	27	2.6	27	81	2	97	27	22	22	27	1.99
73541--73566	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73738--73862	61	2.0	61	96	0	232	40	16	9	33	1.80
76326--76601	41	6.8	41	78	4	213	36	21	25	17	1.94
76529--76665	73	1.9	73	82	0	175	33	20	27	18	1.96

Tables:   1

The End!