genome.fa.s11013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011013.1 Kokia drynarioides strain JFW-HI SEQ_125983, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39094

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198--264	32	2.1	32	91	2	109	34	5	13	46	1.68
2051--2110	31	1.9	31	93	0	102	40	6	8	45	1.61
2184--2223	17	2.4	17	86	0	53	45	2	0	52	1.14
3648--3936	30	9.8	29	79	9	280	34	24	2	38	1.69
3648--3911	59	4.5	59	84	7	288	35	25	1	37	1.67
4837--4950	29	3.9	29	98	0	219	27	14	10	47	1.77
8161--8267	54	2.1	51	89	7	162	56	11	18	14	1.67
10153--10579	49	8.7	49	72	10	300	38	16	26	18	1.92
10153--10576	98	4.3	98	83	3	503	38	16	26	18	1.92
10159--10612	197	2.3	196	84	2	563	37	16	27	19	1.92
10573--10736	49	3.3	49	78	0	175	32	20	27	18	1.96
10817--11024	102	2.0	102	90	0	326	37	14	18	28	1.91
10830--11002	51	3.4	51	66	7	136	35	16	17	29	1.93
10839--11047	102	2.0	102	85	0	283	36	16	19	27	1.93
12728--13055	30	11.0	30	85	5	364	37	23	1	37	1.63
12728--13054	59	5.5	59	84	5	356	37	23	1	37	1.63
12729--13039	89	3.5	88	84	3	374	38	22	0	37	1.61
15261--15307	23	2.0	25	87	8	71	59	8	2	29	1.39
15732--15796	32	2.0	32	88	5	96	36	50	6	6	1.52
20532--20577	19	2.4	19	96	0	83	23	0	6	69	1.11
20507--20568	10	6.1	10	74	10	54	30	3	6	59	1.38
20532--20589	10	6.2	9	76	11	55	24	0	6	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21060--21084	13	1.9	13	100	0	50	44	0	8	48	1.32
21148--21176	10	2.7	11	94	5	51	37	0	10	51	1.36
21159--21228	23	3.1	22	85	6	95	40	2	4	52	1.36
21169--21212	6	7.5	6	85	14	65	43	2	0	54	1.12
23077--23177	30	3.4	30	79	14	120	39	26	0	32	1.63
23085--23421	29	11.6	29	66	18	121	32	24	2	40	1.70
23073--23188	29	4.0	29	78	14	114	36	26	0	36	1.63
23083--23514	58	7.4	59	76	12	365	31	24	3	39	1.73
23107--23509	117	3.4	116	79	8	406	32	23	3	40	1.73
33309--33674	49	7.5	48	72	12	246	38	19	26	15	1.91
33318--33603	146	1.9	148	84	5	384	37	19	27	16	1.92
34249--34286	16	2.4	16	86	0	58	42	0	7	50	1.31
35026--35073	25	1.9	25	95	0	87	62	0	0	37	0.95
36072--36556	29	16.5	28	66	15	162	31	26	3	38	1.74
36070--36556	59	8.3	59	81	7	435	31	26	3	38	1.74
36065--36562	118	4.2	116	81	6	481	31	27	3	37	1.75

Tables:   1

The End!