Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011006.1 Kokia drynarioides strain JFW-HI SEQ_125976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 922

Length: 1537
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34


Found at i:666 original size:23 final size:23

Alignment explanation


    Indices: 618--766  Score: 133
    Period size: 23  Copynumber: 6.5  Consensus size: 23

        608 TATACGGAAC

                      *  *      *  
        618 AAACAGAGAGTA-TCAAAGTACT
          1 AAACAGAGAGCACACAAAGTGCT

                            *      
        640 -AACAGAGAGCACACATAGTGCT
          1 AAACAGAGAGCACACAAAGTGCT

                 *    *         *  
        662 AAACAAAGAGTACACAAAGTACT
          1 AAACAGAGAGCACACAAAGTGCT

              *                    
        685 AATCAGAGAGCACACAAAGTGCT
          1 AAACAGAGAGCACACAAAGTGCT

              *    *        *      
        708 AATCAGAAAGCACACACAGTGCT
          1 AAACAGAGAGCACACAAAGTGCT

                              * *     
        731 AATAACAGAGAGCACGA-GACGTGCT
          1 -A-AACAGAGAGCAC-ACAAAGTGCT

                       
        756 AAACAGAGAGC
          1 AAACAGAGAGC

        767 GTGCTAGTGT


Statistics
Matches: 103,  Mismatches: 19, Indels: 9
        0.79            0.15        0.07

Matches are distributed among these distances:
  21   10  0.10
  22    7  0.07
  23   68  0.66
  24    2  0.02
  25   15  0.15
  26    1  0.01

ACGTcount: A:0.46, C:0.20, G:0.21, T:0.13


Consensus pattern (23 bp):   
AAACAGAGAGCACACAAAGTGCT

Done.