genome.fa.s11016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011016.1 Kokia drynarioides strain JFW-HI SEQ_125987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82005

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045--10205	78	2.1	79	97	1	306	59	6	3	30	1.39
12393--12698	58	5.3	59	79	11	273	36	4	28	31	1.76
12494--12748	29	8.9	27	71	15	108	37	3	27	32	1.72
12519--12777	114	2.2	114	82	8	310	37	3	25	32	1.74
12680--12756	28	2.7	28	83	2	100	41	0	19	38	1.52
13792--13823	16	1.9	17	93	6	57	40	0	0	59	0.97
13818--13859	21	2.0	21	95	0	75	23	7	9	59	1.53
14637--14708	6	12.7	6	75	8	62	52	2	0	44	1.15
14637--14708	11	6.4	11	71	10	56	52	2	0	44	1.15
14636--14691	29	2.0	29	89	6	89	50	3	0	46	1.19
14637--14737	17	5.8	17	73	8	87	54	3	0	41	1.19
14691--14737	12	3.9	12	75	8	51	59	4	0	36	1.17
15348--15556	108	1.9	108	93	0	355	21	21	19	37	1.94
15135--15770	302	2.1	305	87	4	899	23	22	17	35	1.95
15445--15990	194	2.8	193	86	5	722	22	23	17	36	1.95
16121--16263	39	3.7	39	76	8	148	30	22	24	22	1.99
16027--16271	78	3.2	77	81	8	266	27	20	26	24	1.99
16620--17106	100	4.9	100	73	12	302	16	25	19	38	1.92
16620--17098	50	9.5	51	71	15	261	16	25	19	38	1.92
16631--17115	150	3.2	150	86	1	650	16	25	19	39	1.91
16760--17115	50	7.1	50	73	12	264	15	24	20	39	1.91
23858--24110	29	8.6	30	67	16	111	37	3	26	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23929--24022	30	3.2	28	76	13	91	39	3	24	32	1.71
23798--24188	117	3.3	115	80	9	362	37	3	26	32	1.73
24093--24200	29	3.7	29	75	9	103	39	1	22	36	1.65
23951--24188	29	8.1	31	72	15	132	38	2	26	32	1.71
23798--24188	59	6.7	58	77	10	316	37	3	26	32	1.73
25193--25231	16	2.4	16	86	0	51	41	0	2	56	1.13
25235--25276	21	2.0	21	90	0	66	23	9	9	57	1.60
26062--26153	6	15.8	6	70	10	66	53	3	0	43	1.17
26063--26118	29	1.9	29	85	7	78	51	3	0	44	1.18
26048--26168	17	6.9	17	79	5	116	51	4	0	43	1.26
26062--26168	35	3.1	35	82	4	92	51	4	0	43	1.22
30486--30557	30	2.4	30	84	15	89	62	0	1	36	1.04
30482--30565	10	8.5	10	75	11	75	65	0	1	33	1.00
30481--30532	11	4.8	11	74	11	54	69	0	0	30	0.89
30730--30794	19	3.4	19	75	14	62	27	0	3	69	1.03
30762--30796	9	4.0	9	85	7	54	34	0	0	65	0.93
38678--38723	25	1.9	25	86	8	69	32	4	6	56	1.45
42354--42411	22	2.5	22	81	13	64	24	1	3	70	1.12
42351--42411	5	10.8	5	77	22	59	22	1	3	72	1.09
42380--42412	12	2.9	12	91	8	52	27	0	0	72	0.85
52506--52576	28	2.6	27	75	20	67	36	0	0	63	0.95
55329--55405	27	2.8	27	77	9	84	36	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55653--55695	22	1.9	23	90	4	70	41	0	4	53	1.21
55666--55750	17	5.0	17	80	0	98	38	1	5	54	1.33
56482--56536	3	18.0	3	83	3	65	60	0	3	36	1.15
57696--57826	29	4.4	30	74	10	101	36	23	1	38	1.65
57806--58094	117	2.5	117	89	2	420	33	28	2	35	1.70
57727--58094	59	6.3	57	81	8	370	34	27	2	35	1.69
58134--58195	28	2.2	28	82	2	81	33	24	9	32	1.88
66503--66565	30	2.1	31	81	3	74	49	3	1	46	1.27
73718--73759	14	3.1	14	82	3	59	33	0	16	50	1.46
73712--73748	18	2.1	18	89	0	56	35	2	13	48	1.57

Tables:   1

The End!