genome.fa.s11012.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011012.1 Kokia drynarioides strain JFW-HI SEQ_125982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157991

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995--1027	16	2.1	16	94	0	57	66	0	15	18	1.25
5984--6038	2	27.5	2	88	0	83	49	3	1	45	1.30
6827--7078	30	8.5	28	73	9	153	34	22	3	38	1.73
6827--7080	60	4.2	61	75	7	200	35	22	3	38	1.73
7007--7110	30	3.5	31	78	12	101	42	24	0	32	1.61
11993--12024	16	2.0	16	93	0	55	53	3	18	25	1.59
12479--12790	52	6.0	52	89	0	475	26	14	23	35	1.93
16597--16629	10	3.4	10	95	4	59	36	12	21	30	1.90
17162--17232	29	2.4	29	95	0	124	23	15	35	25	1.94
19639--19686	26	1.9	24	83	8	60	31	2	6	60	1.33
24474--24553	31	2.6	32	80	7	94	26	17	12	43	1.84
24780--24950	63	2.8	61	85	6	231	47	11	17	23	1.80
25419--25457	21	1.9	21	89	5	62	64	0	0	35	0.94
26360--26459	30	3.2	30	70	16	71	67	2	27	4	1.20
26410--26461	6	8.5	6	85	10	61	73	0	25	1	0.94
26410--26461	19	2.8	19	82	11	63	73	0	25	1	0.94
33393--33418	3	8.7	3	100	0	52	30	0	0	69	0.89
39562--39593	16	2.0	16	100	0	64	43	18	6	31	1.75
47988--48042	19	2.9	20	81	10	71	41	0	5	52	1.24
47983--48060	19	4.0	19	81	8	61	43	0	5	51	1.24
52379--52424	2	23.0	2	95	0	83	0	0	47	52	1.00
60533--60588	28	2.0	28	86	13	80	25	3	3	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71407--71487	34	2.4	34	91	0	126	28	13	14	43	1.84
71605--71725	45	2.7	45	80	0	125	28	17	16	37	1.92
74924--75084	82	2.0	82	96	0	295	31	8	15	44	1.75
75314--75485	34	5.1	34	81	4	170	27	12	13	45	1.80
76111--76166	28	2.0	28	82	0	67	39	1	12	46	1.52
83572--83682	4	26.8	4	67	23	52	72	5	2	19	1.17
83615--83680	26	2.5	26	76	13	73	74	4	1	19	1.07
84872--85350	146	3.3	147	83	2	613	20	16	18	44	1.87
84873--85343	195	2.4	195	82	1	577	20	16	18	44	1.86
84872--85347	49	9.8	49	84	0	515	20	16	18	44	1.87
90345--90428	6	13.3	6	82	14	53	27	0	1	71	0.93
90354--90390	4	9.5	4	88	5	58	21	0	2	75	0.92
90386--90428	3	14.3	3	100	0	86	32	0	0	67	0.91
90436--90474	14	2.8	13	82	17	51	41	7	20	30	1.80
93082--93120	16	2.3	18	82	13	55	53	15	5	25	1.62
96687--97010	78	4.1	78	82	5	368	26	16	23	34	1.95
96567--97038	40	11.9	40	73	12	273	26	17	23	32	1.97
97121--97992	99	8.8	99	80	4	769	19	29	14	36	1.92
97138--97907	395	1.9	395	84	2	1019	20	29	14	35	1.92
97234--97992	296	2.6	297	81	4	877	19	30	14	35	1.92
97138--98034	395	2.3	395	81	4	943	19	28	15	36	1.93
104593--104633	16	2.4	16	88	8	55	36	7	9	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105292--105334	22	1.9	23	90	4	70	74	6	0	18	1.04
105268--105331	26	2.4	27	82	15	80	71	6	1	20	1.15
111380--111508	31	4.3	30	70	19	92	43	12	15	28	1.83
111327--111508	88	2.1	87	81	9	208	43	12	15	27	1.83
113070--113108	19	2.1	19	85	9	53	41	2	10	46	1.51
117288--117321	18	1.9	17	94	5	59	52	0	0	47	1.00
118738--118786	23	2.1	23	88	0	71	44	12	6	36	1.67
122373--122416	23	1.9	23	100	0	88	54	9	15	20	1.68
128035--128075	12	3.7	11	81	18	50	73	0	26	0	0.84
128035--128077	20	2.1	21	91	4	70	74	0	25	0	0.82
135311--135375	30	2.2	30	91	0	103	26	3	13	56	1.52
140323--140486	9	17.3	9	65	16	64	31	2	4	61	1.28
140388--140429	21	2.0	21	90	9	68	28	0	4	66	1.12
140801--140838	20	1.9	20	94	0	67	60	2	2	34	1.24
140821--140887	8	8.1	8	70	6	53	61	1	2	34	1.20
141102--141156	22	2.5	22	81	3	65	52	9	1	36	1.44
143889--143934	11	4.1	11	78	15	58	67	0	2	30	1.03

Tables:   1

The End!