Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011002.1 Kokia drynarioides strain JFW-HI SEQ_125972, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3286
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.39


Found at i:256 original size:17 final size:17

Alignment explanation


    Indices: 234--272  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

        224 CTGACTCCAT

                           *  
        234 TTTTAT-TTTCTAGTTTA
          1 TTTTATATTT-TAGTATA

                             
        251 TTTTATATTTTAGTATA
          1 TTTTATATTTTAGTATA

                 
        268 TTTTA
          1 TTTTA

        273 CATCTAAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  17   17  0.85
  18    3  0.15

ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69


Consensus pattern (17 bp):   
TTTTATATTTTAGTATA

Found at i:1686 original size:18 final size:18

Alignment explanation


    Indices: 1663--1699  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1653 ACAATTCTTA

                              
       1663 TCACTTTCAATTCCAATT
          1 TCACTTTCAATTCCAATT

                     *  *     
       1681 TCACTTTCACTTTCAATT
          1 TCACTTTCAATTCCAATT

             
       1699 T
          1 T

       1700 TGATCACAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49


Consensus pattern (18 bp):   
TCACTTTCAATTCCAATT
Done.