Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001102.1 Kokia drynarioides strain JFW-HI SEQ_112375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7277
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:6122 original size:21 final size:21

Alignment explanation


    Indices: 6084--6131  Score: 51
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       6074 TTTATAATTG

                         *        
       6084 TAATAAATATTTACTATTAACA
          1 TAAT-AATATTTAATATTAACA

                   *         **  
       6106 TAATAATGTTTAATATTTTCA
          1 TAATAATATTTAATATTAACA

                 
       6127 TAATA
          1 TAATA

       6132 TGTGAAAAAC


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  21   18  0.82
  22    4  0.18

ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46


Consensus pattern (21 bp):   
TAATAATATTTAATATTAACA
Done.