Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000011.1 Kokia drynarioides strain JFW-HI SEQ_15595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1200
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30


Found at i:1160 original size:24 final size:24

Alignment explanation


    Indices: 1133--1179  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1123 CCCAGGATGG

                                    
       1133 TTAGCTCTTACGAGCCCAAAATGA
          1 TTAGCTCTTACGAGCCCAAAATGA

                        *          
       1157 TTAGCTCTTACGGGCCCAAAATG
          1 TTAGCTCTTACGAGCCCAAAATG

       1180 GTTAACCAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26


Consensus pattern (24 bp):   
TTAGCTCTTACGAGCCCAAAATGA
Done.