Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000110.1 Kokia drynarioides strain JFW-HI SEQ_110747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8114
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33


Found at i:4888 original size:32 final size:33

Alignment explanation


    Indices: 4852--4916  Score: 87
    Period size: 32  Copynumber: 2.0  Consensus size: 33

       4842 TCCAAAGCAT

                 *                 * *       
       4852 TTTTTGTCTCAAAAG-AATTTTGCTTAGCAATA
          1 TTTTTATCTCAAAAGTAATTTTGATAAGCAATA

                            *                
       4884 TTTTTATCTCAAAAGTGATTTTGATAAGCAATA
          1 TTTTTATCTCAAAAGTAATTTTGATAAGCAATA

       4917 CTAAGCAGAC


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  32   14  0.50
  33   14  0.50

ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43


Consensus pattern (33 bp):   
TTTTTATCTCAAAAGTAATTTTGATAAGCAATA
Done.