genome.fa.s11000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011000.1 Kokia drynarioides strain JFW-HI SEQ_125970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169102

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3147--3184	20	2.0	20	89	5	60	44	10	13	31	1.77
13737--13802	22	3.0	22	81	2	69	12	10	40	36	1.77
16271--16312	9	4.7	9	93	0	75	45	19	9	26	1.80
16679--16820	52	2.7	52	80	4	180	34	26	14	24	1.94
18927--18955	15	1.9	15	100	0	58	41	20	0	37	1.53
27842--28083	50	4.8	50	72	3	180	20	24	14	40	1.90
27954--28097	26	5.6	26	70	6	105	19	23	13	43	1.87
39236--39343	36	3.0	35	82	5	126	26	13	21	37	1.91
41054--41095	19	2.2	19	86	0	57	28	23	14	33	1.94
41119--41166	23	2.1	23	100	0	96	31	16	8	43	1.78
54652--54816	36	4.6	36	86	0	204	25	16	23	35	1.95
82064--82516	195	2.3	194	83	7	531	25	26	19	28	1.99
84177--84214	14	2.6	15	79	4	51	50	10	0	39	1.37
86902--87121	109	2.0	110	96	0	406	43	21	10	25	1.83
110203--110323	24	5.0	24	93	0	179	28	22	21	28	1.99
114959--115183	114	2.0	114	92	0	378	24	12	31	31	1.93
116885--116954	32	2.2	31	84	2	86	54	10	7	28	1.60
116939--117042	26	3.9	26	71	18	79	35	8	8	47	1.65
141786--141831	20	2.3	20	85	7	58	17	23	15	43	1.87
142968--143029	21	2.7	23	75	12	74	51	1	1	45	1.20
144635--144758	23	5.4	23	94	0	194	47	9	4	38	1.55
145806--145853	21	2.3	21	96	0	87	41	16	10	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154310--154340	3	10.3	3	92	0	53	32	29	0	38	1.57
154339--154375	3	12.3	3	100	0	74	35	0	0	64	0.94
155125--155166	22	1.9	22	85	0	57	11	38	28	21	1.89
156228--156345	49	2.4	49	85	0	155	22	20	17	38	1.93
159971--160066	9	10.6	9	73	14	81	30	1	3	65	1.15
159970--160003	17	2.0	17	100	0	68	23	0	0	76	0.79
160560--160612	15	3.5	15	74	7	54	35	5	1	56	1.34
160742--160784	18	2.4	18	80	7	52	51	0	4	44	1.22
162583--162617	15	2.4	15	95	4	63	57	5	31	5	1.46
167471--167505	15	2.3	15	90	0	52	31	5	0	62	1.18
167669--167735	31	2.2	31	94	0	116	53	0	8	37	1.32

Tables:   1

The End!